Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G16745 Trifolium pratense HOM05D005989 ORTHO05D000022 4.6e-67 257.7 124 100.0
TPR.G37438 Trifolium pratense HOM05D005989 ORTHO05D000022 1.4e-63 246.1 124 94.4
TPR.G15449 Trifolium pratense HOM05D005989 ORTHO05D000022 7.9e-35 150.6 119 55.5
TPR.G3914 Trifolium pratense HOM05D005989 ORTHO05D000022 1.2e-27 126.7 90 60.0
TPR.G13740 Trifolium pratense HOM05D005989 ORTHO05D000022 5.3e-23 111.3 119 43.7
RcHm_v2.0_Chr4g0395061 Rosa chinensis HOM05D005989 ORTHO05D000022 6.1e-19 97.8 108 40.7
Atru.chr10.504 Acer truncatum HOM05D000003 ORTHO05D000022 8.0e-19 97.4 121 35.5
Atru.chr1.2142 Acer truncatum HOM05D000003 ORTHO05D000022 1.0e-18 97.1 121 35.5
Atru.chr5.1911 Acer truncatum HOM05D005989 ORTHO05D000022 1.0e-18 97.1 121 35.5
Atru.chr9.192 Acer truncatum HOM05D005989 ORTHO05D000022 1.4e-18 96.7 116 36.2
Atru.chr1.1636 Acer truncatum HOM05D005989 ORTHO05D000022 8.8e-18 94.0 121 36.4
Atru.chr2.1816 Acer truncatum HOM05D000003 ORTHO05D000022 8.8e-18 94.0 121 34.7
RcHm_v2.0_Chr3g0459251 Rosa chinensis HOM05D005989 ORTHO05D000022 8.8e-18 94.0 108 38.9
Psat2g155160 Pisum sativum HOM05D005989 ORTHO05D000022 1.2e-17 93.6 116 37.9
Atru.chr2.2454 Acer truncatum HOM05D005989 ORTHO05D000022 1.5e-17 93.2 121 36.4
RcHm_v2.0_Chr1g0352021 Rosa chinensis HOM05D005989 ORTHO05D000022 2.6e-17 92.4 121 36.4
RcHm_v2.0_Chr6g0264461 Rosa chinensis HOM05D005989 ORTHO05D000022 2.6e-17 92.4 121 36.4
RcHm_v2.0_Chr5g0077831 Rosa chinensis HOM05D005989 ORTHO05D011902 9.8e-17 90.5 113 36.3
TPR.G6692 Trifolium pratense HOM05D005989 ORTHO05D000022 9.8e-17 90.5 117 39.3
Atru.chr2.2552 Acer truncatum HOM05D005989 ORTHO05D000022 1.3e-16 90.1 121 36.4
Prupe.4G283800 Prunus persica HOM05D005989 ORTHO05D000651 2.2e-16 89.4 115 40.0
RcHm_v2.0_Chr7g0184971 Rosa chinensis HOM05D005989 ORTHO05D000022 2.8e-16 89.0 109 39.4
RcHm_v2.0_Chr4g0409421 Rosa chinensis HOM05D005989 ORTHO05D000022 3.7e-16 88.6 119 36.1
TPR.G40388 Trifolium pratense HOM05D005989 ORTHO05D000022 4.8e-16 88.2 99 48.5
MD07G1021300 Malus domestica HOM05D000155 ORTHO05D000022 1.4e-15 86.7 102 40.2
RcHm_v2.0_Chr6g0278601 Rosa chinensis HOM05D000003 ORTHO05D000004 1.4e-15 86.7 113 35.4
Atru.chr3.1839 Acer truncatum HOM05D005989 ORTHO05D000022 1.8e-15 86.3 116 32.8
Psat0s1775g0320 Pisum sativum HOM05D005989 ORTHO05D000022 4.1e-15 85.1 119 37.8
Lalb_Chr18g0052711 Lupinus albus HOM05D005989 ORTHO05D000022 5.4e-15 84.7 113 37.2
RcHm_v2.0_Chr2g0167951 Rosa chinensis HOM05D005989 ORTHO05D000022 1.6e-14 83.2 112 35.7
MD02G1050700 Malus domestica HOM05D000155 ORTHO05D000022 2.0e-14 82.8 102 40.2
Psat4g016640 Pisum sativum HOM05D005989 ORTHO05D000022 2.7e-14 82.4 121 36.4
RcHm_v2.0_Chr2g0160431 Rosa chinensis HOM05D000003 ORTHO05D000004 2.7e-14 82.4 121 35.5
FvH4_6g09211 Fragaria vesca HOM05D000003 ORTHO05D000651 3.5e-14 82.0 122 35.2
MD13G1019000 Malus domestica HOM05D000155 ORTHO05D000022 3.5e-14 82.0 120 35.8
RcHm_v2.0_Chr7g0185631 Rosa chinensis HOM05D000155 ORTHO05D000022 5.9e-14 81.3 121 34.7
Glyma.13G358333 Glycine max HOM05D005989 ORTHO05D000022 7.7e-14 80.9 94 38.3
RcHm_v2.0_Chr2g0129631 Rosa chinensis HOM05D005989 ORTHO05D000651 7.7e-14 80.9 93 41.9
RcHm_v2.0_Chr3g0453641 Rosa chinensis HOM05D000003 ORTHO05D000004 7.7e-14 80.9 121 34.7
Medtr3g052720 Medicago truncatula HOM05D000001 ORTHO05D000003 1.0e-13 80.5 121 35.5
Lalb_Chr21g0306271 Lupinus albus HOM05D005989 ORTHO05D000022 1.3e-13 80.1 120 35.0
RcHm_v2.0_Chr3g0451531 Rosa chinensis HOM05D005989 ORTHO05D000022 2.2e-13 79.3 120 33.3
Atru.chr3.1897 Acer truncatum HOM05D000003 ORTHO05D000651 2.9e-13 79.0 121 32.2
Atru.chr11.94 Acer truncatum HOM05D005989 ORTHO05D000022 6.5e-13 77.8 121 33.1
Atru.chr8.108 Acer truncatum HOM05D000003 ORTHO05D000022 1.5e-12 76.6 106 31.1
Prupe.1G484600 Prunus persica HOM05D005989 ORTHO05D000022 1.9e-12 76.3 105 37.1
RcHm_v2.0_Chr1g0316991 Rosa chinensis HOM05D005989 ORTHO05D000022 2.5e-12 75.9 119 31.9
RcHm_v2.0_Chr6g0259301 Rosa chinensis HOM05D000155 ORTHO05D000022 2.5e-12 75.9 120 30.8
RcHm_v2.0_Chr7g0206171 Rosa chinensis HOM05D005989 ORTHO05D000022 3.2e-12 75.5 119 31.9
RcHm_v2.0_Chr3g0465511 Rosa chinensis HOM05D000155 ORTHO05D000022 4.2e-12 75.1 102 38.2
RcHm_v2.0_Chr2g0120021 Rosa chinensis HOM05D005989 ORTHO05D000022 5.5e-12 74.7 119 31.1
RcHm_v2.0_Chr2g0140031 Rosa chinensis HOM05D000003 ORTHO05D000004 5.5e-12 74.7 115 31.3
Atru.chr11.245 Acer truncatum HOM05D005989 ORTHO05D000022 9.4e-12 73.9 97 38.1
FvH4_3g24991 Fragaria vesca HOM05D005989 ORTHO05D000022 1.2e-11 73.6 86 41.9
RcHm_v2.0_Chr4g0417481 Rosa chinensis HOM05D005989 ORTHO05D000022 1.6e-11 73.2 102 36.3
RcHm_v2.0_Chr5g0000531 Rosa chinensis HOM05D000985 ORTHO05D011902 1.6e-11 73.2 109 35.8
TPR.G23861 Trifolium pratense HOM05D005989 ORTHO05D000022 1.6e-11 73.2 90 41.1
Atru.chr7.890 Acer truncatum HOM05D005989 ORTHO05D000022 2.1e-11 72.8 121 32.2
RcHm_v2.0_Chr1g0357231 Rosa chinensis HOM05D000003 ORTHO05D000004 2.1e-11 72.8 102 34.3
TPR.G18660 Trifolium pratense HOM05D005989 ORTHO05D000022 2.1e-11 72.8 120 33.3
Aqoxy1G02708 Aquilegia oxysepala HOM05D000003 ORTHO05D000651 3.6e-11 72.0 109 36.7
Aqoxy2G01848 Aquilegia oxysepala HOM05D000003 ORTHO05D000651 3.6e-11 72.0 109 34.9
FvH4_3g39131 Fragaria vesca HOM05D005989 ORTHO05D000022 6.1e-11 71.2 86 37.2
FvH4_7g14701 Fragaria vesca HOM05D000021 ORTHO05D000010 8.0e-11 70.9 119 32.8
Lalb_Chr08g0232201 Lupinus albus HOM05D005989 ORTHO05D000022 8.0e-11 70.9 79 41.8
RcHm_v2.0_Chr2g0133661 Rosa chinensis HOM05D000155 ORTHO05D000022 8.0e-11 70.9 102 34.3
Atru.chr9.329 Acer truncatum HOM05D005989 ORTHO05D000022 1.0e-10 70.5 88 34.1
TPR.G36653 Trifolium pratense HOM05D000003 ORTHO05D000006 1.0e-10 70.5 93 36.6
Medtr8g479410 Medicago truncatula HOM05D005989 ORTHO05D000022 1.4e-10 70.1 76 39.5
RcHm_v2.0_Chr3g0462451 Rosa chinensis HOM05D005989 ORTHO05D000022 2.3e-10 69.3 104 32.7
PSO832G3439 Papaver somniferum HOM05D005989 ORTHO05D000022 3.0e-10 68.9 101 35.6
Psat1g101960 Pisum sativum HOM05D000003 ORTHO05D000007 8.8e-10 67.4 99 37.4
Medtr1g083630 Medicago truncatula HOM05D000008 ORTHO05D000005 1.2e-09 67.0 54 51.9
RcHm_v2.0_Chr4g0393351 Rosa chinensis HOM05D000155 ORTHO05D000022 1.2e-09 67.0 122 32.8
Aqoxy4G01096 Aquilegia oxysepala HOM05D000003 ORTHO05D000651 3.4e-09 65.5 88 38.6
FvH4_6g51131 Fragaria vesca HOM05D000155 ORTHO05D000022 3.4e-09 65.5 97 33.0
Lalb_Chr02g0160271 Lupinus albus HOM05D005989 ORTHO05D000022 3.4e-09 65.5 86 37.2
Medtr6g061220 Medicago truncatula HOM05D005989 ORTHO05D000022 4.4e-09 65.1 71 46.5
PSO063G2465 Papaver somniferum HOM05D005989 ORTHO05D000022 5.7e-09 64.7 105 34.3
PSO541G4268 Papaver somniferum HOM05D005989 ORTHO05D000022 5.7e-09 64.7 104 32.7
Atru.chr5.427 Acer truncatum HOM05D000155 ORTHO05D000022 9.8e-09 63.9 121 31.4
Aqoxy4G00624 Aquilegia oxysepala HOM05D000003 ORTHO05D000651 9.8e-09 63.9 101 33.7
RcHm_v2.0_Chr7g0237631 Rosa chinensis HOM05D005989 ORTHO05D000022 9.8e-09 63.9 85 30.6
COL.COLO4_19293 Corchorus olitorius HOM05D000155 ORTHO05D000022 1.3e-08 63.5 127 35.4
RcHm_v2.0_Chr6g0251621 Rosa chinensis HOM05D000155 ORTHO05D000022 2.8e-08 62.4 99 32.3
RcHm_v2.0_Chr6g0299951 Rosa chinensis HOM05D005989 ORTHO05D000022 2.8e-08 62.4 79 35.4
TPR.G20228 Trifolium pratense HOM05D005989 ORTHO05D000022 2.8e-08 62.4 44 61.4
FvH4_2g01462 Fragaria vesca HOM05D005989 ORTHO05D000022 3.7e-08 62.0 119 28.6
Medtr2g033485 Medicago truncatula HOM05D005989 ORTHO05D000022 4.9e-08 61.6 56 50.0
RcHm_v2.0_Chr3g0472841 Rosa chinensis HOM05D000155 ORTHO05D000022 6.3e-08 61.2 93 34.4
Lalb_Chr23g0276181 Lupinus albus HOM05D005989 ORTHO05D000022 8.3e-08 60.8 111 33.3
RcHm_v2.0_Chr5g0016091 Rosa chinensis HOM05D005989 ORTHO05D020750 1.1e-07 60.5 105 33.3
Medtr8g076430 Medicago truncatula HOM05D005989 ORTHO05D000022 1.8e-07 59.7 57 49.1
Aqoxy4G00597 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 2.4e-07 59.3 107 31.8
Medtr7g035440 Medicago truncatula HOM05D005989 ORTHO05D000022 2.4e-07 59.3 55 47.3
Atru.chr8.558 Acer truncatum HOM05D000003 ORTHO05D000022 3.1e-07 58.9 75 30.7
Lalb_Chr07g0188801 Lupinus albus HOM05D005989 ORTHO05D000022 3.1e-07 58.9 121 29.8
Atru.chr5.433 Acer truncatum HOM05D005989 ORTHO05D000022 4.1e-07 58.5 91 33.0
Aqoxy5G02924 Aquilegia oxysepala HOM05D000003 ORTHO05D000651 4.1e-07 58.5 92 33.7
Aqoxy1G02491 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 5.4e-07 58.2 92 32.6
RcHm_v2.0_Chr6g0263381 Rosa chinensis HOM05D000155 ORTHO05D000022 9.2e-07 57.4 97 30.9
Lalb_Chr06g0169621 Lupinus albus HOM05D005989 ORTHO05D000022 1.6e-06 56.6 76 32.9
Aqoxy1G04169 Aquilegia oxysepala HOM05D000003 ORTHO05D000651 2.7e-06 55.8 96 32.3
Aqoxy4G01484 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 2.7e-06 55.8 85 36.5
Aqoxy6G02318 Aquilegia oxysepala HOM05D000045 ORTHO05D000067 2.7e-06 55.8 102 30.4
Aqoxy1G02953 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 3.5e-06 55.5 92 31.5
Nn1g06818 Nelumbo nucifera HOM05D000155 ORTHO05D000022 3.5e-06 55.5 103 30.1
SEGI_14515 Sequoiadendron giganteum HOM05D004798 ORTHO05D005809 3.5e-06 55.5 102 27.5
PSO591G0011 Papaver somniferum HOM05D012095 ORTHO05D013621 4.5e-06 55.1 127 28.3
Psat4g109600 Pisum sativum HOM05D000351 ORTHO05D000250 4.5e-06 55.1 59 42.4
PSO111G0053 Papaver somniferum HOM05D000003 ORTHO05D000651 5.9e-06 54.7 91 36.3
Aqoxy2G01515 Aquilegia oxysepala HOM05D000003 ORTHO05D000651 7.7e-06 54.3 84 36.9
Aqoxy4G01322 Aquilegia oxysepala HOM05D000003 ORTHO05D000651 7.7e-06 54.3 92 32.6
Lalb_Chr18g0059991 Lupinus albus HOM05D000155 ORTHO05D000022 7.7e-06 54.3 104 34.6
Medtr8g069665 Medicago truncatula HOM05D000111 ORTHO05D000022 7.7e-06 54.3 84 40.5
Nitab4.5_0001387g0100 Nicotiana tabacum HOM05D024027 ORTHO05D000022 7.7e-06 54.3 82 39.0
RcHm_v2.0_Chr3g0472791 Rosa chinensis HOM05D000155 ORTHO05D000022 7.7e-06 54.3 87 31.0


User provided reference genes

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