Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G16728 Trifolium pratense HOM05D000371 ORTHO05D006177 1.2e-35 152.5 73 100.0
Glyma.03G073714 Glycine max HOM05D000371 ORTHO05D006177 1.0e-34 149.4 73 95.9
Glyma.01G106600 Glycine max HOM05D000371 ORTHO05D006177 2.3e-34 148.3 73 94.5
Ca_03543_v3 Cicer arietinum L. HOM05D000371 ORTHO05D006177 1.5e-33 145.6 73 94.5
Lalb_Chr07g0193201 Lupinus albus HOM05D000371 ORTHO05D006177 2.0e-33 145.2 73 91.8
Psat7g241000 Pisum sativum HOM05D000371 ORTHO05D006177 2.0e-33 145.2 73 93.2
Medtr4g055500 Medicago truncatula HOM05D000371 ORTHO05D006177 2.6e-33 144.8 73 91.8
LjContig00047_ERROPOS266959g0016401 Lotus japonicus HOM05D000371 ORTHO05D006177 7.5e-33 143.3 73 93.2
arahy.Tifrunner.gnm1.ann1.23E1K9 Arachis hypogaea HOM05D000371 ORTHO05D006177 4.8e-32 140.6 73 89.0
Phvul.007G249700 Phaseolus vulgaris HOM05D000371 ORTHO05D006177 4.8e-32 140.6 73 90.4
VMungo0720G2985 Vigna mungo HOM05D000371 ORTHO05D006177 1.1e-31 139.4 73 89.0
arahy.Tifrunner.gnm1.ann1.YWW12F Arachis hypogaea HOM05D000371 ORTHO05D006177 1.8e-31 138.7 72 88.9
CiPaw.10G150300 Carya illinoinensis HOM05D000371 ORTHO05D006177 2.4e-31 138.3 73 86.3
CANSAT01G2772 Cannabis sativa HOM05D000371 ORTHO05D006177 5.3e-31 137.1 73 84.9
Cfa017293 Carpinus fangiana HOM05D000371 ORTHO05D006177 7.0e-31 136.7 73 84.9
MD04G1140300 Malus domestica HOM05D000371 ORTHO05D006177 1.2e-30 136.0 73 82.2
Prupe.6G265400 Prunus persica HOM05D000371 ORTHO05D006177 1.2e-30 136.0 73 82.2
MD12G1155600 Malus domestica HOM05D000371 ORTHO05D006177 1.6e-30 135.6 73 80.8
Ciclev10011305m.g Citrus clementina HOM05D000371 ORTHO05D006177 2.2e-29 131.7 73 80.8
TAR623G0600 Trochodendron aralioides HOM05D000371 ORTHO05D006177 2.2e-29 131.7 73 80.8
Cpa.g.sc56.67 Carica papaya HOM05D000371 ORTHO05D006177 5.0e-29 130.6 73 80.8
ClCG04G007520 Citrullus lanatus HOM05D000371 ORTHO05D006177 5.0e-29 130.6 73 79.5
MELO3C003198.2 Cucumis melo HOM05D000371 ORTHO05D006177 5.0e-29 130.6 73 79.5
Eucgr.C00633 Eucalyptus grandis HOM05D000371 ORTHO05D006177 8.5e-29 129.8 73 79.5
Sed0006661 Sechium edule HOM05D000371 ORTHO05D006177 8.5e-29 129.8 73 80.8
Aa31LG10G8800 Aethionema arabicum HOM05D000371 ORTHO05D006177 1.1e-28 129.4 73 76.7
CsaV3_4G025730 Cucumis sativus L. HOM05D000371 ORTHO05D006177 1.1e-28 129.4 73 79.5
Thecc.05G027800 Theobroma cacao HOM05D000371 ORTHO05D006177 1.1e-28 129.4 73 79.5
FvH4_6g12640 Fragaria vesca HOM05D000371 ORTHO05D006177 1.5e-28 129.0 73 79.5
FAN05G2038 Fragaria x ananassa HOM05D000371 ORTHO05D006177 1.5e-28 129.0 73 79.5
FAN09G2403 Fragaria x ananassa HOM05D000371 ORTHO05D006177 1.5e-28 129.0 73 79.5
FAN14G4066 Fragaria x ananassa HOM05D000371 ORTHO05D006177 1.5e-28 129.0 73 79.5
Nitab4.5_0006562g0050 Nicotiana tabacum HOM05D000371 ORTHO05D006177 1.5e-28 129.0 73 78.1
Solyc11g011420.3 Solanum lycopersicum HOM05D000371 ORTHO05D006177 3.2e-28 127.9 73 78.1
Sopen11g006220 Solanum pennellii HOM05D000371 ORTHO05D006177 3.2e-28 127.9 73 78.1
Duzib093G0786 Durio zibethinus HOM05D000371 ORTHO05D006177 4.2e-28 127.5 73 78.1
Nitab4.5_0001650g0040 Nicotiana tabacum HOM05D000371 ORTHO05D006177 5.5e-28 127.1 73 76.7
TWI74G1022 Tripterygium wilfordii HOM05D000371 ORTHO05D006177 5.5e-28 127.1 73 75.3
Gohir.D09G157300 Gossypium hirsutum HOM05D000371 ORTHO05D006177 7.2e-28 126.7 73 78.1
Gorai.006G178900 Gossypium raimondii HOM05D000371 ORTHO05D006177 7.2e-28 126.7 73 78.1
CAN.G222.59 Capsicum annuum HOM05D000371 ORTHO05D006177 9.4e-28 126.3 71 78.9
Duzib106G1179 Durio zibethinus HOM05D000371 ORTHO05D006177 9.4e-28 126.3 73 76.7
Os03g0367000 Oryza sativa ssp. japonica HOM05D000371 ORTHO05D006177 9.4e-28 126.3 73 72.6
SGA_v2.0_scaffold273G46441 Striga asiatica HOM05D000371 ORTHO05D006177 9.4e-28 126.3 73 79.5
PGR031G1276 Punica granatum HOM05D000371 ORTHO05D006177 1.6e-27 125.6 73 76.7
RcHm_v2.0_Chr3g0464491 Rosa chinensis HOM05D000371 ORTHO05D006177 1.6e-27 125.6 73 75.3
SalBow8G2887 Salvia bowleyana HOM05D000371 ORTHO05D006177 1.6e-27 125.6 72 80.6
SGA_v2.0_scaffold85G26809 Striga asiatica HOM05D000371 ORTHO05D006177 1.6e-27 125.6 73 78.1
HPP92_018046 Vanilla planifolia HOM05D000371 ORTHO05D006177 1.6e-27 125.6 72 73.6
BcaB02g07753 Brassica carinata HOM05D000371 ORTHO05D006177 2.1e-27 125.2 73 75.3
THA.LOC104806536 Tarenaya hassleriana HOM05D000371 ORTHO05D006177 2.1e-27 125.2 73 76.7
MSTRG.5620 Avicennia marina HOM05D000371 ORTHO05D006177 2.7e-27 124.8 72 79.2
BcaB02g08493 Brassica carinata HOM05D000371 ORTHO05D006177 2.7e-27 124.8 73 75.3
Hma1.2p1_0671F.1_g200670 Hydrangea macrophylla HOM05D000371 ORTHO05D006177 2.7e-27 124.8 72 76.4
Potri.016G105100 Populus trichocarpa HOM05D000371 ORTHO05D006177 4.7e-27 124.0 73 76.7
Zm00001eb017910 Zea mays HOM05D000371 ORTHO05D006177 4.7e-27 124.0 73 72.6
AT3G54010 Arabidopsis thaliana HOM05D000371 ORTHO05D006177 6.1e-27 123.6 73 74.0
Haze_20900 Corylus avellana HOM05D000371 ORTHO05D006177 6.1e-27 123.6 91 67.0
Carub.0005s2060 Capsella rubella HOM05D000371 ORTHO05D006177 8.0e-27 123.2 73 72.6
Gohir.A09G161700 Gossypium hirsutum HOM05D000371 ORTHO05D006177 8.0e-27 123.2 73 76.7
Actinidia13813 Actinidia chinensis HOM05D000371 ORTHO05D006177 1.0e-26 122.9 73 75.3
Sp5g08380 Schrenkiella parvula HOM05D000371 ORTHO05D006177 1.0e-26 122.9 73 74.0
A04p05770 Brassica napus HOM05D002554 ORTHO05D006177 1.4e-26 122.5 73 74.0
A07p21930 Brassica napus HOM05D000371 ORTHO05D006177 1.4e-26 122.5 73 74.0
GSVIVG01034052001 Vitis vinifera HOM05D000371 ORTHO05D006177 1.4e-26 122.5 73 74.0
C04p38550 Brassica napus HOM05D002554 ORTHO05D006177 1.8e-26 122.1 73 74.0
CARHR163910 Cardamine hirsuta HOM05D000371 ORTHO05D006177 1.8e-26 122.1 73 74.0
Nn2g15155 Nelumbo nucifera HOM05D000371 ORTHO05D006177 1.8e-26 122.1 73 75.3
BcaC02g09108 Brassica carinata HOM05D000371 ORTHO05D006177 2.3e-26 121.7 73 74.0
BolC4t25430H Brassica oleracea HOM05D002554 ORTHO05D006177 2.3e-26 121.7 73 74.0
Sabra16G0104300 Salix brachista HOM05D000371 ORTHO05D006177 2.3e-26 121.7 71 78.9
Atru.chr8.2107 Acer truncatum HOM05D000371 ORTHO05D006177 3.0e-26 121.3 73 74.0
Thhalv10010196m.g Eutrema salsugineum HOM05D000371 ORTHO05D006177 3.0e-26 121.3 73 74.0
Manes.15G172300 Manihot esculenta HOM05D000371 ORTHO05D006177 4.0e-26 120.9 73 74.0
TAR369G0679 Trochodendron aralioides HOM05D000371 ORTHO05D006177 4.0e-26 120.9 73 74.0
Oeu030546.3 Olea europaea HOM05D000371 ORTHO05D006177 5.2e-26 120.6 72 75.0
Peaxi162Scf00562g00024 Petunia axillaris HOM05D000371 ORTHO05D006177 5.2e-26 120.6 71 74.6
BraA07t29874Z Brassica rapa HOM05D000371 ORTHO05D006177 8.8e-26 119.8 73 72.6
HanXRQChr06g0176681 Helianthus annuus HOM05D000371 ORTHO05D006177 8.8e-26 119.8 73 76.7
HanXRQChr10g0290801 Helianthus annuus HOM05D000371 ORTHO05D006177 8.8e-26 119.8 73 76.7
Aqoxy1G00785 Aquilegia oxysepala HOM05D000371 ORTHO05D006177 1.5e-25 119.0 73 71.2
BcaC08g44659 Brassica carinata HOM05D000371 ORTHO05D006177 1.5e-25 119.0 73 72.6
C06p21810 Brassica napus HOM05D000371 ORTHO05D006177 1.5e-25 119.0 73 72.6
MBI14_g02853_MAGBIO Magnolia biondii HOM05D000371 ORTHO05D006177 1.5e-25 119.0 71 74.6
BraA04t16273Z Brassica rapa HOM05D000371 ORTHO05D006177 2.6e-25 118.2 73 72.6
ECA236G3449 Erigeron canadensis HOM05D000371 ORTHO05D006177 3.4e-25 117.9 73 75.3
Lsat_1_v5_gn_8_80801 Lactuca sativa HOM05D000371 ORTHO05D006177 3.4e-25 117.9 71 76.1
Cc00_g16740 Coffea canephora HOM05D000371 ORTHO05D006177 5.7e-25 117.1 70 75.7
DCAR_028802 Daucus carota HOM05D000371 ORTHO05D006177 5.7e-25 117.1 73 71.2
TPR.G17889 Trifolium pratense HOM05D000371 ORTHO05D006177 5.7e-25 117.1 54 100.0
AL5G35010 Arabidopsis lyrata HOM05D000371 ORTHO05D006177 9.8e-25 116.3 73 71.2
Rhsim05G0200700 Rhododendron simsii HOM05D000371 ORTHO05D006177 1.3e-24 115.9 70 74.3
QL07p027923 Quercus lobata HOM05D000371 ORTHO05D006177 3.7e-24 114.4 70 72.9
CSS0030871 Camellia sinensis var. sinensis HOM05D000371 ORTHO05D006177 4.9e-24 114.0 72 72.2
PSO339G3206 Papaver somniferum HOM05D000371 ORTHO05D006177 6.3e-24 113.6 73 68.5
PSO384G0158 Papaver somniferum HOM05D000371 ORTHO05D006177 6.3e-24 113.6 73 68.5
Ah.04g166090 Amaranthus hybridus HOM05D000371 ORTHO05D006177 1.8e-23 112.1 73 69.9
CSS0040865 Camellia sinensis var. sinensis HOM05D000371 ORTHO05D006177 2.4e-23 111.7 70 72.9
QL06p037270 Quercus lobata HOM05D000371 ORTHO05D006177 2.4e-23 111.7 79 69.6
EL10Ac4g07709 Beta vulgaris HOM05D000371 ORTHO05D006177 4.1e-23 110.9 73 67.1
SHI12744 Sapria himalayana HOM05D000371 ORTHO05D006177 5.4e-23 110.5 69 71.0
ATR0210G001 Amborella trichopoda HOM05D000371 ORTHO05D006177 7.0e-23 110.2 73 69.9
vmacro20202 Vaccinium macrocarpon HOM05D000371 ORTHO05D006177 1.6e-22 109.0 70 70.0
CDE04G0830 Ceratophyllum demersum HOM05D000371 ORTHO05D006177 2.0e-22 108.6 73 68.5
AUR62020358 Chenopodium quinoa HOM05D000371 ORTHO05D006177 1.0e-21 106.3 72 68.1
AUR62026129 Chenopodium quinoa HOM05D000371 ORTHO05D006177 1.3e-21 105.9 72 66.7
COL.COLO4_34281 Corchorus olitorius HOM05D000371 ORTHO05D006177 1.3e-21 105.9 73 68.5
AUR62015866 Chenopodium quinoa HOM05D000371 ORTHO05D006177 2.3e-21 105.1 72 66.7
Sc01g0004900 Simmondsia chinensis HOM05D000371 ORTHO05D006177 2.5e-20 101.7 60 73.3
AagrBONN_evm.TU.Sc2ySwM_228.199 Anthoceros agrestis HOM05D000371 ORTHO05D006177 8.0e-19 96.7 73 61.6
Pp3c12_8200 Physcomitrium patens HOM05D000371 ORTHO05D006177 1.4e-18 95.9 73 57.5
unitig_26.g9094 Utricularia gibba HOM05D000371 ORTHO05D006177 3.0e-18 94.7 67 61.2
Lj3C959T17 Lonicera japonica HOM05D000371 ORTHO05D006177 2.6e-17 91.7 49 81.6
Hund02037 Selenicereus undatus HOM05D000371 ORTHO05D006177 2.4e-15 85.1 48 72.9
Mapoly0079s0030 Marchantia polymorpha HOM05D000371 ORTHO05D006177 2.0e-14 82.0 73 46.6
SMO137G0167 Selaginella moellendorffii HOM05D000371 ORTHO05D006177 1.0e-13 79.7 72 51.4
HanXRQChr09g0258381 Helianthus annuus HOM05D000371 ORTHO05D006177 2.3e-13 78.6 47 74.5
CBR_g32496 Chara braunii HOM05D000371 ORTHO05D006177 1.4e-10 69.3 74 44.6
HanXRQChr02g0049141 Helianthus annuus HOM05D000371 ORTHO05D006177 7.5e-09 63.5 39 69.2
COL.COLO4_14682 Corchorus olitorius HOM05D000371 ORTHO05D006177 3.2e-07 58.2 32 84.4
Os01g0564300 Oryza sativa ssp. japonica HOM05D000371 ORTHO05D001484 6.0e-06 53.9 69 37.7


User provided reference genes

Program Settings