Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G16797 Trifolium pratense HOM05D000051 ORTHO05D000015 1.5e-209 732.6 374 100.0
TPR.G16816 Trifolium pratense HOM05D000051 ORTHO05D000015 1.7e-144 516.5 402 73.4
Medtr2g072720 Medicago truncatula HOM05D000051 ORTHO05D000015 4.4e-129 465.3 401 65.8
Medtr2g072730 Medicago truncatula HOM05D000051 ORTHO05D000015 9.5e-124 447.6 396 63.6
Medtr4g032845 Medicago truncatula HOM05D000051 ORTHO05D000015 1.2e-107 394.0 400 57.8
Lj1g0022871 Lotus japonicus HOM05D000051 ORTHO05D000015 5.3e-90 335.5 400 53.8
TPR.G16810 Trifolium pratense HOM05D000051 ORTHO05D000015 1.7e-88 330.5 406 52.7
Glyma.17G194900 Glycine max HOM05D000051 ORTHO05D000015 2.9e-88 329.7 405 53.3
arahy.Tifrunner.gnm1.ann1.AI520R Arachis hypogaea HOM05D000051 ORTHO05D000015 2.1e-83 313.5 405 50.4
TPR.G29389 Trifolium pratense HOM05D000051 ORTHO05D000015 2.6e-81 306.6 380 51.6
VMungo1080G0904 Vigna mungo HOM05D000051 ORTHO05D000015 7.6e-81 305.1 405 47.9
Glyma.13G263100 Glycine max HOM05D000051 ORTHO05D000015 3.5e-78 296.2 384 48.7
arahy.Tifrunner.gnm1.ann1.NSP7CP Arachis hypogaea HOM05D000051 ORTHO05D000015 4.8e-75 285.8 408 43.9
arahy.Tifrunner.gnm1.ann1.L5GG2G Arachis hypogaea HOM05D000051 ORTHO05D000015 1.2e-70 271.2 396 43.9
Medtr1g025870 Medicago truncatula HOM05D000051 ORTHO05D000015 8.4e-64 248.4 394 44.9
arahy.Tifrunner.gnm1.ann1.U4L8N2 Arachis hypogaea HOM05D000051 ORTHO05D000015 1.4e-63 247.7 328 50.3
Medtr2g072710 Medicago truncatula HOM05D000051 ORTHO05D000015 3.7e-59 233.0 177 71.8
Lj3g0011429 Lotus japonicus HOM05D000051 ORTHO05D000015 4.8e-59 232.6 404 42.6
TPR.G26409 Trifolium pratense HOM05D000051 ORTHO05D000015 1.7e-56 224.2 399 43.1
Lj2g0025192 Lotus japonicus HOM05D000051 ORTHO05D000015 4.3e-52 209.5 403 37.7
TPR.G7505 Trifolium pratense HOM05D000051 ORTHO05D000015 1.1e-50 204.9 368 43.2
Lj2g0008890 Lotus japonicus HOM05D000051 ORTHO05D000015 4.5e-49 199.5 403 37.2
Medtr6g022350 Medicago truncatula HOM05D000051 ORTHO05D000015 4.5e-49 199.5 369 41.7
arahy.Tifrunner.gnm1.ann1.HYYB50 Arachis hypogaea HOM05D000051 ORTHO05D000015 7.2e-47 192.2 379 39.6
Glyma.17G193700 Glycine max HOM05D000051 ORTHO05D000015 2.7e-46 190.3 384 38.5
arahy.Tifrunner.gnm1.ann1.FIN1P6 Arachis hypogaea HOM05D000051 ORTHO05D000015 7.9e-46 188.7 348 40.2
Medtr5g005700 Medicago truncatula HOM05D000051 ORTHO05D000015 2.0e-44 184.1 405 38.3
Glyma.13G262900 Glycine max HOM05D000051 ORTHO05D000015 2.6e-44 183.7 398 35.9
Lj2g0017050 Lotus japonicus HOM05D000051 ORTHO05D000015 1.0e-40 171.8 376 37.8
Medtr5g007090 Medicago truncatula HOM05D000051 ORTHO05D000015 1.2e-38 164.9 388 37.6
TPR.G16814 Trifolium pratense HOM05D000051 ORTHO05D000015 3.6e-38 163.3 240 45.0
TPR.G4055 Trifolium pratense HOM05D000051 ORTHO05D000015 2.6e-36 157.1 387 35.1
Medtr8g006910 Medicago truncatula HOM05D000051 ORTHO05D000015 3.3e-36 156.8 337 39.5
TPR.G3816 Trifolium pratense HOM05D000051 ORTHO05D000015 6.3e-35 152.5 120 71.7
arahy.Tifrunner.gnm1.ann1.GLFE0R Arachis hypogaea HOM05D000051 ORTHO05D000015 1.8e-34 151.0 398 32.7
Phvul.005G070500 Phaseolus vulgaris HOM05D000051 ORTHO05D000015 3.1e-34 150.2 395 32.9
Medtr7g094030 Medicago truncatula HOM05D000051 ORTHO05D030175 1.6e-33 147.9 407 32.4
Glyma.13G262800 Glycine max HOM05D000051 ORTHO05D000015 4.5e-33 146.4 411 32.8
Glyma.15G242200 Glycine max HOM05D000051 ORTHO05D000015 5.9e-33 146.0 406 32.3
arahy.Tifrunner.gnm1.ann1.H22LZM Arachis hypogaea HOM05D000051 ORTHO05D000015 1.0e-32 145.2 138 58.7
Phvul.005G065100 Phaseolus vulgaris HOM05D000051 ORTHO05D000015 1.7e-32 144.4 402 32.8
arahy.Tifrunner.gnm1.ann1.45LTGK Arachis hypogaea HOM05D000051 ORTHO05D000015 2.9e-32 143.7 428 32.0
VMungo1080G1404 Vigna mungo HOM05D000051 ORTHO05D000015 2.9e-32 143.7 402 33.1
VMungo1080G0675 Vigna mungo HOM05D000051 ORTHO05D000015 5.0e-32 142.9 400 31.5
TPR.G6877 Trifolium pratense HOM05D000051 ORTHO05D000015 1.1e-31 141.7 409 29.6
Lj3g0010579 Lotus japonicus HOM05D000051 ORTHO05D000015 2.5e-31 140.6 403 30.5
Phvul.005G064900 Phaseolus vulgaris HOM05D000051 ORTHO05D000015 2.5e-31 140.6 409 32.5
Lj3g0005297 Lotus japonicus HOM05D000051 ORTHO05D000015 3.2e-31 140.2 403 30.5
Glyma.15G242400 Glycine max HOM05D000051 ORTHO05D000015 4.2e-31 139.8 411 32.4
TPR.G16802 Trifolium pratense HOM05D000051 ORTHO05D000015 3.6e-30 136.7 406 29.8
TPR.G6826 Trifolium pratense HOM05D000051 ORTHO05D000015 4.7e-30 136.3 408 30.1
Lj3g0017701 Lotus japonicus HOM05D000051 ORTHO05D000015 1.0e-29 135.2 403 30.0
Medtr1g115250 Medicago truncatula HOM05D000051 ORTHO05D000015 3.0e-29 133.7 352 34.9
Lj3g0000880 Lotus japonicus HOM05D000051 ORTHO05D000015 8.8e-29 132.1 409 30.6
Lj3g0017405 Lotus japonicus HOM05D000051 ORTHO05D000015 8.8e-29 132.1 372 28.5
Medtr3g018680 Medicago truncatula HOM05D000051 ORTHO05D000015 8.8e-29 132.1 355 34.4
Medtr2g072530 Medicago truncatula HOM05D000051 ORTHO05D000015 1.5e-28 131.3 405 29.6
TPR.G15633 Trifolium pratense HOM05D000051 ORTHO05D000015 2.0e-28 131.0 395 32.2
Medtr2g072650 Medicago truncatula HOM05D000051 ORTHO05D000015 9.7e-28 128.6 235 39.1
Medtr2g082880 Medicago truncatula HOM05D000051 ORTHO05D000015 2.2e-27 127.5 391 29.7
Medtr5g007110 Medicago truncatula HOM05D000051 ORTHO05D000015 1.8e-26 124.4 123 58.5
arahy.Tifrunner.gnm1.ann1.ELME12 Arachis hypogaea HOM05D002329 ORTHO05D000015 2.0e-25 120.9 137 51.8
Medtr2g067210 Medicago truncatula HOM05D000051 ORTHO05D000015 2.2e-24 117.5 301 37.2
Ca_16248_v3 Cicer arietinum L. HOM05D000051 ORTHO05D000015 2.9e-24 117.1 309 34.3
Medtr5g007130 Medicago truncatula HOM05D000051 ORTHO05D000015 3.8e-24 116.7 366 31.4
arahy.Tifrunner.gnm1.ann1.NZKQ1I Arachis hypogaea HOM05D000051 ORTHO05D000015 1.5e-23 114.8 89 67.4
Lj3g0027587 Lotus japonicus HOM05D000051 ORTHO05D000015 2.7e-22 110.5 414 26.6
TPR.G16809 Trifolium pratense HOM05D000051 ORTHO05D000015 4.0e-21 106.7 392 27.0
Medtr2g082800 Medicago truncatula HOM05D000051 ORTHO05D000015 1.2e-20 105.1 358 31.6
Lj3g0014741 Lotus japonicus HOM05D000051 ORTHO05D000015 1.3e-19 101.7 390 27.9
Medtr2g082850 Medicago truncatula HOM05D000051 ORTHO05D000015 2.3e-16 90.9 329 30.4
Lj2g0018232 Lotus japonicus HOM05D000051 ORTHO05D000015 5.0e-16 89.7 263 33.8
Dinv18383 Davidia involucrata HOM05D000051 ORTHO05D008292 6.6e-16 89.4 373 27.6
Oeu007604.1 Olea europaea HOM05D000051 ORTHO05D000015 8.6e-16 89.0 379 26.1
Dinv40730 Davidia involucrata HOM05D000051 ORTHO05D000015 4.2e-15 86.7 391 26.9
Glyma.13G262700 Glycine max HOM05D000051 ORTHO05D000015 4.2e-15 86.7 154 35.7
Medtr7g094050 Medicago truncatula HOM05D000051 ORTHO05D000015 4.2e-15 86.7 120 43.3
Potri.011G024300 Populus trichocarpa HOM05D000051 ORTHO05D000015 7.2e-15 85.9 400 27.8
Actinidia15955 Actinidia chinensis HOM05D000051 ORTHO05D000015 2.1e-14 84.3 426 26.5
Psat1g008320 Pisum sativum HOM05D000051 ORTHO05D000015 2.1e-14 84.3 203 32.0
Lalb_Chr03g0031411 Lupinus albus HOM05D000051 ORTHO05D000015 1.0e-13 82.0 273 28.6
Medtr1g115245 Medicago truncatula HOM05D000051 ORTHO05D000015 6.8e-13 79.3 156 40.4
Medtr2g082780 Medicago truncatula HOM05D000051 ORTHO05D000015 6.8e-13 79.3 176 34.7
CSS0042330 Camellia sinensis var. sinensis HOM05D000051 ORTHO05D000015 5.7e-12 76.3 375 24.8
Psat5g251720 Pisum sativum HOM05D000051 ORTHO05D000015 5.7e-12 76.3 210 35.2
Dinv17485 Davidia involucrata HOM05D000051 ORTHO05D000015 7.5e-12 75.9 407 25.3
Hma1.2p1_1609F.1_g293440 Hydrangea macrophylla HOM05D000051 ORTHO05D000015 9.8e-12 75.5 377 25.2
Lalb_Chr03g0031401 Lupinus albus HOM05D000051 ORTHO05D000015 9.8e-12 75.5 137 38.0
RcHm_v2.0_Chr5g0069761 Rosa chinensis HOM05D000051 ORTHO05D000015 1.3e-11 75.1 360 27.8
Lj1A869T76 Lonicera japonica HOM05D000051 ORTHO05D000015 2.2e-11 74.3 355 25.9
Cfa000258 Carpinus fangiana HOM05D000051 ORTHO05D000015 3.7e-11 73.6 384 23.7
HanXRQChr13g0407771 Helianthus annuus HOM05D000051 ORTHO05D000015 4.9e-11 73.2 413 24.2
QL05p074545 Quercus lobata HOM05D000051 ORTHO05D000015 6.3e-11 72.8 413 25.4
Medtr5g006480 Medicago truncatula HOM05D000051 ORTHO05D000015 8.3e-11 72.4 79 51.9
Cfa016050 Carpinus fangiana HOM05D000051 ORTHO05D000015 1.1e-10 72.0 302 27.2
QL01p041755 Quercus lobata HOM05D000051 ORTHO05D000015 1.8e-10 71.2 406 27.6
Cfa006563 Carpinus fangiana HOM05D000051 ORTHO05D000015 3.2e-10 70.5 392 27.3
MSTRG.15164 Avicennia marina HOM05D000051 ORTHO05D000015 5.4e-10 69.7 373 24.4
vmacro09739 Vaccinium macrocarpon HOM05D000051 ORTHO05D000015 5.4e-10 69.7 323 23.5
Cfa000226 Carpinus fangiana HOM05D000051 ORTHO05D000015 7.0e-10 69.3 383 24.8
Duzib106G1684 Durio zibethinus HOM05D000051 ORTHO05D000015 9.2e-10 68.9 331 27.8
DCAR_022537 Daucus carota HOM05D000051 ORTHO05D000015 1.6e-09 68.2 299 27.4
Actinidia05113 Actinidia chinensis HOM05D000051 ORTHO05D000015 3.5e-09 67.0 394 22.8
Actinidia06264 Actinidia chinensis HOM05D000051 ORTHO05D000015 7.8e-09 65.9 349 25.8
TPR.G7205 Trifolium pratense HOM05D000051 ORTHO05D000015 7.8e-09 65.9 75 49.3
Dinv17489 Davidia involucrata HOM05D000051 ORTHO05D000015 1.0e-08 65.5 410 24.1
EL10Ac4g07920 Beta vulgaris HOM05D000051 ORTHO05D000015 1.3e-08 65.1 410 24.6
TWI38G2112 Tripterygium wilfordii HOM05D000051 ORTHO05D000015 1.3e-08 65.1 327 28.4
QL01p041884 Quercus lobata HOM05D000051 ORTHO05D000015 2.3e-08 64.3 191 31.9
Rhsim04G0001300 Rhododendron simsii HOM05D000051 ORTHO05D000015 2.3e-08 64.3 265 28.3
Cfa000229 Carpinus fangiana HOM05D000051 ORTHO05D000015 3.9e-08 63.5 251 28.3
Sabra11G0015300 Salix brachista HOM05D007420 ORTHO05D009353 3.9e-08 63.5 342 26.0
Aqoxy4G01151 Aquilegia oxysepala HOM05D000051 ORTHO05D000015 6.6e-08 62.8 385 23.6
Cfa000256 Carpinus fangiana HOM05D000051 ORTHO05D000015 1.5e-07 61.6 268 25.4
PSO339G6140 Papaver somniferum HOM05D000051 ORTHO05D000015 1.5e-07 61.6 240 25.8
Lsat_1_v5_gn_7_109401 Lactuca sativa HOM05D000051 ORTHO05D000015 3.3e-07 60.5 351 24.5
Lj1A868T32 Lonicera japonica HOM05D000051 ORTHO05D000015 3.3e-07 60.5 410 23.2
QL08p012538 Quercus lobata HOM05D000051 ORTHO05D000015 3.3e-07 60.5 390 26.2
CSS0011408 Camellia sinensis var. sinensis HOM05D000051 ORTHO05D000015 5.6e-07 59.7 372 23.4
ECA240G4277 Erigeron canadensis HOM05D000051 ORTHO05D000015 5.6e-07 59.7 303 25.1
QL01p041777 Quercus lobata HOM05D000051 ORTHO05D000015 5.6e-07 59.7 391 25.6
QL05p025638 Quercus lobata HOM05D000051 ORTHO05D000015 5.6e-07 59.7 360 23.9
vmacro11759 Vaccinium macrocarpon HOM05D000051 ORTHO05D000015 5.6e-07 59.7 340 24.4
Migut.M01792 Erythranthe guttata HOM05D000051 ORTHO05D000015 7.3e-07 59.3 404 22.5
Nn3g18638 Nelumbo nucifera HOM05D000051 ORTHO05D000015 7.3e-07 59.3 361 24.7
COL.COLO4_35717 Corchorus olitorius HOM05D000051 ORTHO05D000015 9.5e-07 58.9 310 21.9
RhsimUnG0013200 Rhododendron simsii HOM05D000051 ORTHO05D000015 9.5e-07 58.9 340 23.8
Dinv17490 Davidia involucrata HOM05D000051 ORTHO05D000015 1.2e-06 58.5 404 24.0
Lj1g0025783 Lotus japonicus HOM05D000051 ORTHO05D236571 1.2e-06 58.5 68 52.9
QL05p074499 Quercus lobata HOM05D000051 ORTHO05D000015 1.2e-06 58.5 187 29.4
AL3G27020 Arabidopsis lyrata HOM05D000051 ORTHO05D000015 1.6e-06 58.2 389 20.8
AT5G27750 Arabidopsis thaliana HOM05D000051 ORTHO05D000015 1.6e-06 58.2 195 29.2
Cc01_g01390 Coffea canephora HOM05D000051 ORTHO05D000015 1.6e-06 58.2 236 27.1
Nn3g18635 Nelumbo nucifera HOM05D000051 ORTHO05D000015 1.6e-06 58.2 393 24.4
Psat4g122640 Pisum sativum HOM05D000051 ORTHO05D000015 1.6e-06 58.2 255 27.5
Aa31LG8G1930 Aethionema arabicum HOM05D003241 ORTHO05D000015 2.1e-06 57.8 395 23.3
vmacro11748 Vaccinium macrocarpon HOM05D000051 ORTHO05D017222 2.1e-06 57.8 378 22.8
Actinidia03617 Actinidia chinensis HOM05D000051 ORTHO05D000015 2.8e-06 57.4 195 27.2
PSO675G3143 Papaver somniferum HOM05D000051 ORTHO05D000015 2.8e-06 57.4 390 22.6
arahy.Tifrunner.gnm1.ann1.W5GG00 Arachis hypogaea HOM05D000051 ORTHO05D000015 3.6e-06 57.0 131 35.1
Cc01_g01370 Coffea canephora HOM05D000051 ORTHO05D000015 3.6e-06 57.0 235 27.2
RcHm_v2.0_Chr5g0069831 Rosa chinensis HOM05D000051 ORTHO05D000015 3.6e-06 57.0 172 30.8
Sc13g0005650 Simmondsia chinensis HOM05D000051 ORTHO05D000015 3.6e-06 57.0 136 30.9
Lalb_Chr03g0040371 Lupinus albus HOM05D000576 ORTHO05D000368 8.0e-06 55.8 129 31.0
Sp3g12940 Schrenkiella parvula HOM05D000051 ORTHO05D000015 8.0e-06 55.8 389 21.9
PGSC0003DMG400031165 Solanum tuberosum HOM05D000051 ORTHO05D011342 8.0e-06 55.8 409 24.2


User provided reference genes

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