Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G16934 Trifolium pratense HOM05D001551 ORTHO05D005859 2.2e-116 422.2 193 100.0
Medtr3g098510 Medicago truncatula HOM05D001551 ORTHO05D005859 4.0e-110 401.4 193 92.7
Ca_10874_v3 Cicer arietinum L. HOM05D001551 ORTHO05D005859 4.4e-109 397.9 193 93.3
Phvul.009G160500 Phaseolus vulgaris HOM05D001551 ORTHO05D005859 8.4e-108 393.7 193 91.2
Lj1g0018460 Lotus japonicus HOM05D001551 ORTHO05D005859 1.1e-107 393.3 193 90.7
Glyma.04G202400 Glycine max HOM05D001551 ORTHO05D005859 1.4e-107 392.9 193 91.2
Glyma.06G163100 Glycine max HOM05D001551 ORTHO05D005859 2.7e-106 388.7 192 89.6
Lalb_Chr08g0237601 Lupinus albus HOM05D001551 ORTHO05D005859 9.6e-104 380.2 193 87.0
arahy.Tifrunner.gnm1.ann1.D8JD58 Arachis hypogaea HOM05D001551 ORTHO05D005859 1.6e-103 379.4 192 87.5
arahy.Tifrunner.gnm1.ann1.Q2CTBB Arachis hypogaea HOM05D001551 ORTHO05D005859 1.6e-103 379.4 192 87.5
Psat5g055440 Pisum sativum HOM05D001551 ORTHO05D005859 2.6e-101 372.1 193 86.0
Atru.chr6.1937 Acer truncatum HOM05D001551 ORTHO05D005859 3.8e-100 368.2 193 84.5
Thecc.03G141800 Theobroma cacao HOM05D001551 ORTHO05D005859 1.9e-99 365.9 192 84.9
TAR629G2635 Trochodendron aralioides HOM05D001551 ORTHO05D005859 2.4e-99 365.5 193 83.4
Cfa018920 Carpinus fangiana HOM05D001551 ORTHO05D005859 1.2e-98 363.2 193 81.9
Cfa018698 Carpinus fangiana HOM05D001551 ORTHO05D005859 1.6e-98 362.8 193 82.4
COL.COLO4_37269 Corchorus olitorius HOM05D001551 ORTHO05D005859 1.6e-98 362.8 190 85.3
Manes.14G043800 Manihot esculenta HOM05D001551 ORTHO05D005859 3.9e-97 358.2 193 83.4
Cpa.g.sc2215.3 Carica papaya HOM05D001551 ORTHO05D005859 5.1e-97 357.8 193 82.4
Hma1.2p1_0577F.1_g182180 Hydrangea macrophylla HOM05D001551 ORTHO05D005859 8.7e-97 357.1 192 83.9
Duzib205G1491 Durio zibethinus HOM05D001551 ORTHO05D005859 1.9e-96 355.9 192 82.8
QL10p000300 Quercus lobata HOM05D001551 ORTHO05D005859 1.9e-96 355.9 192 81.2
Gohir.A11G038800 Gossypium hirsutum HOM05D001551 ORTHO05D005859 7.4e-96 354.0 192 81.8
Ciclev10032408m.g Citrus clementina HOM05D001551 ORTHO05D005859 9.6e-96 353.6 194 81.4
Cc04_g05770 Coffea canephora HOM05D001551 ORTHO05D005859 2.8e-95 352.1 192 80.7
Potri.012G109800 Populus trichocarpa HOM05D001551 ORTHO05D005859 2.8e-95 352.1 191 81.7
Sabra12G0080000 Salix brachista HOM05D001551 ORTHO05D005859 3.7e-95 351.7 193 81.3
CSS0002484 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 4.8e-95 351.3 192 82.3
CiPaw.12G000400 Carya illinoinensis HOM05D001551 ORTHO05D005859 4.8e-95 351.3 193 79.3
Dinv13710 Davidia involucrata HOM05D001551 ORTHO05D005859 4.8e-95 351.3 192 81.8
CSS0038575 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 1.8e-94 349.4 192 82.3
Gohir.D11G042000 Gossypium hirsutum HOM05D001551 ORTHO05D005859 1.8e-94 349.4 192 80.2
Actinidia18288 Actinidia chinensis HOM05D001551 ORTHO05D005859 3.1e-94 348.6 192 81.2
MD06G1129000 Malus domestica HOM05D001551 ORTHO05D005859 5.3e-94 347.8 193 81.3
Prupe.5G140300 Prunus persica HOM05D001551 ORTHO05D005859 5.3e-94 347.8 193 81.9
FAN04G0171 Fragaria x ananassa HOM05D001551 ORTHO05D005859 9.0e-94 347.1 193 80.3
RcHm_v2.0_Chr7g0188531 Rosa chinensis HOM05D001551 ORTHO05D005859 9.0e-94 347.1 193 79.8
FAN08G3006 Fragaria x ananassa HOM05D001551 ORTHO05D005859 1.5e-93 346.3 193 79.8
MD14G1145900 Malus domestica HOM05D001551 ORTHO05D005859 1.5e-93 346.3 193 81.3
FvH4_5g09710 Fragaria vesca HOM05D001551 ORTHO05D005859 2.0e-93 345.9 191 80.6
FAN18G2118 Fragaria x ananassa HOM05D001551 ORTHO05D005859 2.0e-93 345.9 191 80.6
PSO478G5149 Papaver somniferum HOM05D001551 ORTHO05D005859 2.0e-93 345.9 193 80.3
GSVIVG01008663001 Vitis vinifera HOM05D001551 ORTHO05D005859 2.0e-93 345.9 193 79.3
Gorai.007G045200 Gossypium raimondii HOM05D001551 ORTHO05D005859 3.4e-93 345.1 193 79.8
TAR371G0091 Trochodendron aralioides HOM05D001551 ORTHO05D005859 3.4e-93 345.1 193 80.8
FAN13G0525 Fragaria x ananassa HOM05D001551 ORTHO05D005859 4.5e-93 344.7 191 80.1
Gohir.A03G055800 Gossypium hirsutum HOM05D001551 ORTHO05D005859 4.5e-93 344.7 193 79.3
Lj9C488G12 Lonicera japonica HOM05D001551 ORTHO05D005859 5.8e-93 344.4 194 79.9
PSO017G1738 Papaver somniferum HOM05D001551 ORTHO05D005859 5.8e-93 344.4 193 79.8
Haze_07303 Corylus avellana HOM05D006543 ORTHO05D008308 1.0e-92 343.6 186 81.7
TWI23G1313 Tripterygium wilfordii HOM05D001551 ORTHO05D005859 1.0e-92 343.6 194 80.4
Solyc06g068760.3 Solanum lycopersicum HOM05D001551 ORTHO05D005859 1.7e-92 342.8 192 80.2
EL10Ac5g11272 Beta vulgaris HOM05D001551 ORTHO05D005859 8.4e-92 340.5 193 78.2
Haze_07088 Corylus avellana HOM05D001551 ORTHO05D005859 1.9e-91 339.3 230 69.1
Lsat_1_v5_gn_5_9381 Lactuca sativa HOM05D001551 ORTHO05D005859 3.2e-91 338.6 200 77.5
Sopen06g026040 Solanum pennellii HOM05D001551 ORTHO05D005859 4.2e-91 338.2 193 79.8
Gorai.003G117100 Gossypium raimondii HOM05D001551 ORTHO05D005859 5.5e-91 337.8 193 78.2
MSTRG.22814 Avicennia marina HOM05D001551 ORTHO05D005859 7.1e-91 337.4 192 78.6
Sc04g0000180 Simmondsia chinensis HOM05D001551 ORTHO05D005859 9.3e-91 337.0 194 78.9
PGSC0003DMG400025575 Solanum tuberosum HOM05D001551 ORTHO05D005859 9.3e-91 337.0 193 79.3
SalBow7G1162 Salvia bowleyana HOM05D001551 ORTHO05D005859 1.2e-90 336.7 192 79.2
PGR044G0460 Punica granatum HOM05D001551 ORTHO05D005859 1.6e-90 336.3 194 77.8
BraA01t01589Z Brassica rapa HOM05D001551 ORTHO05D005859 2.7e-90 335.5 195 76.9
Eucgr.K02189 Eucalyptus grandis HOM05D001551 ORTHO05D005859 2.7e-90 335.5 193 76.2
Rhsim12G0181300 Rhododendron simsii HOM05D001551 ORTHO05D005859 2.7e-90 335.5 193 77.7
CAN.G1089.16 Capsicum annuum HOM05D001551 ORTHO05D005859 3.5e-90 335.1 193 78.8
Aqoxy5G03068 Aquilegia oxysepala HOM05D001551 ORTHO05D005859 4.6e-90 334.7 193 76.2
BcaNung03998 Brassica carinata HOM05D001551 ORTHO05D005859 6.0e-90 334.3 195 76.9
MELO3C002387.2 Cucumis melo HOM05D001551 ORTHO05D005859 6.0e-90 334.3 191 75.4
THA.LOC104808046 Tarenaya hassleriana HOM05D001551 ORTHO05D005859 6.0e-90 334.3 194 77.3
A01p16340 Brassica napus HOM05D001551 ORTHO05D005859 7.9e-90 334.0 195 76.4
Peaxi162Scf00207g00254 Petunia axillaris HOM05D001551 ORTHO05D005859 7.9e-90 334.0 193 78.8
Os11g0524300 Oryza sativa ssp. japonica HOM05D001551 ORTHO05D005859 1.3e-89 333.2 192 75.0
C01p20490 Brassica napus HOM05D001551 ORTHO05D005859 1.8e-89 332.8 195 75.9
BcaC09g50811 Brassica carinata HOM05D001551 ORTHO05D005859 2.3e-89 332.4 194 75.8
CsaV3_1G009930 Cucumis sativus L. HOM05D001551 ORTHO05D005859 2.3e-89 332.4 191 74.9
Actinidia36846 Actinidia chinensis HOM05D001551 ORTHO05D005859 3.9e-89 331.6 192 79.2
Rhsim08G0198700 Rhododendron simsii HOM05D001551 ORTHO05D005859 3.9e-89 331.6 192 78.1
Migut.I00664 Erythranthe guttata HOM05D001551 ORTHO05D005859 6.7e-89 330.9 192 77.6
Nitab4.5_0007345g0100 Nicotiana tabacum HOM05D001551 ORTHO05D005859 8.7e-89 330.5 193 78.2
Nitab4.5_0012775g0030 Nicotiana tabacum HOM05D001551 ORTHO05D005859 1.9e-88 329.3 193 77.7
BolC1t01980H Brassica oleracea HOM05D001551 ORTHO05D005859 3.3e-88 328.6 195 74.9
Sed0027340 Sechium edule HOM05D001551 ORTHO05D005859 4.3e-88 328.2 191 75.4
vmacro16761 Vaccinium macrocarpon HOM05D001551 ORTHO05D005859 4.3e-88 328.2 198 76.8
AUR62032208 Chenopodium quinoa HOM05D001551 ORTHO05D005859 5.7e-88 327.8 211 71.6
Actinidia08913 Actinidia chinensis HOM05D001551 ORTHO05D005859 7.4e-88 327.4 192 77.6
AUR62043378 Chenopodium quinoa HOM05D001551 ORTHO05D005859 7.4e-88 327.4 213 70.4
HanXRQChr05g0155371 Helianthus annuus HOM05D001551 ORTHO05D005859 7.4e-88 327.4 198 75.8
Manes.06G127400 Manihot esculenta HOM05D001551 ORTHO05D005859 1.3e-87 326.6 193 78.2
vmacro19115 Vaccinium macrocarpon HOM05D001551 ORTHO05D005859 2.8e-87 325.5 192 76.6
Zm00001eb170550 Zea mays HOM05D001551 ORTHO05D005859 3.7e-87 325.1 192 72.9
AL8G25230 Arabidopsis lyrata HOM05D001551 ORTHO05D005859 2.4e-86 322.4 193 74.1
AT5G51020 Arabidopsis thaliana HOM05D001551 ORTHO05D005859 2.4e-86 322.4 193 74.1
Hund10026 Selenicereus undatus HOM05D001551 ORTHO05D005859 3.1e-86 322.0 186 76.3
Sp6g13170 Schrenkiella parvula HOM05D001551 ORTHO05D005859 9.0e-86 320.5 193 74.1
Sp7g23070 Schrenkiella parvula HOM05D001551 ORTHO05D005859 1.5e-85 319.7 195 73.8
CARHR257170 Cardamine hirsuta HOM05D001551 ORTHO05D005859 2.0e-85 319.3 193 73.6
Aa31LG3G7480 Aethionema arabicum HOM05D001551 ORTHO05D005859 5.8e-85 317.8 193 73.1
Oeu051186.2 Olea europaea HOM05D001551 ORTHO05D005859 1.0e-84 317.0 171 80.7
unitig_27.g25103 Utricularia gibba HOM05D001551 ORTHO05D005859 1.3e-84 316.6 190 76.3
BraA03t10931Z Brassica rapa HOM05D001551 ORTHO05D005859 2.9e-84 315.5 192 72.4
Carub.0008s1102 Capsella rubella HOM05D001551 ORTHO05D005859 8.4e-84 313.9 193 73.1
CDE02G1325 Ceratophyllum demersum HOM05D001551 ORTHO05D005859 7.1e-83 310.8 192 70.8
Nn3g16260 Nelumbo nucifera HOM05D001551 ORTHO05D005859 2.1e-82 309.3 163 82.2
MBI07_g13940_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 6.1e-82 307.8 212 68.9
Gohir.D03G110700 Gossypium hirsutum HOM05D001551 ORTHO05D005859 1.8e-81 306.2 166 80.7
THA.LOC104811554 Tarenaya hassleriana HOM05D001551 ORTHO05D005859 1.1e-80 303.5 163 80.4
A03p16410 Brassica napus HOM05D001551 ORTHO05D005859 5.7e-80 301.2 217 64.1
Sed0019000 Sechium edule HOM05D001551 ORTHO05D005859 7.4e-80 300.8 191 71.7
SGA_v2.0_scaffold5G02806 Striga asiatica HOM05D001551 ORTHO05D005859 7.4e-80 300.8 196 71.4
DCAR_025640 Daucus carota HOM05D001551 ORTHO05D005859 9.7e-80 300.4 192 72.4
Thhalv10014437m.g Eutrema salsugineum HOM05D001551 ORTHO05D005859 3.1e-78 295.4 163 79.1
Duzib084G0881 Durio zibethinus HOM05D001551 ORTHO05D005859 4.1e-78 295.0 162 80.9
TWI39G0428 Tripterygium wilfordii HOM05D001551 ORTHO05D005859 9.0e-78 293.9 193 72.0
BcaC01g06112 Brassica carinata HOM05D001551 ORTHO05D005859 2.6e-77 292.4 195 69.2
AagrBONN_evm.TU.Sc2ySwM_368.1985 Anthoceros agrestis HOM05D001551 ORTHO05D005859 1.9e-75 286.2 164 70.1
SEGI_34423 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 3.2e-75 285.4 192 62.5
SGA_v2.0_scaffold37G14673 Striga asiatica HOM05D001551 ORTHO05D005859 1.0e-73 280.4 146 82.9
Mapoly0002s0145 Marchantia polymorpha HOM05D001551 ORTHO05D005859 3.9e-73 278.5 163 69.3
Actinidia25511 Actinidia chinensis HOM05D001551 ORTHO05D005859 1.1e-72 276.9 179 72.1
ClCG03G004050 Citrullus lanatus HOM05D001551 ORTHO05D005859 1.5e-72 276.6 146 80.8
SMO118G0459 Selaginella moellendorffii HOM05D001551 ORTHO05D005859 2.0e-72 276.2 159 71.7
Pp3c5_10130 Physcomitrium patens HOM05D001551 ORTHO05D005859 5.3e-70 268.1 162 67.3
Pp3c6_23000 Physcomitrium patens HOM05D001551 ORTHO05D005859 5.3e-70 268.1 160 68.1
AUR62011939 Chenopodium quinoa HOM05D001551 ORTHO05D005859 9.1e-70 267.3 206 62.6
AUR62043863 Chenopodium quinoa HOM05D001551 ORTHO05D005859 2.5e-67 259.2 195 63.1
MBI07_g35983_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 3.2e-67 258.8 163 73.6
Nn4g22121 Nelumbo nucifera HOM05D001551 ORTHO05D005859 1.4e-65 253.4 193 61.1
MBI07_g48061_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 6.3e-63 244.6 138 78.3
Hund02515 Selenicereus undatus HOM05D001551 ORTHO05D005859 5.0e-60 235.0 213 56.8
CBR_g30803 Chara braunii HOM05D001551 ORTHO05D005859 5.5e-59 231.5 159 60.4
Sc04g0000140 Simmondsia chinensis HOM05D001551 ORTHO05D005859 2.1e-50 203.0 126 74.6
HPP92_009738 Vanilla planifolia HOM05D001551 ORTHO05D005859 8.8e-49 197.6 123 70.7
Dinv23235 Davidia involucrata HOM05D001551 ORTHO05D005859 1.8e-46 189.9 103 80.6
Thhalv10025970m.g Eutrema salsugineum HOM05D001551 ORTHO05D005859 3.3e-35 152.5 80 83.8
CSS0038626 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 1.4e-33 147.1 105 68.6
CDE06G0746 Ceratophyllum demersum HOM05D001551 ORTHO05D005859 3.2e-30 136.0 146 48.6
CSS0016811 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 4.3e-27 125.6 79 75.9
SEGI_13041 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 2.6e-24 116.3 68 70.6
FvH4_6g04500 Fragaria vesca HOM05D001551 ORTHO05D005859 1.7e-23 113.6 72 73.6
Pp3c16_270 Physcomitrium patens HOM05D001551 ORTHO05D005859 7.8e-21 104.8 65 64.6
Sc04g0000130 Simmondsia chinensis HOM05D001551 ORTHO05D005859 1.2e-18 97.4 50 82.0
HanXRQChr05g0130591 Helianthus annuus HOM05D001551 ORTHO05D005859 3.1e-17 92.8 51 76.5
Psat5g306440 Pisum sativum HOM05D001551 ORTHO05D006558 4.9e-15 85.5 70 62.9
Sabra15G0128500 Salix brachista HOM05D001551 ORTHO05D003058 2.1e-13 80.1 84 46.4
C03p19300 Brassica napus HOM05D001551 ORTHO05D042173 3.5e-13 79.3 43 69.8
BcaC01g06064 Brassica carinata HOM05D001551 ORTHO05D005859 1.1e-09 67.8 38 81.6
Ah.02g114530 Amaranthus hybridus HOM05D001551 ORTHO05D005859 2.6e-08 63.2 50 60.0
Ah.11g046990 Amaranthus hybridus HOM05D001551 ORTHO05D005859 1.3e-07 60.8 50 54.0


User provided reference genes

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