Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G16700 Trifolium pratense HOM05D005664 ORTHO05D006509 0.0e+00 1417.5 783 100.0
Medtr3g009540 Medicago truncatula HOM05D005664 ORTHO05D006509 4.4e-280 968.0 810 70.7
Psat5g231360 Pisum sativum HOM05D005664 ORTHO05D006509 4.2e-275 951.4 819 70.6
Ca_14130_v3 Cicer arietinum L. HOM05D005664 ORTHO05D006509 2.2e-239 832.8 794 65.0
Lj3g0022247 Lotus japonicus HOM05D005664 ORTHO05D006509 3.9e-220 768.8 797 63.4
Glyma.04G114300 Glycine max HOM05D005664 ORTHO05D006509 2.7e-205 719.5 804 58.1
Lalb_Chr18g0048701 Lupinus albus HOM05D005664 ORTHO05D006509 1.1e-195 687.6 811 54.0
arahy.Tifrunner.gnm1.ann1.C46LV5 Arachis hypogaea HOM05D005664 ORTHO05D006509 5.9e-192 675.2 804 54.5
Phvul.005G005100 Phaseolus vulgaris HOM05D005664 ORTHO05D006509 5.9e-192 675.2 810 54.3
Glyma.06G321000 Glycine max HOM05D005664 ORTHO05D006509 1.0e-191 674.5 785 57.3
VMungo1080G0452 Vigna mungo HOM05D005664 ORTHO05D006509 2.2e-183 646.7 809 53.4
arahy.Tifrunner.gnm1.ann1.GFW533 Arachis hypogaea HOM05D005664 ORTHO05D006509 3.0e-180 636.3 781 53.6
Lalb_Chr15g0079911 Lupinus albus HOM05D005664 ORTHO05D006509 6.5e-159 565.5 805 49.1
QL08p000429 Quercus lobata HOM05D005664 ORTHO05D006509 7.6e-115 419.1 785 42.2
Haze_09920 Corylus avellana HOM05D005664 ORTHO05D006509 9.6e-102 375.6 779 39.0
Ciclev10007600m.g Citrus clementina HOM05D005664 ORTHO05D006509 2.2e-98 364.4 823 38.0
Cfa016966 Carpinus fangiana HOM05D005664 ORTHO05D006509 1.1e-97 362.1 763 38.4
CiPaw.12G143100 Carya illinoinensis HOM05D005664 ORTHO05D006509 2.1e-96 357.8 720 39.4
Atru.chr2.3903 Acer truncatum HOM05D005664 ORTHO05D006509 5.3e-92 343.2 798 38.0
Prupe.6G035900 Prunus persica HOM05D005664 ORTHO05D006509 1.7e-90 338.2 786 37.8
Dinv19639 Davidia involucrata HOM05D005664 ORTHO05D006509 1.1e-86 325.5 786 37.0
MD11G1047100 Malus domestica HOM05D005664 ORTHO05D006509 8.2e-85 319.3 788 37.9
Dinv40921 Davidia involucrata HOM05D005664 ORTHO05D006509 1.8e-84 318.2 779 37.4
Thecc.07G000900 Theobroma cacao HOM05D005664 ORTHO05D006509 2.6e-83 314.3 812 37.2
Duzib268G0032 Durio zibethinus HOM05D005664 ORTHO05D006509 2.9e-82 310.8 817 36.7
MD03G1043600 Malus domestica HOM05D005664 ORTHO05D006509 1.6e-80 305.1 792 37.8
Duzib170G1037 Durio zibethinus HOM05D005664 ORTHO05D006509 2.1e-80 304.7 807 36.3
TAR627G1206 Trochodendron aralioides HOM05D005664 ORTHO05D006509 3.5e-80 303.9 787 37.0
CSS0015837 Camellia sinensis var. sinensis HOM05D005664 ORTHO05D006509 4.6e-80 303.5 780 37.7
Rhsim06G0235600 Rhododendron simsii HOM05D005664 ORTHO05D006509 5.1e-79 300.1 810 36.5
vmacro11645 Vaccinium macrocarpon HOM05D005664 ORTHO05D006509 1.1e-78 298.9 830 36.9
CSS0022030 Camellia sinensis var. sinensis HOM05D005664 ORTHO05D006509 7.4e-78 296.2 844 35.4
Gohir.D13G131600 Gossypium hirsutum HOM05D005664 ORTHO05D006509 1.3e-77 295.4 811 35.8
FvH4_3g41520 Fragaria vesca HOM05D005664 ORTHO05D006509 2.8e-77 294.3 744 35.5
Gorai.013G147600 Gossypium raimondii HOM05D005664 ORTHO05D006509 4.8e-77 293.5 811 35.6
FAN25G3031 Fragaria x ananassa HOM05D005664 ORTHO05D006509 1.1e-76 292.4 745 35.6
Manes.01G007400 Manihot esculenta HOM05D005664 ORTHO05D006509 1.1e-76 292.4 781 35.7
Hma1.2p1_0193F.1_g084390 Hydrangea macrophylla HOM05D005664 ORTHO05D006509 1.4e-76 292.0 792 35.0
FAN16G2562 Fragaria x ananassa HOM05D005664 ORTHO05D006509 3.1e-76 290.8 744 35.1
Sabra11G0137600 Salix brachista HOM05D005664 ORTHO05D006509 4.5e-75 287.0 787 35.1
FAN11G0133 Fragaria x ananassa HOM05D005664 ORTHO05D006509 7.6e-75 286.2 742 35.4
Manes.01G007300 Manihot esculenta HOM05D005664 ORTHO05D006509 1.9e-73 281.6 806 34.9
Potri.001G472600 Populus trichocarpa HOM05D005664 ORTHO05D006509 1.9e-73 281.6 783 34.7
Actinidia30345 Actinidia chinensis HOM05D005664 ORTHO05D006509 7.2e-73 279.6 826 35.0
RcHm_v2.0_Chr5g0074471 Rosa chinensis HOM05D005664 ORTHO05D006509 1.6e-72 278.5 738 34.4
Cpa.g.sc12.60 Carica papaya HOM05D005664 ORTHO05D006509 7.9e-72 276.2 858 33.4
Cc05_g15770 Coffea canephora HOM05D005664 ORTHO05D006509 1.1e-70 272.3 783 35.0
MELO3C013227.2 Cucumis melo HOM05D005664 ORTHO05D006509 1.5e-70 271.9 774 34.4
COL.COLO4_30921 Corchorus olitorius HOM05D005664 ORTHO05D006509 9.7e-70 269.2 803 34.2
ClCG09G021770 Citrullus lanatus HOM05D005664 ORTHO05D006509 1.8e-68 265.0 776 34.1
Gohir.A13G128200 Gossypium hirsutum HOM05D005664 ORTHO05D006509 1.8e-68 265.0 790 34.8
TAR629G3046 Trochodendron aralioides HOM05D005664 ORTHO05D006509 1.8e-68 265.0 771 34.6
FAN21G3314 Fragaria x ananassa HOM05D005664 ORTHO05D006509 3.1e-68 264.2 724 34.7
Nn1g09430 Nelumbo nucifera HOM05D005664 ORTHO05D006509 3.1e-68 264.2 913 31.3
Potri.011G169200 Populus trichocarpa HOM05D005664 ORTHO05D006509 6.9e-68 263.1 785 33.6
CsaV3_7G021290 Cucumis sativus L. HOM05D005664 ORTHO05D006509 1.0e-66 259.2 778 33.4
Eucgr.F01983 Eucalyptus grandis HOM05D005664 ORTHO05D006509 5.5e-65 253.4 806 33.1
PGSC0003DMG400011270 Solanum tuberosum HOM05D005664 ORTHO05D006509 7.2e-65 253.1 796 32.0
CAN.G492.59 Capsicum annuum HOM05D005664 ORTHO05D006509 1.2e-64 252.3 795 31.4
Sabra16G0320800 Salix brachista HOM05D005664 ORTHO05D006509 1.6e-64 251.9 787 34.1
Sopen10g001670 Solanum pennellii HOM05D005664 ORTHO05D006509 1.6e-64 251.9 815 31.8
CSS0025023 Camellia sinensis var. sinensis HOM05D005664 ORTHO05D006509 2.1e-64 251.5 732 35.0
TWI39G0285 Tripterygium wilfordii HOM05D005664 ORTHO05D006509 4.7e-64 250.4 837 31.4
Solyc10g005700.3 Solanum lycopersicum HOM05D005664 ORTHO05D006509 2.3e-63 248.1 813 31.2
MBI14_g10255_MAGBIO Magnolia biondii HOM05D005664 ORTHO05D006509 1.3e-61 242.3 807 33.5
DCAR_016806 Daucus carota HOM05D005664 ORTHO05D006509 5.3e-60 236.9 772 31.6
Sed0014853 Sechium edule HOM05D005664 ORTHO05D006509 9.1e-60 236.1 803 32.1
Nn7g37452 Nelumbo nucifera HOM05D005664 ORTHO05D006509 1.3e-58 232.3 948 29.7
Aqoxy1G04294 Aquilegia oxysepala HOM05D005664 ORTHO05D006509 1.1e-57 229.2 743 31.5
Oeu015275.1 Olea europaea HOM05D005664 ORTHO05D006509 2.5e-57 228.0 799 31.0
Sed0021044 Sechium edule HOM05D005664 ORTHO05D006509 3.2e-57 227.6 768 32.3
Nitab4.5_0000611g0180 Nicotiana tabacum HOM05D005664 ORTHO05D006509 4.2e-57 227.3 765 30.8
CAN.G8.46 Capsicum annuum HOM05D005664 ORTHO05D006509 1.4e-55 222.2 818 30.9
MSTRG.16129 Avicennia marina HOM05D005664 ORTHO05D006509 1.8e-55 221.9 752 33.0
SalBow8G4453 Salvia bowleyana HOM05D005664 ORTHO05D006509 3.9e-55 220.7 765 31.8
Peaxi162Scf00006g00092 Petunia axillaris HOM05D005664 ORTHO05D006509 3.3e-54 217.6 776 30.7
PGSC0003DMG400002313 Solanum tuberosum HOM05D005664 ORTHO05D006509 5.7e-54 216.9 793 30.5
Solyc12g017230.2 Solanum lycopersicum HOM05D005664 ORTHO05D006509 4.8e-53 213.8 821 30.6
PSO063G4895 Papaver somniferum HOM05D005664 ORTHO05D006509 6.3e-53 213.4 792 29.8
Sopen12g008050 Solanum pennellii HOM05D005664 ORTHO05D006509 8.2e-53 213.0 812 30.4
Nitab4.5_0001622g0140 Nicotiana tabacum HOM05D005664 ORTHO05D006509 2.4e-52 211.5 759 29.9
Oeu052022.1 Olea europaea HOM05D005664 ORTHO05D006509 7.0e-52 209.9 793 30.8
PSO782G2174 Papaver somniferum HOM05D005664 ORTHO05D006509 7.0e-52 209.9 792 29.7
SGA_v2.0_scaffold186G40232 Striga asiatica HOM05D005664 ORTHO05D006509 3.8e-50 204.1 744 32.9
THA.LOC104813471 Tarenaya hassleriana HOM05D005664 ORTHO05D006509 2.8e-45 188.0 826 30.4
GSVIVG01014850001 Vitis vinifera HOM05D005664 ORTHO05D006509 1.5e-41 175.6 173 54.3
Hund01929 Selenicereus undatus HOM05D005664 ORTHO05D006509 9.4e-41 172.9 738 27.1
unitig_37.g12212 Utricularia gibba HOM05D005664 ORTHO05D006509 1.2e-40 172.6 803 29.3
THA.LOC104813465 Tarenaya hassleriana HOM05D005664 ORTHO05D006509 3.6e-40 171.0 830 30.1
Hma1.2p1_0321F.1_g124370 Hydrangea macrophylla HOM05D005664 ORTHO05D006509 1.0e-39 169.5 780 29.4
AUR62015929 Chenopodium quinoa HOM05D005664 ORTHO05D006509 5.7e-38 163.7 777 27.8
Migut.M01578 Erythranthe guttata HOM05D005664 ORTHO05D006509 2.8e-37 161.4 793 28.9
Lsat_1_v5_gn_7_115861 Lactuca sativa HOM05D005664 ORTHO05D006509 3.7e-37 161.0 737 28.2
Hund01927 Selenicereus undatus HOM05D005664 ORTHO05D006509 3.7e-37 161.0 723 26.8
EL10Ac4g07635 Beta vulgaris HOM05D005664 ORTHO05D006509 1.1e-36 159.5 774 27.8
Oeu062669.1 Olea europaea HOM05D005664 ORTHO05D006509 5.4e-36 157.1 714 28.7
AUR62040680 Chenopodium quinoa HOM05D005664 ORTHO05D006509 9.1e-36 156.4 770 27.7
Ah.06g181030 Amaranthus hybridus HOM05D000037 ORTHO05D006509 3.5e-35 154.5 296 36.1
Lj1A901G38 Lonicera japonica HOM05D005664 ORTHO05D006509 1.0e-34 152.9 123 58.5
Ah.04g166380 Amaranthus hybridus HOM05D005664 ORTHO05D006509 1.4e-31 142.5 473 30.0
Psat6g196680 Pisum sativum HOM05D005664 ORTHO05D006509 1.4e-31 142.5 117 64.1
Carub.0007s1448 Capsella rubella HOM05D005664 ORTHO05D006509 3.0e-31 141.4 808 30.1
Sp7g24360 Schrenkiella parvula HOM05D005664 ORTHO05D006509 5.2e-31 140.6 806 27.3
CDE11G0421 Ceratophyllum demersum HOM05D005664 ORTHO05D006509 6.8e-31 140.2 812 26.7
CANSAT11G1251 Cannabis sativa HOM05D005664 ORTHO05D006509 1.5e-30 139.0 763 27.1
A03p56710 Brassica napus HOM05D005664 ORTHO05D006509 3.4e-30 137.9 761 27.5
BraA03t14741Z Brassica rapa HOM05D005664 ORTHO05D006509 3.4e-30 137.9 761 27.5
HanXRQChr17g0546881 Helianthus annuus HOM05D005664 ORTHO05D006509 5.7e-30 137.1 744 28.1
AL7G26500 Arabidopsis lyrata HOM05D005664 ORTHO05D006509 9.8e-30 136.3 769 28.7
Aa31LG5G11790 Aethionema arabicum HOM05D005664 ORTHO05D006509 1.3e-29 136.0 734 28.1
Sc03g0011800 Simmondsia chinensis HOM05D005664 ORTHO05D006509 1.7e-29 135.6 511 30.3
AT4G26450 Arabidopsis thaliana HOM05D005664 ORTHO05D006509 4.9e-29 134.0 796 27.5
ECA236G2587 Erigeron canadensis HOM05D005664 ORTHO05D006509 1.1e-28 132.9 439 29.8
Thhalv10024531m.g Eutrema salsugineum HOM05D005664 ORTHO05D006509 2.0e-27 128.6 764 27.9
C01p22360 Brassica napus HOM05D005664 ORTHO05D006509 5.9e-27 127.1 808 28.5
C07p54910 Brassica napus HOM05D005664 ORTHO05D006509 1.1e-25 122.9 759 26.0
BolC7t45979H Brassica oleracea HOM05D005664 ORTHO05D006509 1.1e-25 122.9 759 26.0
BcaC09g50709 Brassica carinata HOM05D005664 ORTHO05D006509 1.9e-25 122.1 755 27.4
A01p17690 Brassica napus HOM05D005664 ORTHO05D006509 3.3e-25 121.3 811 29.0
CARHR234010 Cardamine hirsuta HOM05D005664 ORTHO05D006509 3.3e-25 121.3 819 27.2
BraA01t01725Z Brassica rapa HOM05D005664 ORTHO05D006509 1.6e-24 119.0 811 29.0
Migut.H01706 Erythranthe guttata HOM05D005664 ORTHO05D006509 6.8e-23 113.6 415 30.6
BcaC06g32747 Brassica carinata HOM05D005664 ORTHO05D006509 2.6e-22 111.7 775 27.4
BolC1t02167H Brassica oleracea HOM05D005664 ORTHO05D006509 5.8e-22 110.5 808 28.6
CDE05G2921 Ceratophyllum demersum HOM05D005664 ORTHO05D006509 5.8e-22 110.5 811 26.1
HPP92_019365 Vanilla planifolia HOM05D005664 ORTHO05D006509 2.8e-16 91.7 753 25.1
Os04g0431000 Oryza sativa ssp. japonica HOM05D019841 ORTHO05D006509 1.9e-12 79.0 197 31.0
Zm00001eb422560 Zea mays HOM05D019841 ORTHO05D006509 3.6e-08 64.7 768 22.8
Lj1A901T36 Lonicera japonica HOM05D005664 ORTHO05D006509 2.0e-06 58.9 276 32.2
MSTRG.7045 Avicennia marina HOM05D005664 ORTHO05D006509 2.6e-06 58.5 88 37.5
Os02g0550000 Oryza sativa ssp. japonica HOM05D019841 ORTHO05D037008 4.4e-06 57.8 796 23.6


User provided reference genes

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