Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G16683 Trifolium pratense HOM05D003796 ORTHO05D004486 7.2e-128 460.7 248 100.0
Medtr3g009150 Medicago truncatula HOM05D003796 ORTHO05D004486 1.0e-86 323.9 225 76.4
Glyma.04G117800 Glycine max HOM05D003796 ORTHO05D004486 4.4e-69 265.4 225 65.8
VMungo1080G1154 Vigna mungo HOM05D003796 ORTHO05D004486 9.5e-64 247.7 225 61.8
Lj3g0024133 Lotus japonicus HOM05D005948 ORTHO05D007689 2.4e-62 243.0 223 62.8
arahy.Tifrunner.gnm1.ann1.43ZKU2 Arachis hypogaea HOM05D003796 ORTHO05D004486 1.8e-54 216.9 223 56.1
arahy.Tifrunner.gnm1.ann1.T3U7B8 Arachis hypogaea HOM05D003796 ORTHO05D004486 5.8e-53 211.8 252 51.2
Lalb_Chr18g0048811 Lupinus albus HOM05D003796 ORTHO05D004486 7.3e-48 194.9 176 62.5
Psat5g230640 Pisum sativum HOM05D003796 ORTHO05D004486 1.2e-45 187.6 136 72.1
Thecc.04G167900 Theobroma cacao HOM05D003796 ORTHO05D004486 1.3e-44 184.1 227 50.2
Dinv01938 Davidia involucrata HOM05D003796 ORTHO05D004486 1.9e-43 180.3 227 47.6
Manes.11G130200 Manihot esculenta HOM05D003796 ORTHO05D004486 1.9e-43 180.3 229 46.3
Prupe.1G206000 Prunus persica HOM05D003796 ORTHO05D004486 7.1e-43 178.3 226 48.7
TWI63G1493 Tripterygium wilfordii HOM05D003796 ORTHO05D004486 7.1e-43 178.3 220 49.1
Hma1.2p1_0150F.1_g066720 Hydrangea macrophylla HOM05D003796 ORTHO05D004486 1.2e-42 177.6 224 47.3
GSVIVG01038134001 Vitis vinifera HOM05D003796 ORTHO05D004486 3.5e-42 176.0 217 49.8
Cpa.g.sc9.356 Carica papaya HOM05D003796 ORTHO05D004486 7.9e-42 174.9 227 48.5
Gohir.A02G091201 Gossypium hirsutum HOM05D003796 ORTHO05D004486 7.9e-42 174.9 225 47.1
Gohir.A02G091300 Gossypium hirsutum HOM05D003796 ORTHO05D004486 7.9e-42 174.9 225 47.1
Cfa015262 Carpinus fangiana HOM05D003796 ORTHO05D004486 1.8e-41 173.7 194 53.6
Duzib268G0739 Durio zibethinus HOM05D003796 ORTHO05D004486 1.8e-41 173.7 227 48.0
Ciclev10022254m.g Citrus clementina HOM05D003796 ORTHO05D004486 2.3e-41 173.3 228 46.5
FAN11G2235 Fragaria x ananassa HOM05D003796 ORTHO05D004486 3.0e-41 172.9 251 46.2
CANSAT80G2480 Cannabis sativa HOM05D003796 ORTHO05D004486 3.9e-41 172.6 241 45.6
arahy.Tifrunner.gnm1.ann1.PV0LGU Arachis hypogaea HOM05D003796 ORTHO05D004486 5.1e-41 172.2 165 58.8
Nn1g09689 Nelumbo nucifera HOM05D003796 ORTHO05D004486 6.7e-41 171.8 228 46.1
RcHm_v2.0_Chr5g0044351 Rosa chinensis HOM05D003796 ORTHO05D004486 6.7e-41 171.8 168 59.5
CiPaw.02G100800 Carya illinoinensis HOM05D003796 ORTHO05D004486 8.7e-41 171.4 236 47.0
MD04G1048700 Malus domestica HOM05D003796 ORTHO05D004486 1.5e-40 170.6 221 48.9
Potri.013G125500 Populus trichocarpa HOM05D003796 ORTHO05D004486 1.5e-40 170.6 226 47.3
QL10p053319 Quercus lobata HOM05D003796 ORTHO05D004486 1.9e-40 170.2 206 50.0
Actinidia28984 Actinidia chinensis HOM05D003796 ORTHO05D004486 2.5e-40 169.9 229 45.0
CANSAT80G1979 Cannabis sativa HOM05D003796 ORTHO05D004486 3.3e-40 169.5 242 45.0
Atru.chr4.1394 Acer truncatum HOM05D003796 ORTHO05D004486 5.6e-40 168.7 223 46.6
QL10p054541 Quercus lobata HOM05D003796 ORTHO05D004486 5.6e-40 168.7 166 57.2
CsaV3_6G007000 Cucumis sativus L. HOM05D003796 ORTHO05D004486 1.3e-39 167.5 227 44.9
TAR362G0647 Trochodendron aralioides HOM05D003796 ORTHO05D004486 4.8e-39 165.6 243 42.4
PGR042G1269 Punica granatum HOM05D003796 ORTHO05D004486 6.2e-39 165.2 231 45.9
Dinv02937 Davidia involucrata HOM05D003796 ORTHO05D004486 1.4e-38 164.1 162 54.3
Sabra13G0104300 Salix brachista HOM05D003796 ORTHO05D004486 1.4e-38 164.1 226 46.0
MELO3C022428.2 Cucumis melo HOM05D003796 ORTHO05D004486 1.8e-38 163.7 228 44.3
Cc06_g21580 Coffea canephora HOM05D003796 ORTHO05D004486 1.2e-37 161.0 211 46.0
Aa31LG5G6120 Aethionema arabicum HOM05D004685 ORTHO05D005412 4.5e-37 159.1 157 52.9
FAN25G0936 Fragaria x ananassa HOM05D003796 ORTHO05D004486 4.5e-37 159.1 198 51.0
Gorai.005G124300 Gossypium raimondii HOM05D003796 ORTHO05D004486 1.3e-36 157.5 225 44.9
Rhsim02G0083600 Rhododendron simsii HOM05D003796 ORTHO05D004486 6.4e-36 155.2 197 47.7
ClCG06G001070 Citrullus lanatus HOM05D003796 ORTHO05D004486 2.5e-35 153.3 186 51.6
Eucgr.A00012 Eucalyptus grandis HOM05D003796 ORTHO05D004486 4.2e-35 152.5 223 43.9
AL4G25590 Arabidopsis lyrata HOM05D003796 ORTHO05D004486 1.2e-34 151.0 178 46.1
ATR0075G045 Amborella trichopoda HOM05D003796 ORTHO05D004486 2.1e-34 150.2 161 52.2
DCAR_005444 Daucus carota HOM05D003796 ORTHO05D004486 2.1e-34 150.2 195 46.7
Haze_01372 Corylus avellana HOM05D003796 ORTHO05D004486 3.5e-34 149.4 290 38.6
Carub.0004s1187 Capsella rubella HOM05D003796 ORTHO05D004486 7.9e-34 148.3 186 46.2
MSTRG.24566 Avicennia marina HOM05D003796 ORTHO05D004486 1.0e-33 147.9 172 49.4
BraA04t17867Z Brassica rapa HOM05D003796 ORTHO05D004486 1.3e-33 147.5 163 50.3
CARHR124190 Cardamine hirsuta HOM05D003796 ORTHO05D004486 1.8e-33 147.1 179 47.5
Phvul.005G006900 Phaseolus vulgaris HOM05D003796 ORTHO05D004486 3.9e-33 146.0 127 59.8
AT2G30695 Arabidopsis thaliana HOM05D003796 ORTHO05D004486 6.7e-33 145.2 163 49.7
PSO210G6849 Papaver somniferum HOM05D003796 ORTHO05D004486 1.1e-32 144.4 194 44.8
CSS0047221 Camellia sinensis var. sinensis HOM05D003796 ORTHO05D004486 1.9e-32 143.7 147 53.7
Sp4g13210 Schrenkiella parvula HOM05D003796 ORTHO05D004486 1.9e-32 143.7 163 49.1
THA.LOC104800810 Tarenaya hassleriana HOM05D003796 ORTHO05D004486 3.3e-32 142.9 150 53.3
Aqoxy5G00021 Aquilegia oxysepala HOM05D003796 ORTHO05D004486 5.6e-32 142.1 154 51.3
A04p23400 Brassica napus HOM05D003796 ORTHO05D004486 7.4e-32 141.7 163 49.7
Thhalv10017862m.g Eutrema salsugineum HOM05D003796 ORTHO05D004486 7.4e-32 141.7 165 48.5
FAN21G0866 Fragaria x ananassa HOM05D003796 ORTHO05D004486 2.8e-31 139.8 228 44.7
Peaxi162Scf00568g00059 Petunia axillaris HOM05D003796 ORTHO05D011410 1.1e-30 137.9 167 46.1
BolC4t27478H Brassica oleracea HOM05D003796 ORTHO05D004486 4.0e-30 136.0 163 47.2
C04p59700 Brassica napus HOM05D003796 ORTHO05D004486 5.3e-30 135.6 163 47.2
Nitab4.5_0000504g0010 Nicotiana tabacum HOM05D003796 ORTHO05D004486 1.2e-29 134.4 186 42.5
HPP92_001266 Vanilla planifolia HOM05D003796 ORTHO05D004486 4.5e-29 132.5 219 36.5
PSO832G2763 Papaver somniferum HOM05D003796 ORTHO05D004486 1.0e-28 131.3 157 47.8
HPP92_001250 Vanilla planifolia HOM05D003796 ORTHO05D004486 2.2e-28 130.2 155 45.2
CDE09G0312 Ceratophyllum demersum HOM05D003796 ORTHO05D004486 1.4e-27 127.5 185 41.6
MBI08_g25561_MAGBIO Magnolia biondii HOM05D003796 ORTHO05D004486 6.1e-26 122.1 228 37.3
Oeu020812.1 Olea europaea HOM05D003796 ORTHO05D004486 2.3e-25 120.2 110 57.3
Zm00001eb102770 Zea mays HOM05D003796 ORTHO05D004486 3.0e-25 119.8 154 45.5
CDE04G0900 Ceratophyllum demersum HOM05D003796 ORTHO05D004486 3.7e-23 112.8 171 37.4
Os09g0515400 Oryza sativa ssp. japonica HOM05D003796 ORTHO05D004486 8.2e-23 111.7 218 35.8
Phvul.005G006800 Phaseolus vulgaris HOM05D003796 ORTHO05D004486 5.3e-22 109.0 73 79.5
Zm00001eb318420 Zea mays HOM05D003796 ORTHO05D004486 5.3e-22 109.0 161 42.9
Nn7g37675 Nelumbo nucifera HOM05D003796 ORTHO05D004486 1.0e-20 104.8 181 35.4
Cpa.g.sc9.357 Carica papaya HOM05D003796 ORTHO05D004486 5.0e-20 102.4 171 37.4
CSS0030237 Camellia sinensis var. sinensis HOM05D003796 ORTHO05D004486 6.5e-20 102.1 232 34.1
MELO3C022427.2 Cucumis melo HOM05D003796 ORTHO05D004486 1.9e-19 100.5 194 32.0
Migut.N03072 Erythranthe guttata HOM05D003796 ORTHO05D004486 2.5e-19 100.1 169 35.5
Sed0014142 Sechium edule HOM05D003796 ORTHO05D004486 5.5e-19 99.0 171 33.3
SEGI_15351 Sequoiadendron giganteum HOM05D003796 ORTHO05D004486 5.5e-19 99.0 144 35.4
CANSAT35G0237 Cannabis sativa HOM05D003796 ORTHO05D004486 9.4e-19 98.2 165 34.5
Hma1.2p1_0150F.1_g066730 Hydrangea macrophylla HOM05D003796 ORTHO05D004486 9.4e-19 98.2 209 33.5
MD08G1249800 Malus domestica HOM05D003796 ORTHO05D004486 9.4e-19 98.2 142 38.0
Os01g0894700 Oryza sativa ssp. japonica HOM05D003796 ORTHO05D004486 9.4e-19 98.2 188 34.6
PGR042G0542 Punica granatum HOM05D003796 ORTHO05D004486 9.4e-19 98.2 170 35.3
ATR0075G004 Amborella trichopoda HOM05D003796 ORTHO05D004486 1.2e-18 97.8 166 33.7
Ciclev10021832m.g Citrus clementina HOM05D003796 ORTHO05D004486 2.1e-18 97.1 182 33.0
Lalb_Chr19g0138481 Lupinus albus HOM05D003796 ORTHO05D004486 2.1e-18 97.1 170 35.3
AagrBONN_evm.TU.Sc2ySwM_117.3751 Anthoceros agrestis HOM05D003796 ORTHO05D004486 2.7e-18 96.7 189 33.3
CiPaw.01G171300 Carya illinoinensis HOM05D003796 ORTHO05D004486 2.7e-18 96.7 170 32.9
MSTRG.22023 Avicennia marina HOM05D003796 ORTHO05D004486 3.6e-18 96.3 171 35.1
Duzib268G1213 Durio zibethinus HOM05D003796 ORTHO05D004486 3.6e-18 96.3 206 32.5
Potri.013G125600 Populus trichocarpa HOM05D003796 ORTHO05D004486 3.6e-18 96.3 171 33.9
Gohir.D05G328000 Gossypium hirsutum HOM05D003796 ORTHO05D004486 4.6e-18 95.9 208 32.7
Pp3c14_20300 Physcomitrium patens HOM05D003796 ORTHO05D004486 4.6e-18 95.9 162 34.0
RcHm_v2.0_Chr4g0406061 Rosa chinensis HOM05D003796 ORTHO05D004486 6.1e-18 95.5 165 33.3
Zm00001eb144880 Zea mays HOM05D003796 ORTHO05D004486 7.9e-18 95.1 194 34.0
Sopen06g031310 Solanum pennellii HOM05D003796 ORTHO05D004486 1.0e-17 94.7 176 34.7
CsaV3_6G007010 Cucumis sativus L. HOM05D003796 ORTHO05D004486 1.8e-17 94.0 171 31.0
Gohir.A05G327600 Gossypium hirsutum HOM05D003796 ORTHO05D004486 1.8e-17 94.0 201 31.8
TWI63G0811 Tripterygium wilfordii HOM05D003796 ORTHO05D004486 3.0e-17 93.2 167 34.7
Dinv33197 Davidia involucrata HOM05D003796 ORTHO05D004486 3.9e-17 92.8 164 34.8
MBI08_g25562_MAGBIO Magnolia biondii HOM05D003796 ORTHO05D004486 3.9e-17 92.8 171 33.3
Prupe.1G586900 Prunus persica HOM05D003796 ORTHO05D004486 3.9e-17 92.8 142 34.5
Glyma.12G048900 Glycine max HOM05D003796 ORTHO05D004486 5.1e-17 92.4 168 33.9
Gorai.009G351700 Gossypium raimondii HOM05D003796 ORTHO05D004486 5.1e-17 92.4 208 33.2
HanXRQChr13g0418501 Helianthus annuus HOM05D003796 ORTHO05D004486 5.1e-17 92.4 143 35.0
Solyc06g074900.3 Solanum lycopersicum HOM05D003796 ORTHO05D004486 5.1e-17 92.4 187 33.2
VMungo1127G1870 Vigna mungo HOM05D003796 ORTHO05D004486 5.1e-17 92.4 168 33.9
Actinidia28983 Actinidia chinensis HOM05D003796 ORTHO05D004486 6.7e-17 92.0 169 36.1
PGSC0003DMG402007138 Solanum tuberosum HOM05D003796 ORTHO05D004486 6.7e-17 92.0 143 35.0
Aqoxy2G01069 Aquilegia oxysepala HOM05D003796 ORTHO05D004486 1.1e-16 91.3 229 27.5
ECA240G0037 Erigeron canadensis HOM05D003796 ORTHO05D004486 1.1e-16 91.3 200 30.5
CAN.G1001.53 Capsicum annuum HOM05D003796 ORTHO05D004486 1.5e-16 90.9 145 35.2
Manes.11G130100 Manihot esculenta HOM05D003796 ORTHO05D004486 4.3e-16 89.4 171 34.5
QL10p054554 Quercus lobata HOM05D003796 ORTHO05D004486 4.3e-16 89.4 205 28.8
Sc19g0002760 Simmondsia chinensis HOM05D003796 ORTHO05D004486 4.3e-16 89.4 141 36.9
CBR_g31497 Chara braunii HOM05D003796 ORTHO05D004486 5.7e-16 89.0 136 38.2
CAN.G1432.20 Capsicum annuum HOM05D003796 ORTHO05D004486 9.7e-16 88.2 143 33.6
Lj3g0002298 Lotus japonicus HOM05D003796 ORTHO05D004486 9.7e-16 88.2 168 33.3
GSVIVG01038135001 Vitis vinifera HOM05D003796 ORTHO05D004486 9.7e-16 88.2 171 33.9
Solyc06g074890.1 Solanum lycopersicum HOM05D003796 ORTHO05D004486 1.3e-15 87.8 160 32.5
Sopen06g031300 Solanum pennellii HOM05D003796 ORTHO05D004486 1.7e-15 87.4 160 32.5
PGSC0003DMG401007138 Solanum tuberosum HOM05D003796 ORTHO05D004486 1.7e-15 87.4 189 31.2
Atru.chr4.1395 Acer truncatum HOM05D003796 ORTHO05D004486 2.2e-15 87.0 159 35.2
Phvul.011G051000 Phaseolus vulgaris HOM05D003796 ORTHO05D004486 2.2e-15 87.0 168 32.1
PSO832G1541 Papaver somniferum HOM05D003796 ORTHO05D004486 2.8e-15 86.7 171 29.8
arahy.Tifrunner.gnm1.ann1.P7R60W Arachis hypogaea HOM05D003796 ORTHO05D004486 3.7e-15 86.3 219 30.6
Medtr4g068280 Medicago truncatula HOM05D003796 ORTHO05D004486 3.7e-15 86.3 214 30.4
FvH4_3g24770 Fragaria vesca HOM05D003796 ORTHO05D004486 6.3e-15 85.5 155 41.3
Lsat_1_v5_gn_3_110880 Lactuca sativa HOM05D003796 ORTHO05D004486 1.1e-14 84.7 222 29.3
TPR.G10226 Trifolium pratense HOM05D003796 ORTHO05D004486 1.4e-14 84.3 168 31.5
Gohir.D02G109300 Gossypium hirsutum HOM05D003796 ORTHO05D004486 1.8e-14 84.0 128 41.4
PSO210G4043 Papaver somniferum HOM05D003796 ORTHO05D004486 2.4e-14 83.6 211 28.9
EL10Ac3g06067 Beta vulgaris HOM05D003796 ORTHO05D004486 4.1e-14 82.8 202 31.2
TAR362G0252 Trochodendron aralioides HOM05D003796 ORTHO05D004486 4.1e-14 82.8 171 30.4
Psat7g207840 Pisum sativum HOM05D003796 ORTHO05D004486 1.2e-13 81.3 125 36.0
SGA_v2.0_scaffold25G10998 Striga asiatica HOM05D003796 ORTHO05D004486 1.2e-13 81.3 204 29.9
arahy.Tifrunner.gnm1.ann1.I4880T Arachis hypogaea HOM05D003796 ORTHO05D004486 1.0e-12 78.2 141 34.0
CAN.G1001.52 Capsicum annuum HOM05D003796 ORTHO05D004486 2.9e-12 76.6 111 36.9
Eucgr.A00010 Eucalyptus grandis HOM05D003796 ORTHO05D004486 3.8e-12 76.3 78 46.2
AUR62002376 Chenopodium quinoa HOM05D003796 ORTHO05D004486 1.1e-11 74.7 162 32.7
Ca_20812_v3 Cicer arietinum L. HOM05D003796 ORTHO05D004486 1.4e-11 74.3 168 32.1
Nitab4.5_0003575g0020 Nicotiana tabacum HOM05D003796 ORTHO05D004486 1.9e-11 73.9 92 44.6
AUR62023807 Chenopodium quinoa HOM05D003796 ORTHO05D004486 3.2e-11 73.2 108 37.0
Eucgr.G00294 Eucalyptus grandis HOM05D003796 ORTHO05D004486 5.5e-11 72.4 129 40.3
Eucgr.A00011 Eucalyptus grandis HOM05D003796 ORTHO05D004486 1.6e-10 70.9 129 39.5
ClCG01G012270 Citrullus lanatus HOM05D003796 ORTHO05D022376 3.6e-10 69.7 41 78.0
Hund03191 Selenicereus undatus HOM05D003796 ORTHO05D004486 4.7e-10 69.3 161 29.2
Cc06_g21590 Coffea canephora HOM05D003796 ORTHO05D004486 7.9e-10 68.6 134 32.8
arahy.Tifrunner.gnm1.ann1.14GY92 Arachis hypogaea HOM05D003796 ORTHO05D004486 3.9e-09 66.2 60 60.0
FvH4_4g10500 Fragaria vesca HOM05D003796 ORTHO05D004486 5.1e-09 65.9 156 28.8
Sed0002366 Sechium edule HOM05D003796 ORTHO05D004486 5.1e-09 65.9 68 52.9
FAN12G1593 Fragaria x ananassa HOM05D003796 ORTHO05D004486 6.3e-07 58.9 199 25.6
Nitab4.5_0007977g0020 Nicotiana tabacum HOM05D003796 ORTHO05D004486 1.1e-06 58.2 142 28.9
Peaxi162Scf00568g00527 Petunia axillaris HOM05D003796 ORTHO05D004486 1.1e-06 58.2 142 28.9
Ah.13g073570 Amaranthus hybridus HOM05D003796 ORTHO05D004486 7.0e-06 55.5 187 27.3


User provided reference genes

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