Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G1685 Trifolium pratense HOM05D005785 ORTHO05D007962 1.9e-49 198.7 93 100.0
Medtr4g068970 Medicago truncatula HOM05D005785 ORTHO05D007962 3.4e-38 161.4 86 88.4
TPR.G28051 Trifolium pratense HOM05D005785 ORTHO05D007962 3.4e-38 161.4 86 87.2
Ca_20841_v3 Cicer arietinum L. HOM05D005785 ORTHO05D007962 5.8e-38 160.6 86 87.2
Lalb_Chr03g0025851 Lupinus albus HOM05D005785 ORTHO05D007962 1.9e-36 155.6 86 86.0
Peaxi162Scf00003g01433 Petunia axillaris HOM05D005785 ORTHO05D007962 1.9e-36 155.6 86 83.7
DCAR_022090 Daucus carota HOM05D005785 ORTHO05D009166 2.4e-36 155.2 86 82.6
THA.LOC104800353 Tarenaya hassleriana HOM05D005785 ORTHO05D007962 4.1e-36 154.5 86 81.4
Ciclev10028081m.g Citrus clementina HOM05D005785 ORTHO05D007962 5.4e-36 154.1 83 86.7
RcHm_v2.0_Chr6g0262291 Rosa chinensis HOM05D005785 ORTHO05D007962 7.0e-36 153.7 83 86.7
FvH4_2g07870 Fragaria vesca HOM05D005785 ORTHO05D007962 9.2e-36 153.3 83 86.7
Hma1.2p1_1353F.1_g277650 Hydrangea macrophylla HOM05D005785 ORTHO05D007962 1.2e-35 152.9 86 83.7
Hma1.2p1_2724F.1_g327500 Hydrangea macrophylla HOM05D005785 ORTHO05D007962 1.2e-35 152.9 86 83.7
Hma1.2p1_2724F.1_g327510 Hydrangea macrophylla HOM05D005785 ORTHO05D007962 1.2e-35 152.9 86 83.7
QL11p040109 Quercus lobata HOM05D005785 ORTHO05D007962 1.2e-35 152.9 86 83.7
Lj3g0001588 Lotus japonicus HOM05D005785 ORTHO05D007962 1.6e-35 152.5 86 83.7
Rhsim11G0172800 Rhododendron simsii HOM05D005785 ORTHO05D007962 1.6e-35 152.5 86 82.6
Eucgr.G00478 Eucalyptus grandis HOM05D005785 ORTHO05D007962 2.0e-35 152.1 86 82.6
CSS0035207 Camellia sinensis var. sinensis HOM05D005785 ORTHO05D007962 2.7e-35 151.8 86 83.7
Migut.B00273 Erythranthe guttata HOM05D005785 ORTHO05D007962 2.7e-35 151.8 86 82.6
Lsat_1_v5_gn_7_89860 Lactuca sativa HOM05D005785 ORTHO05D007962 2.7e-35 151.8 86 81.4
MD10G1083200 Malus domestica HOM05D005785 ORTHO05D007962 2.7e-35 151.8 75 93.3
Aa31LG8G5730 Aethionema arabicum HOM05D005785 ORTHO05D007962 3.5e-35 151.4 83 84.3
AUR62011364 Chenopodium quinoa HOM05D005785 ORTHO05D007962 3.5e-35 151.4 86 79.1
Nitab4.5_0012694g0010 Nicotiana tabacum HOM05D005785 ORTHO05D007962 3.5e-35 151.4 86 82.6
Haze_02424 Corylus avellana HOM05D005785 ORTHO05D007962 4.6e-35 151.0 86 82.6
PGR042G3650 Punica granatum HOM05D005785 ORTHO05D007962 4.6e-35 151.0 86 81.4
Carub.0003s1872 Capsella rubella HOM05D005785 ORTHO05D007962 6.0e-35 150.6 83 84.3
CARHR094330 Cardamine hirsuta HOM05D005785 ORTHO05D007962 6.0e-35 150.6 83 84.3
Glyma.11G121100 Glycine max HOM05D005785 ORTHO05D007962 6.0e-35 150.6 86 82.6
Glyma.12G046200 Glycine max HOM05D005785 ORTHO05D007962 6.0e-35 150.6 86 82.6
SalBow6G0785 Salvia bowleyana HOM05D005785 ORTHO05D007962 6.0e-35 150.6 86 82.6
Sp3g16990 Schrenkiella parvula HOM05D005785 ORTHO05D007962 6.0e-35 150.6 83 84.3
GSVIVG01031907001 Vitis vinifera HOM05D005785 ORTHO05D007962 6.0e-35 150.6 86 82.6
CSS0030803 Camellia sinensis var. sinensis HOM05D005785 ORTHO05D007962 7.8e-35 150.2 75 93.3
vmacro02148 Vaccinium macrocarpon HOM05D005785 ORTHO05D007962 7.8e-35 150.2 86 81.4
Actinidia00495 Actinidia chinensis HOM05D005785 ORTHO05D007962 1.0e-34 149.8 75 92.0
CiPaw.06G138100 Carya illinoinensis HOM05D005785 ORTHO05D007962 1.0e-34 149.8 75 93.3
ECA236G5032 Erigeron canadensis HOM05D005785 ORTHO05D007962 1.0e-34 149.8 86 79.1
Phvul.011G048000 Phaseolus vulgaris HOM05D005785 ORTHO05D007962 1.0e-34 149.8 86 81.4
Potri.009G111323 Populus trichocarpa HOM05D005785 ORTHO05D007962 1.0e-34 149.8 75 90.7
Potri.T124404 Populus trichocarpa HOM05D005785 ORTHO05D007962 1.0e-34 149.8 75 90.7
A05p30660 Brassica napus HOM05D005785 ORTHO05D007962 1.3e-34 149.4 83 83.1
C05p46540 Brassica napus HOM05D005785 ORTHO05D007962 1.3e-34 149.4 83 83.1
BolC5t33383H Brassica oleracea HOM05D005785 ORTHO05D007962 1.3e-34 149.4 83 83.1
BraA05t21908Z Brassica rapa HOM05D005785 ORTHO05D007962 1.3e-34 149.4 83 83.1
Thhalv10020309m.g Eutrema salsugineum HOM05D005785 ORTHO05D007962 1.3e-34 149.4 83 83.1
Nitab4.5_0001361g0190 Nicotiana tabacum HOM05D005785 ORTHO05D007962 1.3e-34 149.4 86 81.4
Prupe.8G106300 Prunus persica HOM05D005785 ORTHO05D007962 1.3e-34 149.4 75 92.0
Manes.15G147600 Manihot esculenta HOM05D005785 ORTHO05D007962 1.7e-34 149.1 86 80.2
Thecc.02G121200 Theobroma cacao HOM05D005785 ORTHO05D007962 1.7e-34 149.1 83 84.3
HanXRQChr16g0505051 Helianthus annuus HOM05D005785 ORTHO05D007962 2.3e-34 148.7 86 79.1
AL3G32280 Arabidopsis lyrata HOM05D005785 ORTHO05D007962 3.0e-34 148.3 83 83.1
COL.COLO4_32470 Corchorus olitorius HOM05D005785 ORTHO05D007962 3.0e-34 148.3 83 83.1
PSO675G5886 Papaver somniferum HOM05D005785 ORTHO05D007962 3.0e-34 148.3 86 80.2
VMungo1127G1831 Vigna mungo HOM05D005785 ORTHO05D007962 3.0e-34 148.3 75 90.7
Cpa.g.sc62.103 Carica papaya HOM05D005785 ORTHO05D007962 3.9e-34 147.9 83 84.3
Potri.004G150300 Populus trichocarpa HOM05D005785 ORTHO05D007962 3.9e-34 147.9 86 80.2
TWI79G0480 Tripterygium wilfordii HOM05D005785 ORTHO05D007962 3.9e-34 147.9 86 80.2
TAR628G1306 Trochodendron aralioides HOM05D005785 ORTHO05D007962 3.9e-34 147.9 86 79.1
AT3G18890 Arabidopsis thaliana HOM05D005785 ORTHO05D007962 5.0e-34 147.5 83 81.9
Gohir.D02G203047 Gossypium hirsutum HOM05D005785 ORTHO05D007962 5.0e-34 147.5 83 83.1
Gorai.005G229200 Gossypium raimondii HOM05D005785 ORTHO05D007962 5.0e-34 147.5 83 83.1
Sabra09G0085100 Salix brachista HOM05D005785 ORTHO05D007962 5.0e-34 147.5 75 89.3
Solyc10g051110.1 Solanum lycopersicum HOM05D005785 ORTHO05D007962 5.0e-34 147.5 86 80.2
Sopen10g022810 Solanum pennellii HOM05D005785 ORTHO05D007962 5.0e-34 147.5 86 80.2
Cc02_g17970 Coffea canephora HOM05D005785 ORTHO05D007962 6.6e-34 147.1 86 80.2
PSO541G4825 Papaver somniferum HOM05D005785 ORTHO05D007962 8.6e-34 146.7 86 79.1
PGSC0003DMG400008269 Solanum tuberosum HOM05D005785 ORTHO05D007962 8.6e-34 146.7 86 79.1
CsaV3_7G010200 Cucumis sativus L. HOM05D005785 ORTHO05D007962 1.1e-33 146.4 83 83.1
Atru.chr5.2923 Acer truncatum HOM05D005785 ORTHO05D007962 1.5e-33 146.0 83 83.1
Duzib132G1036 Durio zibethinus HOM05D005785 ORTHO05D007962 1.5e-33 146.0 83 83.1
MELO3C018409.2 Cucumis melo HOM05D005785 ORTHO05D007962 1.9e-33 145.6 90 76.7
Aqoxy6G00992 Aquilegia oxysepala HOM05D005785 ORTHO05D007962 2.5e-33 145.2 75 89.3
Nn5g29471 Nelumbo nucifera HOM05D005785 ORTHO05D007962 2.5e-33 145.2 86 76.7
Nn5g31359 Nelumbo nucifera HOM05D005785 ORTHO05D007962 2.5e-33 145.2 86 76.7
CAN.G1.48 Capsicum annuum HOM05D005785 ORTHO05D007962 3.3e-33 144.8 86 79.1
Dinv23561 Davidia involucrata HOM05D005785 ORTHO05D007962 3.3e-33 144.8 86 79.1
Sc14g0001770 Simmondsia chinensis HOM05D005785 ORTHO05D007962 3.3e-33 144.8 86 77.9
Sed0026918 Sechium edule HOM05D005785 ORTHO05D007962 4.3e-33 144.4 83 81.9
unitig_0.g71 Utricularia gibba HOM05D005785 ORTHO05D007962 5.6e-33 144.1 75 86.7
ATR0733G035 Amborella trichopoda HOM05D005785 ORTHO05D007962 7.3e-33 143.7 75 86.7
FAN20G1723 Fragaria x ananassa HOM05D005785 ORTHO05D007962 1.2e-32 142.9 89 79.8
CANSAT80G1909 Cannabis sativa HOM05D005785 ORTHO05D007962 3.6e-32 141.4 75 85.3
SEGI_40956 Sequoiadendron giganteum HOM05D005785 ORTHO05D007962 1.8e-31 139.0 92 69.6
Zm00001eb118450 Zea mays HOM05D005785 ORTHO05D007962 1.8e-31 139.0 83 75.9
Hund06216 Selenicereus undatus HOM05D005785 ORTHO05D007962 6.8e-31 137.1 77 80.5
Eucgr.G01505 Eucalyptus grandis HOM05D005785 ORTHO05D007962 8.9e-31 136.7 88 76.1
Gohir.A03G180301 Gossypium hirsutum HOM05D005785 ORTHO05D007962 8.9e-31 136.7 83 79.5
Os10g0100300 Oryza sativa ssp. japonica HOM05D005785 ORTHO05D007962 1.5e-30 136.0 83 73.5
BcaB06g25943 Brassica carinata HOM05D005785 ORTHO05D007962 1.3e-29 132.9 84 73.8
Actinidia12988 Actinidia chinensis HOM05D005785 ORTHO05D007962 4.9e-29 131.0 77 80.5
arahy.Tifrunner.gnm1.ann1.T05FEK Arachis hypogaea HOM05D005785 ORTHO05D007962 4.9e-29 131.0 86 74.4
FAN15G0249 Fragaria x ananassa HOM05D005785 ORTHO05D007962 3.2e-28 128.3 70 85.7
Mapoly0002s0130 Marchantia polymorpha HOM05D005785 ORTHO05D007962 5.4e-28 127.5 75 73.3
AUR62016697 Chenopodium quinoa HOM05D005785 ORTHO05D007962 3.5e-27 124.8 73 78.1
SMO146G0207 Selaginella moellendorffii HOM05D005785 ORTHO05D007962 4.6e-27 124.4 83 68.7
Pp3c10_3330 Physcomitrium patens HOM05D005785 ORTHO05D000513 6.0e-27 124.0 75 76.0
Cre06.g269050 Chlamydomonas reinhardtii HOM05D005785 ORTHO05D007962 7.3e-25 117.1 75 70.7
Ah.01g006150 Amaranthus hybridus HOM05D005785 ORTHO05D007962 2.0e-22 109.0 86 62.8
EL10Ac9g21765 Beta vulgaris HOM05D005785 ORTHO05D007962 2.8e-16 88.6 97 52.6
Psat7g185400 Pisum sativum HOM05D005785 ORTHO05D007962 2.8e-16 88.6 62 69.4
FAN27G0274 Fragaria x ananassa HOM05D005785 ORTHO05D007962 2.9e-13 78.6 45 82.2
FAN24G2550 Fragaria x ananassa HOM05D005785 ORTHO05D007962 4.9e-13 77.8 45 82.2
arahy.Tifrunner.gnm1.ann1.FX1CEN Arachis hypogaea HOM05D005785 ORTHO05D007962 6.4e-13 77.4 48 75.0
arahy.Tifrunner.gnm1.ann1.V0VBM3 Arachis hypogaea HOM05D005785 ORTHO05D007962 6.4e-13 77.4 62 59.7
AUR62011362 Chenopodium quinoa HOM05D000048 ORTHO05D000445 7.1e-12 73.9 49 69.4
MBI16_g10972_MAGBIO Magnolia biondii HOM05D005785 ORTHO05D007962 1.6e-11 72.8 49 69.4
Cre07.g349700 Chlamydomonas reinhardtii HOM05D005785 ORTHO05D007017 6.2e-08 60.8 53 52.8
MSTRG.5387 Avicennia marina HOM05D005785 ORTHO05D007962 1.1e-07 60.1 42 66.7
Glyma.12G046132 Glycine max HOM05D005785 ORTHO05D007962 1.1e-07 60.1 42 66.7
PRCOL_00003783 Prasinoderma coloniale HOM05D005455 ORTHO05D007017 5.3e-07 57.8 80 43.8
Cre11.g467755 Chlamydomonas reinhardtii HOM05D005455 ORTHO05D007017 3.4e-06 55.1 56 51.8
PRCOL_00006217 Prasinoderma coloniale HOM05D005785 ORTHO05D007017 7.6e-06 53.9 33 69.7
Os06g0360300 Oryza sativa ssp. japonica HOM05D005455 ORTHO05D007017 9.9e-06 53.5 65 44.6
Pp3c6_24470 Physcomitrium patens HOM05D005455 ORTHO05D007017 9.9e-06 53.5 61 44.3


User provided reference genes

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