Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G16813 Trifolium pratense HOM05D007551 ORTHO05D009424 4.7e-127 459.5 736 100.0
Psat4g109680 Pisum sativum HOM05D007551 ORTHO05D009424 8.5e-84 315.8 180 88.9
Medtr8g071970 Medicago truncatula HOM05D007551 ORTHO05D009424 3.0e-81 307.4 195 77.9
Lj4g0019089 Lotus japonicus HOM05D007551 ORTHO05D009424 5.2e-73 280.0 232 64.7
VMungo0251G2062 Vigna mungo HOM05D007551 ORTHO05D009424 5.2e-65 253.4 221 61.1
Lalb_Chr09g0334421 Lupinus albus HOM05D007551 ORTHO05D009424 3.8e-60 237.3 200 60.0
Phvul.003G277400 Phaseolus vulgaris HOM05D007551 ORTHO05D009424 9.4e-59 232.6 194 62.9
Glyma.16G058700 Glycine max HOM05D007551 ORTHO05D009424 4.0e-57 227.3 239 55.2
Prupe.3G018200 Prunus persica HOM05D007551 ORTHO05D009424 4.4e-48 197.2 225 50.2
FvH4_5g24430 Fragaria vesca HOM05D007551 ORTHO05D009424 4.1e-46 190.7 218 50.0
Cfa012637 Carpinus fangiana HOM05D007551 ORTHO05D009424 5.9e-45 186.8 198 53.0
RcHm_v2.0_Chr7g0214821 Rosa chinensis HOM05D007551 ORTHO05D009424 2.3e-44 184.9 215 50.2
FAN13G0867 Fragaria x ananassa HOM05D007551 ORTHO05D009424 3.8e-44 184.1 214 50.5
Ciclev10000274m.g Citrus clementina HOM05D007551 ORTHO05D009424 2.1e-42 178.3 203 50.7
CiPaw.12G053700 Carya illinoinensis HOM05D007551 ORTHO05D009424 8.9e-41 172.9 193 48.7
Dinv37453 Davidia involucrata HOM05D007551 ORTHO05D009424 1.2e-40 172.6 198 49.5
Nn6g33703 Nelumbo nucifera HOM05D007551 ORTHO05D009424 1.2e-40 172.6 196 51.0
TAR362G0203 Trochodendron aralioides HOM05D007551 ORTHO05D009424 1.5e-40 172.2 221 46.2
MD06G1022200 Malus domestica HOM05D007551 ORTHO05D009424 4.4e-40 170.6 221 48.4
TAR633G1897 Trochodendron aralioides HOM05D007551 ORTHO05D009424 5.7e-40 170.2 218 45.4
Potri.003G105700 Populus trichocarpa HOM05D007551 ORTHO05D009424 6.4e-39 166.8 215 45.1
RcHm_v2.0_Chr7g0219861 Rosa chinensis HOM05D007551 ORTHO05D009424 1.1e-38 166.0 194 48.5
Haze_08024 Corylus avellana HOM05D007551 ORTHO05D009424 1.4e-38 165.6 177 52.0
Ca_22472_v3 Cicer arietinum L. HOM05D007551 ORTHO05D009424 1.8e-38 165.2 94 86.2
Nn1g00676 Nelumbo nucifera HOM05D007551 ORTHO05D009424 2.4e-38 164.9 196 48.5
COL.COLO4_16723 Corchorus olitorius HOM05D007551 ORTHO05D009424 4.1e-38 164.1 197 48.7
Manes.17G006200 Manihot esculenta HOM05D007551 ORTHO05D009424 9.2e-38 162.9 207 48.8
Atru.chr6.2125 Acer truncatum HOM05D007551 ORTHO05D009424 2.0e-37 161.8 203 47.3
QL11p054679 Quercus lobata HOM05D007551 ORTHO05D009424 3.5e-37 161.0 208 47.1
Rhsim04G0146500 Rhododendron simsii HOM05D007551 ORTHO05D009424 5.9e-37 160.2 196 45.4
GSVIVG01036918001 Vitis vinifera HOM05D007551 ORTHO05D009424 7.8e-37 159.8 218 42.2
Hma1.2p1_0294F.1_g116420 Hydrangea macrophylla HOM05D007551 ORTHO05D009424 2.3e-36 158.3 216 44.9
ClCG07G011220 Citrullus lanatus HOM05D007551 ORTHO05D009424 8.6e-36 156.4 189 47.6
TWI34G0706 Tripterygium wilfordii HOM05D007551 ORTHO05D009424 8.6e-36 156.4 195 47.7
Sed0007434 Sechium edule HOM05D007551 ORTHO05D009424 1.5e-35 155.6 192 48.4
Sabra03G0072700 Salix brachista HOM05D007551 ORTHO05D009424 3.3e-35 154.5 211 44.5
TWI60G1073 Tripterygium wilfordii HOM05D007551 ORTHO05D009424 3.3e-35 154.5 202 46.0
CsaV3_4G007030 Cucumis sativus L. HOM05D007551 ORTHO05D009424 7.3e-35 153.3 189 46.6
Nitab4.5_0002667g0100 Nicotiana tabacum HOM05D007551 ORTHO05D009424 2.8e-34 151.4 193 45.6
MELO3C016242.2 Cucumis melo HOM05D007551 ORTHO05D009424 6.2e-34 150.2 189 46.6
Nitab4.5_0000856g0020 Nicotiana tabacum HOM05D007551 ORTHO05D009424 6.2e-34 150.2 193 45.6
Thecc.03G322800 Theobroma cacao HOM05D007551 ORTHO05D009424 1.4e-33 149.1 199 45.7
Eucgr.E01036 Eucalyptus grandis HOM05D007551 ORTHO05D009424 2.3e-33 148.3 225 40.0
Peaxi162Scf00619g00022 Petunia axillaris HOM05D007551 ORTHO05D009424 2.3e-33 148.3 204 42.6
Sed0011000 Sechium edule HOM05D007551 ORTHO05D009424 3.1e-33 147.9 194 45.9
Solyc11g005940.3 Solanum lycopersicum HOM05D007551 ORTHO05D009424 1.2e-32 146.0 193 44.6
Aqoxy2G03897 Aquilegia oxysepala HOM05D007551 ORTHO05D009424 4.4e-32 144.1 177 46.3
Thhalv10024401m.g Eutrema salsugineum HOM05D007551 ORTHO05D009424 5.8e-32 143.7 198 46.0
Sopen11g001880 Solanum pennellii HOM05D007551 ORTHO05D009424 5.8e-32 143.7 193 44.0
AT4G19440 Arabidopsis thaliana HOM05D007551 ORTHO05D009424 2.2e-31 141.7 196 44.9
PGSC0003DMG402028683 Solanum tuberosum HOM05D007551 ORTHO05D009424 3.7e-31 141.0 193 44.0
EL10Ac5g11872 Beta vulgaris HOM05D007551 ORTHO05D009424 8.3e-31 139.8 194 43.8
FvH4_4g10440 Fragaria vesca HOM05D007551 ORTHO05D009424 8.3e-31 139.8 229 41.5
PGR042G1889 Punica granatum HOM05D007551 ORTHO05D009424 8.3e-31 139.8 197 40.6
FvH4_4g10410 Fragaria vesca HOM05D007551 ORTHO05D009424 1.1e-30 139.4 229 41.5
PSO210G5788 Papaver somniferum HOM05D007551 ORTHO05D009424 1.1e-30 139.4 198 41.4
CAN.G652.9 Capsicum annuum HOM05D007551 ORTHO05D009424 1.4e-30 139.0 193 43.0
Sp7g18060 Schrenkiella parvula HOM05D007551 ORTHO05D009424 4.1e-30 137.5 198 43.9
Ah.12g056170 Amaranthus hybridus HOM05D000351 ORTHO05D009424 5.4e-30 137.1 219 40.6
Gohir.A12G200366 Gossypium hirsutum HOM05D007551 ORTHO05D009424 1.6e-29 135.6 202 40.6
Sc07g0008330 Simmondsia chinensis HOM05D007551 ORTHO05D009424 1.6e-29 135.6 188 42.0
PSO210G4217 Papaver somniferum HOM05D007551 ORTHO05D009424 2.7e-29 134.8 198 40.4
AL7G34670 Arabidopsis lyrata HOM05D007551 ORTHO05D009424 4.6e-29 134.0 199 43.2
Gorai.N026600 Gossypium raimondii HOM05D007551 ORTHO05D009424 7.8e-29 133.3 227 37.9
Aa31LG6G2050 Aethionema arabicum HOM05D007551 ORTHO05D009424 1.0e-28 132.9 198 42.9
RcHm_v2.0_Chr4g0405931 Rosa chinensis HOM05D007551 ORTHO05D009424 1.0e-28 132.9 211 40.3
Carub.0007s2177 Capsella rubella HOM05D007551 ORTHO05D009424 1.7e-28 132.1 193 43.5
BcaB03g11619 Brassica carinata HOM05D007551 ORTHO05D009424 2.5e-27 128.3 198 42.9
Lsat_1_v5_gn_6_75081 Lactuca sativa HOM05D007551 ORTHO05D009424 1.2e-26 125.9 232 37.1
Gohir.D12G203200 Gossypium hirsutum HOM05D007551 ORTHO05D009424 2.1e-26 125.2 202 38.6
MSTRG.1750 Avicennia marina HOM05D007551 ORTHO05D009424 2.8e-26 124.8 197 40.6
Oeu040609.1 Olea europaea HOM05D007551 ORTHO05D009424 2.8e-26 124.8 214 38.3
Cc00_g20060 Coffea canephora HOM05D007551 ORTHO05D009424 1.1e-25 122.9 195 41.0
SalBow1G3247 Salvia bowleyana HOM05D007551 ORTHO05D009424 4.0e-25 120.9 210 38.6
SalBow8G4006 Salvia bowleyana HOM05D007551 ORTHO05D009424 4.0e-25 120.9 210 38.6
ECA240G1023 Erigeron canadensis HOM05D000046 ORTHO05D000457 8.9e-25 119.8 180 38.9
MBI13_g36729_MAGBIO Magnolia biondii HOM05D007551 ORTHO05D009424 2.0e-24 118.6 190 36.8
Lalb_Chr05g0229381 Lupinus albus HOM05D007551 ORTHO05D009424 4.4e-24 117.5 113 54.0
Oeu029773.2 Olea europaea HOM05D007551 ORTHO05D009424 7.5e-24 116.7 185 42.2
Cpa.g.c44844 Carica papaya HOM05D007551 ORTHO05D009424 7.1e-22 110.2 179 41.9
Migut.E01387 Erythranthe guttata HOM05D007551 ORTHO05D009424 1.6e-21 109.0 212 34.4
AUR62044750 Chenopodium quinoa HOM05D007551 ORTHO05D009424 2.7e-21 108.2 135 43.0
SGA_v2.0_scaffold121G33050 Striga asiatica HOM05D007551 ORTHO05D009424 2.7e-21 108.2 186 36.0
CSS0048505 Camellia sinensis var. sinensis HOM05D007551 ORTHO05D009424 3.3e-19 101.3 93 52.7
CSS0008559 Camellia sinensis var. sinensis HOM05D007551 ORTHO05D009424 7.3e-19 100.1 93 52.7
FAN04G0939 Fragaria x ananassa HOM05D007551 ORTHO05D009424 7.3e-19 100.1 202 33.2
CARHR226230 Cardamine hirsuta HOM05D007551 ORTHO05D009424 1.2e-18 99.4 200 37.5
BolC3t20473H Brassica oleracea HOM05D007551 ORTHO05D009424 4.9e-15 87.4 170 37.6
C03p81990 Brassica napus HOM05D007551 ORTHO05D009424 3.2e-14 84.7 171 36.8
Lj8C372G5 Lonicera japonica HOM05D007551 ORTHO05D009424 3.0e-12 78.2 72 48.6
HPP92_013860 Vanilla planifolia HOM05D007551 ORTHO05D009424 5.1e-12 77.4 192 32.8
Cpa.g.sc3.432 Carica papaya HOM05D007551 ORTHO05D009424 6.6e-12 77.0 64 51.6
ATR0626G221 Amborella trichopoda HOM05D007551 ORTHO05D009424 9.9e-08 63.2 206 33.5
Oeu044967.1 Olea europaea HOM05D007551 ORTHO05D009424 1.3e-07 62.8 93 38.7
MD16G1287400 Malus domestica HOM05D007551 ORTHO05D009424 4.9e-07 60.8 45 64.4


User provided reference genes

Program Settings