Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G16932 Trifolium pratense HOM05D001540 ORTHO05D037796 7.3e-189 663.7 324 100.0
TPR.G16922 Trifolium pratense HOM05D001540 ORTHO05D001520 2.5e-112 409.5 357 63.6
Ca_10389_v3 Cicer arietinum L. HOM05D001540 ORTHO05D001520 8.0e-103 377.9 358 58.4
Medtr1g089110 Medicago truncatula HOM05D001540 ORTHO05D001520 4.0e-102 375.6 358 57.3
Psat6g169560 Pisum sativum HOM05D001540 ORTHO05D001520 6.3e-100 368.2 373 56.3
Lalb_Chr06g0163231 Lupinus albus HOM05D001540 ORTHO05D001520 6.0e-66 255.4 359 45.1
Lj1g0020362 Lotus japonicus HOM05D001540 ORTHO05D001520 2.2e-60 236.9 361 42.1
Glyma.19G152000 Glycine max HOM05D001540 ORTHO05D001520 2.4e-59 233.4 366 42.6
Glyma.03G148700 Glycine max HOM05D001540 ORTHO05D001520 1.6e-55 220.7 359 40.4
Phvul.001G146700 Phaseolus vulgaris HOM05D001540 ORTHO05D001520 1.5e-48 197.6 333 40.2
arahy.Tifrunner.gnm1.ann1.FP0QNU Arachis hypogaea HOM05D001540 ORTHO05D001520 3.3e-48 196.4 358 37.2
arahy.Tifrunner.gnm1.ann1.J9BD7G Arachis hypogaea HOM05D001540 ORTHO05D001520 5.3e-46 189.1 364 36.5
VMungo1383G3368 Vigna mungo HOM05D001540 ORTHO05D001520 1.5e-45 187.6 357 38.1
QL12p023119 Quercus lobata HOM05D001540 ORTHO05D001520 2.2e-36 157.1 369 33.1
Haze_04791 Corylus avellana HOM05D001540 ORTHO05D001520 2.1e-34 150.6 369 35.2
CSS0042691 Camellia sinensis var. sinensis HOM05D001540 ORTHO05D001520 1.9e-32 144.1 343 33.8
CiPaw.07G097800 Carya illinoinensis HOM05D001540 ORTHO05D001520 3.7e-31 139.8 370 31.4
Prupe.8G249300 Prunus persica HOM05D001540 ORTHO05D001520 4.1e-30 136.3 373 30.0
MD11G1293800 Malus domestica HOM05D001540 ORTHO05D001520 6.5e-28 129.0 360 28.9
Manes.01G211900 Manihot esculenta HOM05D001540 ORTHO05D001520 8.4e-28 128.6 374 31.0
Dinv32974 Davidia involucrata HOM05D001540 ORTHO05D001520 4.6e-26 122.9 349 30.9
Eucgr.H01605 Eucalyptus grandis HOM05D001540 ORTHO05D001520 6.7e-25 119.0 376 29.3
Ciclev10018690m.g Citrus clementina HOM05D001540 ORTHO05D001520 1.9e-24 117.5 370 30.0
MD03G1272800 Malus domestica HOM05D001540 ORTHO05D001520 1.6e-23 114.4 362 28.7
Dinv11275 Davidia involucrata HOM05D001540 ORTHO05D001520 6.3e-23 112.5 333 31.8
Gohir.A12G007200 Gossypium hirsutum HOM05D001540 ORTHO05D001520 5.3e-22 109.4 382 29.3
Gorai.008G006700 Gossypium raimondii HOM05D001540 ORTHO05D001520 2.0e-21 107.5 404 27.5
Gohir.D12G006600 Gossypium hirsutum HOM05D001540 ORTHO05D001520 1.3e-20 104.8 382 28.0
TAR365G1201 Trochodendron aralioides HOM05D001540 ORTHO05D001520 1.3e-20 104.8 389 29.3
Duzib138G1839 Durio zibethinus HOM05D001540 ORTHO05D001520 1.7e-20 104.4 376 27.9
RcHm_v2.0_Chr6g0292181 Rosa chinensis HOM05D001540 ORTHO05D001520 5.0e-20 102.8 369 29.0
TAR636G1465 Trochodendron aralioides HOM05D001540 ORTHO05D001520 2.5e-19 100.5 329 29.5
Thecc.01G286900 Theobroma cacao HOM05D001540 ORTHO05D001520 5.5e-19 99.4 382 27.5
GSVIVG01011044001 Vitis vinifera HOM05D001540 ORTHO05D001520 1.2e-18 98.2 275 31.3
Duzib211G0097 Durio zibethinus HOM05D001540 ORTHO05D001520 2.1e-18 97.4 365 27.9
Atru.chr5.1315 Acer truncatum HOM05D001540 ORTHO05D001520 3.6e-18 96.7 271 32.8
Nn3g21207 Nelumbo nucifera HOM05D001540 ORTHO05D001520 3.6e-18 96.7 386 25.6
FvH4_2g24310 Fragaria vesca HOM05D001540 ORTHO05D001520 4.6e-18 96.3 364 27.2
PGR119G2390 Punica granatum HOM05D001540 ORTHO05D001520 1.4e-17 94.7 366 27.6
vmacro14950 Vaccinium macrocarpon HOM05D001540 ORTHO05D001520 1.8e-17 94.4 341 28.2
COL.COLO4_09156 Corchorus olitorius HOM05D001540 ORTHO05D001520 1.1e-16 91.7 374 27.8
FAN24G0632 Fragaria x ananassa HOM05D001540 ORTHO05D001520 1.5e-16 91.3 364 27.2
PSO210G2393 Papaver somniferum HOM05D001540 ORTHO05D001520 2.0e-16 90.9 380 25.8
Rhsim01G0278400 Rhododendron simsii HOM05D001540 ORTHO05D001520 2.0e-16 90.9 382 27.2
FAN20G0526 Fragaria x ananassa HOM05D001540 ORTHO05D001520 2.5e-16 90.5 368 27.4
FAN15G0286 Fragaria x ananassa HOM05D001540 ORTHO05D001520 1.7e-15 87.8 368 26.9
Actinidia21084 Actinidia chinensis HOM05D001540 ORTHO05D001520 3.7e-15 86.7 103 44.7
FAN27G1000 Fragaria x ananassa HOM05D001540 ORTHO05D001520 3.7e-15 86.7 368 26.6
TAR362G0210 Trochodendron aralioides HOM05D001540 ORTHO05D001520 1.1e-14 85.1 332 27.4
Cpa.g.sc9.141 Carica papaya HOM05D001540 ORTHO05D001520 1.8e-14 84.3 105 40.0
PSO832G0916 Papaver somniferum HOM05D001540 ORTHO05D001520 2.4e-14 84.0 379 25.6
Actinidia24864 Actinidia chinensis HOM05D001540 ORTHO05D001520 3.1e-14 83.6 298 26.2
Ah.06g190270 Amaranthus hybridus HOM05D001540 ORTHO05D001520 5.3e-14 82.8 279 28.3
Lj1C41T12 Lonicera japonica HOM05D001540 ORTHO05D001520 9.1e-14 82.0 334 27.8
Zm00001eb287690 Zea mays HOM05D001540 ORTHO05D001520 2.6e-13 80.5 368 26.9
Aqoxy2G03172 Aquilegia oxysepala HOM05D001540 ORTHO05D001520 3.4e-13 80.1 387 26.1
AUR62000848 Chenopodium quinoa HOM05D001540 ORTHO05D001520 3.4e-13 80.1 300 26.7
Lsat_1_v5_gn_9_1741 Lactuca sativa HOM05D001540 ORTHO05D001520 4.5e-13 79.7 256 27.3
CDE11G0177 Ceratophyllum demersum HOM05D001540 ORTHO05D001520 7.7e-13 79.0 313 27.5
Hund07027 Selenicereus undatus HOM05D001540 ORTHO05D001520 7.7e-13 79.0 352 27.3
AUR62005127 Chenopodium quinoa HOM05D001540 ORTHO05D001520 1.3e-12 78.2 300 26.7
Zm00001eb349780 Zea mays HOM05D001540 ORTHO05D001520 2.2e-12 77.4 378 25.7
CSS0021708 Camellia sinensis var. sinensis HOM05D001540 ORTHO05D001520 8.5e-12 75.5 97 43.3
Sed0024597 Sechium edule HOM05D001540 ORTHO05D001520 8.5e-12 75.5 110 37.3
Nn4g26109 Nelumbo nucifera HOM05D001540 ORTHO05D001520 1.1e-11 75.1 366 24.9
Gohir.A11G261000 Gossypium hirsutum HOM05D001540 ORTHO05D001520 2.5e-11 73.9 335 26.6
Lj9C678G11 Lonicera japonica HOM05D001540 ORTHO05D001520 2.5e-11 73.9 286 24.8
CDE05G0276 Ceratophyllum demersum HOM05D001540 ORTHO05D001520 3.2e-11 73.6 256 27.3
MELO3C015877.2 Cucumis melo HOM05D001540 ORTHO05D001520 3.2e-11 73.6 108 40.7
Gorai.007G291800 Gossypium raimondii HOM05D001540 ORTHO05D001520 3.2e-11 73.6 329 26.7
Gohir.D11G271300 Gossypium hirsutum HOM05D001540 ORTHO05D001520 4.2e-11 73.2 329 26.7
Sc09g0003620 Simmondsia chinensis HOM05D001540 ORTHO05D001520 7.2e-11 72.4 310 26.5
MBI19_g13520_MAGBIO Magnolia biondii HOM05D001540 ORTHO05D001520 9.4e-11 72.0 110 35.5
CANSAT54G2580 Cannabis sativa HOM05D001540 ORTHO05D001520 2.1e-10 70.9 93 41.9
HanXRQChr10g0283131 Helianthus annuus HOM05D001540 ORTHO05D001520 3.6e-10 70.1 275 25.1
Ah.04g159870 Amaranthus hybridus HOM05D001540 ORTHO05D001520 6.1e-10 69.3 298 28.2
Os05g0405900 Oryza sativa ssp. japonica HOM05D001540 ORTHO05D001520 7.9e-10 68.9 381 24.7
Peaxi162Scf00434g00727 Petunia axillaris HOM05D001540 ORTHO05D001520 1.4e-09 68.2 361 26.6
THA.LOC104801208 Tarenaya hassleriana HOM05D001540 ORTHO05D001520 1.4e-09 68.2 105 37.1
HPP92_011812 Vanilla planifolia HOM05D001540 ORTHO05D001520 1.4e-09 68.2 84 44.0
Cc02_g32430 Coffea canephora HOM05D001540 ORTHO05D001520 1.8e-09 67.8 38 68.4
CsaV3_7G028450 Cucumis sativus L. HOM05D001540 ORTHO05D001520 1.8e-09 67.8 79 44.3
Duzib177G0168 Durio zibethinus HOM05D001540 ORTHO05D001520 1.8e-09 67.8 72 43.1
Rhsim07G0178500 Rhododendron simsii HOM05D001540 ORTHO05D001520 1.8e-09 67.8 61 49.2
Lsat_1_v5_gn_5_39040 Lactuca sativa HOM05D001540 ORTHO05D001520 2.3e-09 67.4 331 24.8
PGR083G0549 Punica granatum HOM05D001540 ORTHO05D001520 2.3e-09 67.4 94 42.6
GSVIVG01022020001 Vitis vinifera HOM05D001540 ORTHO05D001520 2.3e-09 67.4 70 45.7
Actinidia30897 Actinidia chinensis HOM05D001540 ORTHO05D001520 3.0e-09 67.0 314 27.1
THA.LOC104821048 Tarenaya hassleriana HOM05D001540 ORTHO05D001520 3.0e-09 67.0 296 27.0
Dinv22920 Davidia involucrata HOM05D001540 ORTHO05D001520 3.9e-09 66.6 36 72.2
vmacro05043 Vaccinium macrocarpon HOM05D001540 ORTHO05D001520 3.9e-09 66.6 61 49.2
Gohir.D13G178500 Gossypium hirsutum HOM05D001540 ORTHO05D001520 6.7e-09 65.9 72 41.7
Gorai.013G203700 Gossypium raimondii HOM05D001540 ORTHO05D001520 6.7e-09 65.9 72 41.7
HanXRQChr16g0512331 Helianthus annuus HOM05D001540 ORTHO05D001520 2.6e-08 63.9 91 39.6
ClCG09G006690 Citrullus lanatus HOM05D001540 ORTHO05D001520 3.3e-08 63.5 113 39.8
Nitab4.5_0000245g0290 Nicotiana tabacum HOM05D001540 ORTHO05D001520 9.7e-08 62.0 104 39.4
Sabra05G0039300 Salix brachista HOM05D001540 ORTHO05D001520 9.7e-08 62.0 92 37.0
Cfa006525 Carpinus fangiana HOM05D001540 ORTHO05D001520 1.3e-07 61.6 92 35.9
Ciclev10000138m.g Citrus clementina HOM05D001540 ORTHO05D001520 1.3e-07 61.6 121 33.1
ECA247G1588 Erigeron canadensis HOM05D001540 ORTHO05D001520 1.3e-07 61.6 299 25.4
Potri.005G040300 Populus trichocarpa HOM05D001540 ORTHO05D001520 1.3e-07 61.6 92 34.8
COL.COLO4_13556 Corchorus olitorius HOM05D001540 ORTHO05D001520 1.7e-07 61.2 72 40.3
MD12G1226700 Malus domestica HOM05D001540 ORTHO05D001520 1.7e-07 61.2 93 38.7
Atru.chr2.524 Acer truncatum HOM05D001540 ORTHO05D001520 2.2e-07 60.8 40 62.5
Prupe.6G332400 Prunus persica HOM05D001540 ORTHO05D001520 2.2e-07 60.8 36 72.2
Actinidia05734 Actinidia chinensis HOM05D001540 ORTHO05D001520 2.8e-07 60.5 69 40.6
RcHm_v2.0_Chr3g0453491 Rosa chinensis HOM05D001540 ORTHO05D001520 2.8e-07 60.5 93 37.6
Thecc.05G298200 Theobroma cacao HOM05D001540 ORTHO05D001520 2.8e-07 60.5 72 37.5
AT1G03380 Arabidopsis thaliana HOM05D001540 ORTHO05D001520 3.7e-07 60.1 55 47.3
DCAR_001934 Daucus carota HOM05D001540 ORTHO05D001520 3.7e-07 60.1 115 32.2
QL03p003637 Quercus lobata HOM05D001540 ORTHO05D001520 3.7e-07 60.1 36 69.4
Nitab4.5_0001903g0120 Nicotiana tabacum HOM05D001540 ORTHO05D001520 4.8e-07 59.7 92 39.1
FAN05G2935 Fragaria x ananassa HOM05D001540 ORTHO05D001520 6.3e-07 59.3 45 55.6
Sed0017837 Sechium edule HOM05D001540 ORTHO05D001520 6.3e-07 59.3 93 35.5
PGSC0003DMG400028594 Solanum tuberosum HOM05D001540 ORTHO05D001520 6.3e-07 59.3 105 39.0
CiPaw.08G167900 Carya illinoinensis HOM05D001540 ORTHO05D001520 1.1e-06 58.5 38 68.4
Haze_04260 Corylus avellana HOM05D001540 ORTHO05D001520 1.1e-06 58.5 92 34.8
MD04G1212000 Malus domestica HOM05D001540 ORTHO05D001520 1.1e-06 58.5 36 69.4
Lsat_1_v5_gn_5_37921 Lactuca sativa HOM05D001540 ORTHO05D001520 1.4e-06 58.2 92 35.9
Gohir.A13G172700 Gossypium hirsutum HOM05D001540 ORTHO05D001520 1.8e-06 57.8 36 61.1
Solyc01g098430.3 Solanum lycopersicum HOM05D001540 ORTHO05D001520 1.8e-06 57.8 46 60.9
Sopen01g041990 Solanum pennellii HOM05D001540 ORTHO05D001520 1.8e-06 57.8 46 60.9
AL1G12910 Arabidopsis lyrata HOM05D001540 ORTHO05D001520 2.4e-06 57.4 46 54.3
CAN.G134.233 Capsicum annuum HOM05D001540 ORTHO05D001520 2.4e-06 57.4 92 39.1
CiPaw.07G012900 Carya illinoinensis HOM05D001540 ORTHO05D001520 2.4e-06 57.4 36 66.7
FAN02G2273 Fragaria x ananassa HOM05D001540 ORTHO05D001520 2.4e-06 57.4 45 53.3
Potri.013G028200 Populus trichocarpa HOM05D001540 ORTHO05D001520 2.4e-06 57.4 92 35.9
MD01G1018400 Malus domestica HOM05D001540 ORTHO05D001520 3.1e-06 57.0 36 66.7
Sp1g02380 Schrenkiella parvula HOM05D001540 ORTHO05D001520 3.1e-06 57.0 84 35.7
Carub.0001s0251 Capsella rubella HOM05D001540 ORTHO05D001520 4.1e-06 56.6 64 42.2
TPR.G16953 Trifolium pratense HOM05D001540 ORTHO05D037796 4.1e-06 56.6 32 96.9
EL10Ac4g09289 Beta vulgaris HOM05D001540 ORTHO05D001520 5.3e-06 56.2 95 36.8
Cpa.g.sc84.121 Carica papaya HOM05D001540 ORTHO05D001520 5.3e-06 56.2 37 64.9
FvH4_6g04980 Fragaria vesca HOM05D001540 ORTHO05D001520 5.3e-06 56.2 45 53.3
FAN09G1386 Fragaria x ananassa HOM05D001540 ORTHO05D001520 5.3e-06 56.2 45 53.3
FAN14G0612 Fragaria x ananassa HOM05D001540 ORTHO05D001520 5.3e-06 56.2 45 53.3
ClCG03G016690 Citrullus lanatus HOM05D001540 ORTHO05D001520 7.0e-06 55.8 36 61.1
FAN05G1651 Fragaria x ananassa HOM05D001540 ORTHO05D001520 7.0e-06 55.8 45 53.3
THA.LOC104805847 Tarenaya hassleriana HOM05D001540 ORTHO05D001520 7.0e-06 55.8 35 65.7
GSVIVG01001549001 Vitis vinifera HOM05D001540 ORTHO05D037796 7.0e-06 55.8 157 31.8
Eucgr.B02027 Eucalyptus grandis HOM05D001540 ORTHO05D001520 9.1e-06 55.5 52 46.2


User provided reference genes

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