Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G16739 Trifolium pratense HOM05D003803 ORTHO05D004456 6.7e-69 263.8 130 100.0
Medtr8g021170 Medicago truncatula HOM05D003803 ORTHO05D004456 3.5e-41 171.8 103 83.5
Psat4g168440 Pisum sativum HOM05D003803 ORTHO05D004456 8.9e-37 157.1 88 87.5
Glyma.07G040200 Glycine max HOM05D003803 ORTHO05D004456 3.2e-34 148.7 101 72.3
Lalb_Chr04g0263591 Lupinus albus HOM05D003803 ORTHO05D004456 5.4e-26 121.3 105 61.9
Atru.chr1.4007 Acer truncatum HOM05D003803 ORTHO05D004456 5.4e-18 94.7 68 67.6
QL05p003994 Quercus lobata HOM05D003803 ORTHO05D004456 1.6e-17 93.2 102 47.1
Manes.11G018700 Manihot esculenta HOM05D003803 ORTHO05D004456 1.3e-16 90.1 63 66.7
COL.COLO4_30738 Corchorus olitorius HOM05D003803 ORTHO05D004456 8.7e-16 87.4 66 62.1
Lj6g0024210 Lotus japonicus HOM05D003803 ORTHO05D004456 8.7e-16 87.4 76 60.5
Hma1.2p1_0169F.1_g074460 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 1.9e-15 86.3 61 67.2
Lsat_1_v5_gn_4_94241 Lactuca sativa HOM05D003803 ORTHO05D004456 2.5e-15 85.9 101 49.5
Potri.006G141100 Populus trichocarpa HOM05D003803 ORTHO05D004456 9.6e-15 84.0 67 59.7
Dinv25550 Davidia involucrata HOM05D003803 ORTHO05D004456 1.6e-14 83.2 118 41.5
Sopen07g021560 Solanum pennellii HOM05D003803 ORTHO05D004456 1.6e-14 83.2 89 52.8
Glyma.09G070100 Glycine max HOM05D003803 ORTHO05D004456 2.8e-14 82.4 70 58.6
CiPaw.03G205300 Carya illinoinensis HOM05D003803 ORTHO05D004456 3.6e-14 82.0 67 56.7
Solyc07g041980.3 Solanum lycopersicum HOM05D003803 ORTHO05D004456 3.6e-14 82.0 69 59.4
Manes.16G094800 Manihot esculenta HOM05D003803 ORTHO05D004456 6.2e-14 81.3 67 56.7
Nn8g38618 Nelumbo nucifera HOM05D003803 ORTHO05D004456 6.2e-14 81.3 91 50.5
Thecc.09G075700 Theobroma cacao HOM05D003803 ORTHO05D004456 8.1e-14 80.9 67 58.2
Duzib168G2099 Durio zibethinus HOM05D003803 ORTHO05D004456 1.1e-13 80.5 67 56.7
HanXRQChr09g0276811 Helianthus annuus HOM05D003803 ORTHO05D004456 1.4e-13 80.1 87 52.9
QL11p000998 Quercus lobata HOM05D003803 ORTHO05D004456 1.4e-13 80.1 78 51.3
TAR624G1266 Trochodendron aralioides HOM05D003803 ORTHO05D004456 1.8e-13 79.7 68 55.9
CAN.G595.3 Capsicum annuum HOM05D003803 ORTHO05D004456 2.4e-13 79.3 74 54.1
MELO3C015527.2 Cucumis melo HOM05D003803 ORTHO05D004456 2.4e-13 79.3 81 51.9
Medtr2g042200 Medicago truncatula HOM05D003803 ORTHO05D004456 2.4e-13 79.3 70 55.7
TWI34G0129 Tripterygium wilfordii HOM05D003803 ORTHO05D004456 5.3e-13 78.2 77 51.9
Dinv42400 Davidia involucrata HOM05D003803 ORTHO05D004456 6.9e-13 77.8 61 57.4
Lalb_Chr13g0299401 Lupinus albus HOM05D003803 ORTHO05D004456 6.9e-13 77.8 67 55.2
Sabra06G0110200 Salix brachista HOM05D003803 ORTHO05D004456 6.9e-13 77.8 67 55.2
CANSAT56G4286 Cannabis sativa HOM05D003803 ORTHO05D004456 9.0e-13 77.4 83 49.4
CiPaw.04G142500 Carya illinoinensis HOM05D003803 ORTHO05D004456 9.0e-13 77.4 83 48.2
ClCG03G015020 Citrullus lanatus HOM05D003803 ORTHO05D004456 9.0e-13 77.4 81 49.4
CsaV3_2G001120 Cucumis sativus L. HOM05D003803 ORTHO05D004456 9.0e-13 77.4 67 56.7
Eucgr.C03259 Eucalyptus grandis HOM05D003803 ORTHO05D004456 9.0e-13 77.4 61 60.7
Manes.03G041000 Manihot esculenta HOM05D003803 ORTHO05D004456 9.0e-13 77.4 67 53.7
Nn6g35693 Nelumbo nucifera HOM05D003803 ORTHO05D004456 9.0e-13 77.4 76 55.3
Actinidia30227 Actinidia chinensis HOM05D003803 ORTHO05D004456 1.2e-12 77.0 83 48.2
Oeu007415.1 Olea europaea HOM05D003803 ORTHO05D004456 1.2e-12 77.0 81 50.6
MSTRG.26474 Avicennia marina HOM05D003803 ORTHO05D004456 1.5e-12 76.6 83 50.6
Lj4g0012858 Lotus japonicus HOM05D003803 ORTHO05D004456 1.5e-12 76.6 62 56.5
GSVIVG01015067001 Vitis vinifera HOM05D003803 ORTHO05D004456 1.5e-12 76.6 107 46.7
MELO3C004657.2 Cucumis melo HOM05D003803 ORTHO05D004456 2.0e-12 76.3 65 56.9
Lalb_Chr07g0181211 Lupinus albus HOM05D003803 ORTHO05D004456 2.0e-12 76.3 83 51.8
Nitab4.5_0000343g0290 Nicotiana tabacum HOM05D003803 ORTHO05D004456 2.0e-12 76.3 67 56.7
RcHm_v2.0_Chr2g0095321 Rosa chinensis HOM05D003803 ORTHO05D004456 2.0e-12 76.3 68 52.9
TPR.G8075 Trifolium pratense HOM05D003803 ORTHO05D004456 2.0e-12 76.3 70 54.3
Actinidia39653 Actinidia chinensis HOM05D003803 ORTHO05D004456 2.6e-12 75.9 65 56.9
Glyma.15G178100 Glycine max HOM05D003803 ORTHO05D004456 2.6e-12 75.9 68 55.9
Sed0026577 Sechium edule HOM05D003803 ORTHO05D004456 2.6e-12 75.9 68 58.8
TPR.G12599 Trifolium pratense HOM05D003803 ORTHO05D004456 2.6e-12 75.9 62 54.8
C03p11700 Brassica napus HOM05D003803 ORTHO05D004456 3.4e-12 75.5 82 45.1
BolC3t13641H Brassica oleracea HOM05D003803 ORTHO05D004456 3.4e-12 75.5 82 45.1
ECA232G3825 Erigeron canadensis HOM05D003803 ORTHO05D004456 3.4e-12 75.5 102 46.1
FvH4_1g08850 Fragaria vesca HOM05D003803 ORTHO05D004456 4.4e-12 75.1 68 51.5
Peaxi162Scf00348g00817 Petunia axillaris HOM05D003803 ORTHO05D004456 4.4e-12 75.1 65 56.9
Prupe.7G197000 Prunus persica HOM05D003803 ORTHO05D004456 4.4e-12 75.1 67 52.2
MD02G1093600 Malus domestica HOM05D003803 ORTHO05D004456 5.8e-12 74.7 67 53.7
MD15G1218900 Malus domestica HOM05D003803 ORTHO05D004456 5.8e-12 74.7 67 52.2
Psat4g018440 Pisum sativum HOM05D003803 ORTHO05D004456 5.8e-12 74.7 62 54.8
Thecc.06G122400 Theobroma cacao HOM05D003803 ORTHO05D004456 5.8e-12 74.7 52 71.2
VMungo1215G1786 Vigna mungo HOM05D003803 ORTHO05D004456 5.8e-12 74.7 83 48.2
PSO104G0196 Papaver somniferum HOM05D003803 ORTHO05D004456 7.6e-12 74.3 69 52.2
Phvul.003G130200 Phaseolus vulgaris HOM05D003803 ORTHO05D004456 7.6e-12 74.3 83 48.2
Psat1g134600 Pisum sativum HOM05D003803 ORTHO05D004456 7.6e-12 74.3 62 54.8
Potri.018G062400 Populus trichocarpa HOM05D003803 ORTHO05D004456 7.6e-12 74.3 76 48.7
Carub.0006s1897 Capsella rubella HOM05D003803 ORTHO05D004456 9.9e-12 73.9 83 47.0
CARHR192170 Cardamine hirsuta HOM05D003803 ORTHO05D004456 9.9e-12 73.9 61 55.7
Gohir.A06G077000 Gossypium hirsutum HOM05D003803 ORTHO05D004456 9.9e-12 73.9 62 58.1
PSO421G0234 Papaver somniferum HOM05D003803 ORTHO05D004456 9.9e-12 73.9 69 52.2
Cpa.g.sc28.25 Carica papaya HOM05D003803 ORTHO05D004456 1.3e-11 73.6 65 53.8
FAN28G2731 Fragaria x ananassa HOM05D003803 ORTHO05D004456 1.3e-11 73.6 90 45.6
Gorai.010G088900 Gossypium raimondii HOM05D003803 ORTHO05D004456 1.3e-11 73.6 62 58.1
HPP92_004363 Vanilla planifolia HOM05D003803 ORTHO05D004456 1.3e-11 73.6 62 54.8
Aqoxy7G01029 Aquilegia oxysepala HOM05D003803 ORTHO05D004456 1.7e-11 73.2 81 49.4
Glyma.17G048600 Glycine max HOM05D003803 ORTHO05D004456 1.7e-11 73.2 77 49.4
Gohir.A13G190300 Gossypium hirsutum HOM05D003803 ORTHO05D004456 1.7e-11 73.2 88 46.6
Gohir.D13G196350 Gossypium hirsutum HOM05D003803 ORTHO05D004456 1.7e-11 73.2 88 46.6
Gorai.013G223800 Gossypium raimondii HOM05D003803 ORTHO05D004456 1.7e-11 73.2 88 46.6
Migut.L01571 Erythranthe guttata HOM05D003803 ORTHO05D004456 2.2e-11 72.8 78 52.6
Thhalv10014548m.g Eutrema salsugineum HOM05D003803 ORTHO05D004456 2.2e-11 72.8 61 54.1
Gohir.D06G076000 Gossypium hirsutum HOM05D003803 ORTHO05D004456 2.2e-11 72.8 62 58.1
Sp6g23850 Schrenkiella parvula HOM05D003803 ORTHO05D004456 2.2e-11 72.8 61 54.1
HPP92_016238 Vanilla planifolia HOM05D003803 ORTHO05D004456 2.2e-11 72.8 96 43.8
ATR0598G175 Amborella trichopoda HOM05D003803 ORTHO05D004456 2.9e-11 72.4 97 43.3
TWI63G1012 Tripterygium wilfordii HOM05D003803 ORTHO05D004456 2.9e-11 72.4 61 54.1
arahy.Tifrunner.gnm1.ann1.1Y26QK Arachis hypogaea HOM05D003803 ORTHO05D004456 3.8e-11 72.0 100 42.0
arahy.Tifrunner.gnm1.ann1.KPGD7J Arachis hypogaea HOM05D003803 ORTHO05D004456 3.8e-11 72.0 100 42.0
Ciclev10010564m.g Citrus clementina HOM05D003803 ORTHO05D004456 3.8e-11 72.0 61 55.7
A03p10180 Brassica napus HOM05D003803 ORTHO05D004456 4.9e-11 71.6 82 45.1
BraA03t10328Z Brassica rapa HOM05D003803 ORTHO05D004456 4.9e-11 71.6 82 45.1
CDE05G2490 Ceratophyllum demersum HOM05D003803 ORTHO05D004456 4.9e-11 71.6 62 59.7
Haze_16046 Corylus avellana HOM05D000015 ORTHO05D000249 4.9e-11 71.6 54 68.5
Os03g0407400 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 4.9e-11 71.6 83 43.4
Sc15g0000470 Simmondsia chinensis HOM05D003803 ORTHO05D004456 4.9e-11 71.6 75 53.3
BcaB01g04775 Brassica carinata HOM05D003803 ORTHO05D004456 6.4e-11 71.2 82 43.9
A02p06390 Brassica napus HOM05D003803 ORTHO05D004456 6.4e-11 71.2 61 52.5
A10p19380 Brassica napus HOM05D003803 ORTHO05D004456 6.4e-11 71.2 61 52.5
BolC2t07055H Brassica oleracea HOM05D003803 ORTHO05D004456 6.4e-11 71.2 61 52.5
BraA02t05584Z Brassica rapa HOM05D003803 ORTHO05D004456 6.4e-11 71.2 61 52.5
Gorai.001G015700 Gossypium raimondii HOM05D003803 ORTHO05D004456 6.4e-11 71.2 67 52.2
Hma1.2p1_0179F.1_g079480 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 6.4e-11 71.2 52 59.6
FAN26G0190 Fragaria x ananassa HOM05D003803 ORTHO05D004456 8.4e-11 70.9 61 54.1
THA.LOC104799616 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 1.1e-10 70.5 61 54.1
AL6G32180 Arabidopsis lyrata HOM05D003803 ORTHO05D004456 1.9e-10 69.7 61 52.5
PGR044G0570 Punica granatum HOM05D003803 ORTHO05D004456 1.9e-10 69.7 65 52.3
SalBow5G3024 Salvia bowleyana HOM05D003803 ORTHO05D004456 1.9e-10 69.7 78 48.7
SalBow5G4531 Salvia bowleyana HOM05D003803 ORTHO05D004456 1.9e-10 69.7 78 48.7
Duzib150G1133 Durio zibethinus HOM05D003803 ORTHO05D004456 2.4e-10 69.3 67 50.7
Atru.chr7.1717 Acer truncatum HOM05D003803 ORTHO05D004456 3.2e-10 68.9 50 62.0
AT5G20635 Arabidopsis thaliana HOM05D003803 ORTHO05D004456 3.2e-10 68.9 61 52.5
FAN23G2205 Fragaria x ananassa HOM05D003803 ORTHO05D004456 3.2e-10 68.9 55 56.4
Oeu000278.1 Olea europaea HOM05D003803 ORTHO05D004456 3.2e-10 68.9 54 57.4
Sed0004681 Sechium edule HOM05D003803 ORTHO05D004456 3.2e-10 68.9 83 43.4
BcaB08g36515 Brassica carinata HOM05D003803 ORTHO05D004456 4.2e-10 68.6 64 46.9
Ca_02184_v3 Cicer arietinum L. HOM05D003803 ORTHO05D004456 4.2e-10 68.6 53 60.4
Cc06_g12240 Coffea canephora HOM05D003803 ORTHO05D004456 4.2e-10 68.6 61 52.5
Duzib187G1358 Durio zibethinus HOM05D003803 ORTHO05D004456 4.2e-10 68.6 67 52.2
FAN19G2912 Fragaria x ananassa HOM05D003803 ORTHO05D004456 4.2e-10 68.6 53 58.5
Os08g0456600 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 4.2e-10 68.6 61 49.2
Gohir.A07G015200 Gossypium hirsutum HOM05D003803 ORTHO05D004456 7.1e-10 67.8 67 50.7
SEGI_34897 Sequoiadendron giganteum HOM05D003803 ORTHO05D004456 7.1e-10 67.8 82 45.1
CsaV3_1G041120 Cucumis sativus L. HOM05D003803 ORTHO05D004456 9.3e-10 67.4 72 51.4
Zm00001eb019600 Zea mays HOM05D003803 ORTHO05D004456 9.3e-10 67.4 87 42.5
Sc18g0002620 Simmondsia chinensis HOM05D003803 ORTHO05D004456 2.1e-09 66.2 63 52.4
THA.LOC104810996 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 2.1e-09 66.2 61 47.5
Hund26046 Selenicereus undatus HOM05D003803 ORTHO05D004456 3.5e-09 65.5 58 55.2
Zm00001eb100230 Zea mays HOM05D003803 ORTHO05D004456 3.5e-09 65.5 69 47.8
Actinidia29937 Actinidia chinensis HOM05D003803 ORTHO05D004456 4.6e-09 65.1 54 53.7
SEGI_33452 Sequoiadendron giganteum HOM05D003803 ORTHO05D004456 6.0e-09 64.7 72 47.2
MSTRG.10505 Avicennia marina HOM05D003803 ORTHO05D004456 7.8e-09 64.3 71 50.7
BraA10t44015Z Brassica rapa HOM05D003803 ORTHO05D004456 7.8e-09 64.3 74 45.9
Zm00001eb314160 Zea mays HOM05D003803 ORTHO05D004456 1.0e-08 63.9 69 46.4
C09p55600 Brassica napus HOM05D003803 ORTHO05D004456 3.0e-08 62.4 52 51.9
Lalb_Chr11g0074261 Lupinus albus HOM05D003803 ORTHO05D004456 3.0e-08 62.4 66 48.5
arahy.Tifrunner.gnm1.ann1.AJ3133 Arachis hypogaea HOM05D003803 ORTHO05D004456 5.1e-08 61.6 83 42.2
arahy.Tifrunner.gnm1.ann1.TX00RK Arachis hypogaea HOM05D003803 ORTHO05D004456 5.1e-08 61.6 83 42.2
Glyma.13G110900 Glycine max HOM05D003803 ORTHO05D004456 6.6e-08 61.2 57 50.9
HanXRQChr10g0319741 Helianthus annuus HOM05D003803 ORTHO05D004456 1.1e-07 60.5 72 45.8
Sed0024871 Sechium edule HOM05D003803 ORTHO05D004456 2.5e-07 59.3 66 47.0
SGA_v2.0_scaffold21G09503 Striga asiatica HOM05D003803 ORTHO05D004456 2.5e-07 59.3 50 56.0
Os09g0441900 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 3.3e-07 58.9 67 46.3
SGA_v2.0_scaffold609G53181 Striga asiatica HOM05D003803 ORTHO05D004456 7.3e-07 57.8 63 46.0
BolC9t58422H Brassica oleracea HOM05D003803 ORTHO05D004456 1.3e-06 57.0 68 42.6
Rhsim03G0227100 Rhododendron simsii HOM05D003803 ORTHO05D004456 2.8e-06 55.8 57 47.4
ClCG11G001400 Citrullus lanatus HOM05D003803 ORTHO05D004456 8.1e-06 54.3 104 34.6


User provided reference genes

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