Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G16719 Trifolium pratense HOM05D004624 ORTHO05D005357 1.2e-32 142.5 71 100.0
TPR.G12609 Trifolium pratense HOM05D004624 ORTHO05D005357 4.0e-31 137.5 71 97.2
Medtr2g008230 Medicago truncatula HOM05D004624 ORTHO05D005357 2.2e-29 131.7 70 91.4
Psat0s1206g0080 Pisum sativum HOM05D004624 ORTHO05D005357 4.9e-29 130.6 70 91.4
Medtr4g124060 Medicago truncatula HOM05D004624 ORTHO05D005357 4.1e-28 127.5 70 90.0
Lj1g0004051 Lotus japonicus HOM05D004624 ORTHO05D005357 2.1e-24 115.2 70 80.0
Lj4g0019310 Lotus japonicus HOM05D004624 ORTHO05D005357 2.1e-24 115.2 70 78.6
Phvul.001G120800 Phaseolus vulgaris HOM05D004624 ORTHO05D005357 2.8e-24 114.8 70 80.0
Glyma.01G100100 Glycine max HOM05D004624 ORTHO05D005357 3.6e-24 114.4 70 80.0
Glyma.03G068900 Glycine max HOM05D004624 ORTHO05D005357 3.6e-24 114.4 70 80.0
Lalb_Chr19g0128161 Lupinus albus HOM05D004624 ORTHO05D005357 8.0e-24 113.2 70 78.6
Atru.chr12.1276 Acer truncatum HOM05D004624 ORTHO05D005357 8.9e-23 109.8 70 75.7
Ciclev10010500m.g Citrus clementina HOM05D004624 ORTHO05D005357 2.0e-22 108.6 69 76.8
Cpa.g.sc116.84 Carica papaya HOM05D004624 ORTHO05D005357 2.6e-22 108.2 71 77.5
Ca_07684_v3 Cicer arietinum L. HOM05D004624 ORTHO05D005357 2.6e-22 108.2 61 85.2
vmacro17426 Vaccinium macrocarpon HOM05D004624 ORTHO05D005357 2.6e-22 108.2 68 79.4
Hma1.2p1_0223F.1_g094210 Hydrangea macrophylla HOM05D004624 ORTHO05D005357 3.4e-22 107.8 70 75.7
Sabra06G0024000 Salix brachista HOM05D004624 ORTHO05D005357 3.4e-22 107.8 70 77.1
Cc03_g11260 Coffea canephora HOM05D004624 ORTHO05D005357 4.4e-22 107.5 75 72.0
Potri.006G035900 Populus trichocarpa HOM05D004624 ORTHO05D005357 4.4e-22 107.5 64 79.7
PGR142G2854 Punica granatum HOM05D004624 ORTHO05D005357 4.4e-22 107.5 70 77.1
TAR633G0121 Trochodendron aralioides HOM05D004624 ORTHO05D005357 4.4e-22 107.5 69 75.4
vmacro08998 Vaccinium macrocarpon HOM05D004624 ORTHO05D005357 4.4e-22 107.5 64 79.7
Cfa019982 Carpinus fangiana HOM05D004624 ORTHO05D005357 5.8e-22 107.1 69 76.8
Haze_02997 Corylus avellana HOM05D004624 ORTHO05D005357 5.8e-22 107.1 68 76.5
Dinv15634 Davidia involucrata HOM05D004624 ORTHO05D005357 5.8e-22 107.1 71 76.1
Gorai.008G288400 Gossypium raimondii HOM05D004624 ORTHO05D005357 5.8e-22 107.1 65 78.5
Lalb_Chr19g0128151 Lupinus albus HOM05D004624 ORTHO05D005357 5.8e-22 107.1 70 74.3
Potri.016G034200 Populus trichocarpa HOM05D004624 ORTHO05D005357 5.8e-22 107.1 67 79.1
Gohir.A07G114500 Gossypium hirsutum HOM05D004624 ORTHO05D005357 7.5e-22 106.7 65 78.5
GSVIVG01025772001 Vitis vinifera HOM05D004624 ORTHO05D005357 7.5e-22 106.7 69 73.9
CSS0035187 Camellia sinensis var. sinensis HOM05D004624 ORTHO05D005357 9.8e-22 106.3 69 78.3
COL.COLO4_05868 Corchorus olitorius HOM05D004624 ORTHO05D005357 9.8e-22 106.3 61 82.0
Rhsim13G0121200 Rhododendron simsii HOM05D004624 ORTHO05D005357 9.8e-22 106.3 68 76.5
Haze_20251 Corylus avellana HOM05D004624 ORTHO05D005357 1.3e-21 105.9 69 75.4
Gorai.001G127500 Gossypium raimondii HOM05D004624 ORTHO05D005357 1.3e-21 105.9 61 80.3
arahy.Tifrunner.gnm1.ann1.QE2DSJ Arachis hypogaea HOM05D004624 ORTHO05D005357 1.7e-21 105.5 64 79.7
Gohir.D07G118600 Gossypium hirsutum HOM05D004624 ORTHO05D005357 1.7e-21 105.5 61 80.3
Gohir.D12G268300 Gossypium hirsutum HOM05D004624 ORTHO05D005357 1.7e-21 105.5 65 76.9
Sabra16G0036900 Salix brachista HOM05D004624 ORTHO05D005357 1.7e-21 105.5 67 79.1
CANSAT78G0048 Cannabis sativa HOM05D004624 ORTHO05D005357 2.2e-21 105.1 64 81.2
CANSAT78G2147 Cannabis sativa HOM05D004624 ORTHO05D005357 2.2e-21 105.1 64 81.2
CiPaw.10G042300 Carya illinoinensis HOM05D004624 ORTHO05D005357 2.2e-21 105.1 72 70.8
Duzib205G0906 Durio zibethinus HOM05D004624 ORTHO05D005357 2.2e-21 105.1 61 82.0
Thecc.03G049000 Theobroma cacao HOM05D004624 ORTHO05D005357 2.2e-21 105.1 65 76.9
GSVIVG01021751001 Vitis vinifera HOM05D004624 ORTHO05D005357 2.2e-21 105.1 69 72.5
arahy.Tifrunner.gnm1.ann1.Q8D3CZ Arachis hypogaea HOM05D004624 ORTHO05D005357 3.7e-21 104.4 64 78.1
QL07p012089 Quercus lobata HOM05D004624 ORTHO05D005357 3.7e-21 104.4 58 84.5
Nn7g37680 Nelumbo nucifera HOM05D004624 ORTHO05D005357 4.9e-21 104.0 70 74.3
CSS0023921 Camellia sinensis var. sinensis HOM05D004624 ORTHO05D005357 6.4e-21 103.6 68 75.0
CSS0026932 Camellia sinensis var. sinensis HOM05D004624 ORTHO05D005357 6.4e-21 103.6 68 75.0
MD03G1113900 Malus domestica HOM05D004624 ORTHO05D005357 6.4e-21 103.6 62 80.6
DCAR_020589 Daucus carota HOM05D004624 ORTHO05D005357 8.3e-21 103.2 69 76.8
Eucgr.K01650 Eucalyptus grandis HOM05D004624 ORTHO05D005357 1.1e-20 102.8 69 73.9
Manes.15G024800 Manihot esculenta HOM05D004624 ORTHO05D005357 1.1e-20 102.8 70 71.4
TWI53G0657 Tripterygium wilfordii HOM05D004624 ORTHO05D005357 1.1e-20 102.8 69 75.4
Aqoxy3G00212 Aquilegia oxysepala HOM05D004624 ORTHO05D005357 1.4e-20 102.4 69 72.5
Sabra16G0054100 Salix brachista HOM05D004624 ORTHO05D005357 1.4e-20 102.4 70 71.4
Sed0025002 Sechium edule HOM05D004624 ORTHO05D005357 1.4e-20 102.4 64 76.6
TWI74G0338 Tripterygium wilfordii HOM05D004624 ORTHO05D005357 1.4e-20 102.4 69 75.4
ClCG11G007400 Citrullus lanatus HOM05D004624 ORTHO05D005357 1.9e-20 102.1 58 81.0
Ah.13g077180 Amaranthus hybridus HOM05D004624 ORTHO05D005357 3.2e-20 101.3 70 67.1
Cfa010947 Carpinus fangiana HOM05D004624 ORTHO05D005357 3.2e-20 101.3 58 81.0
MELO3C008583.2 Cucumis melo HOM05D004624 ORTHO05D005357 3.2e-20 101.3 58 79.3
CsaV3_2G010390 Cucumis sativus L. HOM05D004624 ORTHO05D005357 4.1e-20 100.9 58 79.3
Nitab4.5_0000021g0900 Nicotiana tabacum HOM05D004624 ORTHO05D005357 4.1e-20 100.9 68 70.6
Nitab4.5_0002193g0050 Nicotiana tabacum HOM05D004624 ORTHO05D005357 4.1e-20 100.9 70 70.0
Prupe.8G075600 Prunus persica HOM05D004624 ORTHO05D005357 4.1e-20 100.9 62 80.6
COL.COLO4_37401 Corchorus olitorius HOM05D004624 ORTHO05D005357 5.4e-20 100.5 67 74.6
DCAR_028787 Daucus carota HOM05D004624 ORTHO05D005357 5.4e-20 100.5 58 81.0
Nitab4.5_0000645g0040 Nicotiana tabacum HOM05D004624 ORTHO05D005357 5.4e-20 100.5 70 68.6
CARHR260420 Cardamine hirsuta HOM05D004624 ORTHO05D005357 7.0e-20 100.1 64 73.4
Rhsim04G0113600 Rhododendron simsii HOM05D004624 ORTHO05D005357 7.0e-20 100.1 65 76.9
RcHm_v2.0_Chr7g0222161 Rosa chinensis HOM05D004624 ORTHO05D005357 7.0e-20 100.1 63 77.8
AL6G43100 Arabidopsis lyrata HOM05D004624 ORTHO05D005357 9.2e-20 99.8 69 71.0
AT4G09550 Arabidopsis thaliana HOM05D004624 ORTHO05D005357 9.2e-20 99.8 69 71.0
AUR62030290 Chenopodium quinoa HOM05D004624 ORTHO05D005357 9.2e-20 99.8 70 67.1
Actinidia05484 Actinidia chinensis HOM05D004624 ORTHO05D005357 1.2e-19 99.4 70 74.3
FvH4_5g29300 Fragaria vesca HOM05D004624 ORTHO05D005357 1.2e-19 99.4 69 71.0
FAN13G0550 Fragaria x ananassa HOM05D004624 ORTHO05D005357 1.2e-19 99.4 69 71.0
FAN18G4513 Fragaria x ananassa HOM05D004624 ORTHO05D005357 1.2e-19 99.4 69 71.0
Peaxi162Scf00516g00035 Petunia axillaris HOM05D004624 ORTHO05D005357 1.2e-19 99.4 64 71.9
Thecc.05G198400 Theobroma cacao HOM05D004624 ORTHO05D005357 1.2e-19 99.4 66 75.8
CAN.G65.122 Capsicum annuum HOM05D004624 ORTHO05D005357 1.6e-19 99.0 70 68.6
PGSC0003DMG400026480 Solanum tuberosum HOM05D004624 ORTHO05D005357 1.6e-19 99.0 58 75.9
Manes.10G062600 Manihot esculenta HOM05D004624 ORTHO05D005357 2.1e-19 98.6 69 72.5
Carub.0006s2800 Capsella rubella HOM05D004624 ORTHO05D005357 2.7e-19 98.2 63 74.6
CAN.G732.25 Capsicum annuum HOM05D004624 ORTHO05D005357 2.7e-19 98.2 64 70.3
Migut.J01633 Erythranthe guttata HOM05D004624 ORTHO05D005357 2.7e-19 98.2 74 66.2
AUR62018375 Chenopodium quinoa HOM05D004624 ORTHO05D005357 3.5e-19 97.8 70 67.1
Nitab4.5_0006270g0030 Nicotiana tabacum HOM05D004624 ORTHO05D005357 3.5e-19 97.8 70 68.6
Aa31LG4G10460 Aethionema arabicum HOM05D004624 ORTHO05D005357 4.6e-19 97.4 68 70.6
Nitab4.5_0003447g0020 Nicotiana tabacum HOM05D004624 ORTHO05D005357 4.6e-19 97.4 58 75.9
Sc13g0000990 Simmondsia chinensis HOM05D004624 ORTHO05D005357 4.6e-19 97.4 70 68.6
Cpa.g.sc883.1 Carica papaya HOM05D004624 ORTHO05D005357 6.0e-19 97.1 58 81.0
RcHm_v2.0_Chr1g0330241 Rosa chinensis HOM05D004624 ORTHO05D005357 6.0e-19 97.1 69 69.6
Sp6g08080 Schrenkiella parvula HOM05D004624 ORTHO05D005357 6.0e-19 97.1 64 70.3
THA.LOC109116606 Tarenaya hassleriana HOM05D004624 ORTHO05D005357 6.0e-19 97.1 58 79.3
BcaB03g15728 Brassica carinata HOM05D004624 ORTHO05D005357 7.8e-19 96.7 58 79.3
BcaC08g45622 Brassica carinata HOM05D004624 ORTHO05D005357 7.8e-19 96.7 58 79.3
C06p33840 Brassica napus HOM05D004624 ORTHO05D005357 7.8e-19 96.7 58 79.3
Nitab4.5_0006185g0060 Nicotiana tabacum HOM05D004624 ORTHO05D005357 7.8e-19 96.7 72 65.3
Peaxi162Scf00815g00038 Petunia axillaris HOM05D004624 ORTHO05D005357 7.8e-19 96.7 70 65.7
Sopen03g028160 Solanum pennellii HOM05D004624 ORTHO05D005357 7.8e-19 96.7 69 66.7
Aqoxy3G02929 Aquilegia oxysepala HOM05D004624 ORTHO05D005357 1.0e-18 96.3 58 79.3
FAN08G1983 Fragaria x ananassa HOM05D004624 ORTHO05D005357 1.0e-18 96.3 69 69.6
Sopen06g029060 Solanum pennellii HOM05D004624 ORTHO05D005357 1.0e-18 96.3 63 77.8
BraA07t30607Z Brassica rapa HOM05D004624 ORTHO05D005357 1.3e-18 95.9 58 79.3
Sp5g28970 Schrenkiella parvula HOM05D004624 ORTHO05D005357 1.3e-18 95.9 58 77.6
BcaC08g46798 Brassica carinata HOM05D004624 ORTHO05D005357 1.7e-18 95.5 58 77.6
C06p47930 Brassica napus HOM05D004624 ORTHO05D005357 1.7e-18 95.5 58 77.6
BolC6t39828H Brassica oleracea HOM05D004624 ORTHO05D005357 1.7e-18 95.5 58 77.6
BraA07t31513Z Brassica rapa HOM05D004624 ORTHO05D005357 1.7e-18 95.5 58 77.6
Thhalv10019414m.g Eutrema salsugineum HOM05D004624 ORTHO05D005357 2.3e-18 95.1 58 77.6
QL04p073121 Quercus lobata HOM05D004624 ORTHO05D005357 3.0e-18 94.7 55 81.8
CDE05G2943 Ceratophyllum demersum HOM05D004624 ORTHO05D005357 3.9e-18 94.4 58 75.9
BcaB03g15084 Brassica carinata HOM05D004624 ORTHO05D005357 5.1e-18 94.0 58 75.9
HanXRQChr11g0352301 Helianthus annuus HOM05D004624 ORTHO05D005357 5.1e-18 94.0 68 67.6
Migut.J01335 Erythranthe guttata HOM05D004624 ORTHO05D005357 6.6e-18 93.6 58 72.4
Migut.J01336 Erythranthe guttata HOM05D004624 ORTHO05D005357 6.6e-18 93.6 58 72.4
PSO063G3723 Papaver somniferum HOM05D004624 ORTHO05D005357 6.6e-18 93.6 70 64.3
PSO541G4755 Papaver somniferum HOM05D004624 ORTHO05D005357 8.6e-18 93.2 70 65.7
PSO675G0528 Papaver somniferum HOM05D004624 ORTHO05D005357 8.6e-18 93.2 69 63.8
ECA238G3634 Erigeron canadensis HOM05D000185 ORTHO05D000105 2.5e-17 91.7 71 66.2
ECA248G3900 Erigeron canadensis HOM05D004624 ORTHO05D005357 3.3e-17 91.3 70 64.3
Carub.0002s2054 Capsella rubella HOM05D004624 ORTHO05D005357 4.3e-17 90.9 66 66.7
SHI11762 Sapria himalayana HOM05D004624 ORTHO05D005357 4.3e-17 90.9 68 64.7
AL2G33600 Arabidopsis lyrata HOM05D004624 ORTHO05D005357 9.5e-17 89.7 58 70.7
AT1G73790 Arabidopsis thaliana HOM05D004624 ORTHO05D005357 9.5e-17 89.7 58 70.7
CARHR066880 Cardamine hirsuta HOM05D004624 ORTHO05D005357 3.6e-16 87.8 56 73.2
MBI17_g08328_MAGBIO Magnolia biondii HOM05D004624 ORTHO05D005357 4.7e-16 87.4 54 77.8
unitig_746.g26892 Utricularia gibba HOM05D004624 ORTHO05D005357 8.1e-16 86.7 67 64.2
TAR627G0533 Trochodendron aralioides HOM05D004624 ORTHO05D005357 1.4e-15 85.9 66 69.7
Atru.chr12.1164 Acer truncatum HOM05D004624 ORTHO05D005357 1.2e-14 82.8 52 73.1
EL10Ac4g09929 Beta vulgaris HOM05D004624 ORTHO05D005357 2.6e-14 81.6 55 70.9
Zm00001eb062930 Zea mays HOM05D004624 ORTHO05D005357 2.6e-14 81.6 65 60.0
Os03g0435900 Oryza sativa ssp. japonica HOM05D004624 ORTHO05D005357 3.4e-14 81.3 63 61.9
Os11g0368172 Oryza sativa ssp. japonica HOM05D004624 ORTHO05D005357 3.4e-14 81.3 63 61.9
PRCOL_00005147 Prasinoderma coloniale HOM05D004624 ORTHO05D005357 4.4e-14 80.9 58 69.0
Os03g0824000 Oryza sativa ssp. japonica HOM05D004624 ORTHO05D005357 9.9e-14 79.7 66 59.1
Pp3c13_4560 Physcomitrium patens HOM05D004624 ORTHO05D005357 9.9e-14 79.7 63 61.9
MD11G1133700 Malus domestica HOM05D004624 ORTHO05D005357 1.3e-13 79.3 45 82.2
SMO172G0211 Selaginella moellendorffii HOM05D004624 ORTHO05D005357 1.3e-13 79.3 54 72.2
FvH4_2g13790 Fragaria vesca HOM05D004624 ORTHO05D005357 1.7e-13 79.0 56 71.4
FAN24G0569 Fragaria x ananassa HOM05D004624 ORTHO05D005357 1.7e-13 79.0 56 71.4
AagrBONN_evm.TU.Sc2ySwM_340.447 Anthoceros agrestis HOM05D004624 ORTHO05D005357 2.9e-13 78.2 58 63.8
CBR_g23420 Chara braunii HOM05D004624 ORTHO05D005357 1.4e-12 75.9 70 52.9
Pp3c12_8260 Physcomitrium patens HOM05D004624 ORTHO05D005357 1.4e-12 75.9 58 65.5
Mapoly0109s0047 Marchantia polymorpha HOM05D004624 ORTHO05D005357 2.4e-12 75.1 64 57.8
SalBow6G5026 Salvia bowleyana HOM05D004624 ORTHO05D005357 5.4e-12 73.9 50 70.0
Solyc03g097400.1 Solanum lycopersicum HOM05D004624 ORTHO05D005357 1.6e-11 72.4 40 80.0
MCO02G029 Micromonas commoda HOM05D004624 ORTHO05D005357 2.1e-11 72.0 58 60.3
Solyc06g072690.3 Solanum lycopersicum HOM05D004624 ORTHO05D005357 1.7e-10 68.9 52 67.3
HPP92_018529 Vanilla planifolia HOM05D004624 ORTHO05D005357 2.3e-10 68.6 52 57.7
Cre14.g610000 Chlamydomonas reinhardtii HOM05D004624 ORTHO05D005357 2.1e-08 62.0 57 52.6
Lsat_1_v5_gn_1_43120 Lactuca sativa HOM05D004624 ORTHO05D005357 4.0e-07 57.8 32 78.1
Glyma.03G125300 Glycine max HOM05D004624 ORTHO05D005357 4.4e-06 54.3 35 74.3


User provided reference genes

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