Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G16658 Trifolium pratense HOM05D005068 ORTHO05D007561 0.0e+00 1697.2 1073 100.0
Psat2g016360 Pisum sativum HOM05D005068 ORTHO05D007561 0.0e+00 1384.0 1059 78.2
Medtr5g019130 Medicago truncatula HOM05D005068 ORTHO05D007561 0.0e+00 1333.2 1058 75.3
Medtr4g119670 Medicago truncatula HOM05D005068 ORTHO05D007561 0.0e+00 1332.0 1045 77.1
Ca_23422_v3 Cicer arietinum L. HOM05D005068 ORTHO05D007561 0.0e+00 1320.1 1064 77.0
Glyma.07G043700 Glycine max HOM05D005068 ORTHO05D007561 0.0e+00 1293.5 1058 72.0
Phvul.010G125200 Phaseolus vulgaris HOM05D005068 ORTHO05D007561 0.0e+00 1270.8 1061 71.7
VMungo0331G1431 Vigna mungo HOM05D005068 ORTHO05D007561 0.0e+00 1261.5 1054 72.1
arahy.Tifrunner.gnm1.ann1.JS5XG8 Arachis hypogaea HOM05D005068 ORTHO05D007561 0.0e+00 1260.0 1073 69.6
Lj3g0023295 Lotus japonicus HOM05D005068 ORTHO05D007561 0.0e+00 1224.2 1059 68.7
Lalb_Chr04g0253821 Lupinus albus HOM05D005068 ORTHO05D007561 0.0e+00 1220.7 960 71.6
Ca_30848_v3 Cicer arietinum L. HOM05D005068 ORTHO05D007561 0.0e+00 1208.7 889 78.9
Glyma.16G012100 Glycine max HOM05D005068 ORTHO05D007561 0.0e+00 1200.3 1053 68.4
arahy.Tifrunner.gnm1.ann1.X03KN2 Arachis hypogaea HOM05D005068 ORTHO05D007561 0.0e+00 1139.8 1064 64.9
MD17G1151100 Malus domestica HOM05D005068 ORTHO05D007561 0.0e+00 1119.0 1071 64.2
Manes.09G018800 Manihot esculenta HOM05D005068 ORTHO05D007561 0.0e+00 1116.7 1081 60.5
CiPaw.01G213900 Carya illinoinensis HOM05D005068 ORTHO05D007561 0.0e+00 1115.1 1083 61.4
MD09G1175700 Malus domestica HOM05D005068 ORTHO05D007561 0.0e+00 1111.3 1096 60.9
Sed0017975 Sechium edule HOM05D005068 ORTHO05D007561 0.0e+00 1105.5 1060 60.9
CSS0009347 Camellia sinensis var. sinensis HOM05D005068 ORTHO05D007561 0.0e+00 1097.4 1065 60.4
Sed0003275 Sechium edule HOM05D005068 ORTHO05D007561 0.0e+00 1093.2 1061 59.3
CSS0048439 Camellia sinensis var. sinensis HOM05D005068 ORTHO05D007561 0.0e+00 1092.4 1065 60.2
Potri.001G164100 Populus trichocarpa HOM05D005068 ORTHO05D007561 0.0e+00 1078.9 1070 61.4
QL05p001958 Quercus lobata HOM05D005068 ORTHO05D007561 0.0e+00 1078.5 1098 60.2
Prupe.3G034700 Prunus persica HOM05D005068 ORTHO05D007561 3.2e-310 1068.5 1064 64.1
MELO3C024322.2 Cucumis melo HOM05D005068 ORTHO05D007561 7.3e-310 1067.4 1067 61.7
TAR628G1511 Trochodendron aralioides HOM05D005068 ORTHO05D007561 2.1e-309 1065.8 1053 59.8
PGR102G2847 Punica granatum HOM05D005068 ORTHO05D007561 5.2e-308 1061.2 1054 61.9
CsaV3_7G034120 Cucumis sativus L. HOM05D005068 ORTHO05D007561 2.6e-307 1058.9 1066 60.4
Cfa003490 Carpinus fangiana HOM05D005068 ORTHO05D007561 6.4e-306 1054.3 1084 61.6
GSVIVG01016696001 Vitis vinifera HOM05D005068 ORTHO05D007561 2.4e-305 1052.4 1068 58.7
TWI59G1220 Tripterygium wilfordii HOM05D005068 ORTHO05D007561 1.9e-302 1042.7 1095 62.4
FAN14G5424 Fragaria x ananassa HOM05D005068 ORTHO05D007561 1.2e-301 1040.0 1063 61.0
RcHm_v2.0_Chr2g0147011 Rosa chinensis HOM05D005068 ORTHO05D007561 1.6e-301 1039.6 1047 60.2
Hund18654 Selenicereus undatus HOM05D005068 ORTHO05D007561 2.1e-301 1039.3 1076 61.1
FAN05G3041 Fragaria x ananassa HOM05D005068 ORTHO05D007561 4.0e-300 1035.0 1053 60.8
Atru.chr1.4129 Acer truncatum HOM05D005068 ORTHO05D007561 2.6e-299 1032.3 1070 61.0
CANSAT01G1537 Cannabis sativa HOM05D005068 ORTHO05D007561 9.8e-299 1030.4 1061 60.7
FvH4_6g35460 Fragaria vesca HOM05D005068 ORTHO05D007561 3.7e-298 1028.5 1060 60.8
Aqoxy1G00349 Aquilegia oxysepala HOM05D005068 ORTHO05D007561 4.9e-298 1028.1 1031 60.0
Gorai.011G056800 Gossypium raimondii HOM05D005068 ORTHO05D007561 1.1e-297 1026.9 1081 59.3
Gohir.D10G053200 Gossypium hirsutum HOM05D005068 ORTHO05D007561 3.2e-297 1025.4 1081 59.3
Sabra01G0128700 Salix brachista HOM05D005068 ORTHO05D007561 1.2e-296 1023.5 1069 61.8
EL10Ac7g16459 Beta vulgaris HOM05D005068 ORTHO05D007561 6.0e-296 1021.1 1084 62.4
Eucgr.J02606 Eucalyptus grandis HOM05D005068 ORTHO05D007561 1.1e-292 1010.4 1068 59.0
Lsat_1_v5_gn_5_136720 Lactuca sativa HOM05D005068 ORTHO05D007561 2.3e-292 1009.2 1027 60.8
PSO384G5027 Papaver somniferum HOM05D005068 ORTHO05D007561 4.0e-292 1008.4 1110 57.1
HanXRQChr12g0360151 Helianthus annuus HOM05D005068 ORTHO05D007561 2.0e-291 1006.1 1032 60.3
Haze_16103 Corylus avellana HOM05D005068 ORTHO05D007561 2.6e-291 1005.7 1221 55.5
ECA234G0903 Erigeron canadensis HOM05D005068 ORTHO05D007561 4.4e-291 1005.0 1023 58.9
Solyc03g123530.4 Solanum lycopersicum HOM05D005068 ORTHO05D007561 1.1e-289 1000.3 1069 57.3
CAN.G790.67 Capsicum annuum HOM05D005068 ORTHO05D007561 7.1e-289 997.7 1051 57.7
ClCG09G001250 Citrullus lanatus HOM05D005068 ORTHO05D007561 3.5e-288 995.3 1057 58.3
PSO339G5314 Papaver somniferum HOM05D005068 ORTHO05D007561 2.5e-286 989.2 1100 57.9
AUR62009935 Chenopodium quinoa HOM05D005068 ORTHO05D007561 3.3e-286 988.8 1064 56.4
MSTRG.22527 Avicennia marina HOM05D005068 ORTHO05D007561 2.1e-285 986.1 1036 59.6
Gohir.A10G051500 Gossypium hirsutum HOM05D005068 ORTHO05D007561 2.1e-285 986.1 1079 56.8
Oeu000383.1 Olea europaea HOM05D005068 ORTHO05D007561 2.1e-285 986.1 1059 55.1
AUR62001432 Chenopodium quinoa HOM05D005068 ORTHO05D007561 4.7e-285 984.9 1074 54.0
FAN09G4827 Fragaria x ananassa HOM05D005068 ORTHO05D007561 4.4e-283 978.4 1061 59.9
Peaxi162Scf00038g02247 Petunia axillaris HOM05D005068 ORTHO05D007561 1.9e-281 973.0 1048 55.5
Cc04_g00890 Coffea canephora HOM05D005068 ORTHO05D007561 9.2e-281 970.7 935 58.8
Ciclev10024779m.g Citrus clementina HOM05D005068 ORTHO05D007561 2.1e-280 969.5 1097 54.7
Sopen03g041300 Solanum pennellii HOM05D005068 ORTHO05D007561 4.6e-280 968.4 1082 57.4
Nitab4.5_0009947g0020 Nicotiana tabacum HOM05D005068 ORTHO05D007561 7.8e-280 967.6 938 58.7
Nitab4.5_0003981g0040 Nicotiana tabacum HOM05D005068 ORTHO05D007561 1.7e-279 966.5 1066 55.2
AT1G72440 Arabidopsis thaliana HOM05D005068 ORTHO05D007561 3.0e-279 965.7 987 57.4
Cpa.g.sc25.173 Carica papaya HOM05D005068 ORTHO05D007561 3.0e-279 965.7 1116 53.0
SalBow6G5915 Salvia bowleyana HOM05D005068 ORTHO05D007561 2.1e-277 959.5 1081 57.6
THA.LOC104808063 Tarenaya hassleriana HOM05D005068 ORTHO05D007561 6.8e-276 954.5 1017 57.6
Peaxi162Scf00535g00325 Petunia axillaris HOM05D005068 ORTHO05D007561 1.2e-275 953.7 1057 54.5
AL2G32110 Arabidopsis lyrata HOM05D005068 ORTHO05D007561 2.0e-275 953.0 993 57.0
Thecc.06G127400 Theobroma cacao HOM05D005068 ORTHO05D007561 9.9e-275 950.7 1075 56.3
Rhsim08G0242500 Rhododendron simsii HOM05D005068 ORTHO05D007561 1.6e-272 943.3 1062 59.1
Carub.0002s1929 Capsella rubella HOM05D005068 ORTHO05D007561 2.3e-271 939.5 940 59.5
DCAR_026429 Daucus carota HOM05D005068 ORTHO05D007561 4.3e-270 935.3 1073 55.1
Sp5g27520 Schrenkiella parvula HOM05D005068 ORTHO05D007561 7.3e-270 934.5 1080 53.9
BcaB03g14995 Brassica carinata HOM05D005068 ORTHO05D007561 5.3e-268 928.3 939 62.6
Lj5A31T61 Lonicera japonica HOM05D005068 ORTHO05D007561 2.4e-265 919.5 892 59.3
BcaC08g46695 Brassica carinata HOM05D005068 ORTHO05D007561 7.1e-265 917.9 954 59.0
Thhalv10018056m.g Eutrema salsugineum HOM05D005068 ORTHO05D007561 1.5e-262 910.2 1067 56.0
C06p46800 Brassica napus HOM05D005068 ORTHO05D007561 2.1e-261 906.4 1057 54.3
BolC6t39723H Brassica oleracea HOM05D005068 ORTHO05D007561 1.4e-260 903.7 1066 53.8
CARHR065370 Cardamine hirsuta HOM05D005068 ORTHO05D007561 1.5e-259 900.2 955 55.9
Aa31LG4G2770 Aethionema arabicum HOM05D005068 ORTHO05D007561 6.0e-256 888.3 974 59.9
CDE05G0629 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 1.5e-254 883.6 1052 51.2
unitig_26.g8921 Utricularia gibba HOM05D005068 ORTHO05D007561 5.3e-252 875.2 1066 51.3
BraA07t31420Z Brassica rapa HOM05D005068 ORTHO05D007561 2.6e-251 872.8 964 55.5
HPP92_014041 Vanilla planifolia HOM05D005068 ORTHO05D007561 8.4e-250 867.8 1088 49.4
Nn8g38536 Nelumbo nucifera HOM05D005068 ORTHO05D007561 5.5e-249 865.1 1056 51.0
Actinidia21819 Actinidia chinensis HOM05D005068 ORTHO05D007561 5.3e-244 848.6 915 57.5
MBI13_g01677_MAGBIO Magnolia biondii HOM05D005068 ORTHO05D007561 1.4e-241 840.5 874 54.9
vmacro15071 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 2.7e-240 836.3 887 55.0
Os09g0116400 Oryza sativa ssp. japonica HOM05D005068 ORTHO05D007561 1.6e-237 827.0 1060 48.1
ATR0317G028 Amborella trichopoda HOM05D005068 ORTHO05D007561 1.0e-231 807.7 1083 49.5
SGA_v2.0_scaffold71G23904 Striga asiatica HOM05D005068 ORTHO05D007561 1.1e-228 797.7 1056 50.1
Zm00001eb008900 Zea mays HOM05D005068 ORTHO05D007561 3.0e-223 779.6 1093 45.5
SEGI_35987 Sequoiadendron giganteum HOM05D005068 ORTHO05D007561 1.3e-221 774.2 1092 46.6
Nitab4.5_0007072g0030 Nicotiana tabacum HOM05D005068 ORTHO05D007561 7.7e-219 765.0 850 54.4
TAR383G0209 Trochodendron aralioides HOM05D005068 ORTHO05D007561 3.6e-208 729.6 730 60.1
vmacro14086 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 2.2e-205 720.3 645 61.7
COL.COLO4_30833 Corchorus olitorius HOM05D005068 ORTHO05D007561 3.7e-205 719.5 598 64.5
Migut.I01119 Erythranthe guttata HOM05D005068 ORTHO05D007561 1.6e-200 704.1 1057 47.2
FAN02G4153 Fragaria x ananassa HOM05D005068 ORTHO05D007561 1.1e-196 691.4 617 62.4
SHI38508 Sapria himalayana HOM05D005068 ORTHO05D007561 8.9e-183 645.2 1042 42.8
Pp3c8_7540 Physcomitrium patens HOM05D005068 ORTHO05D007561 1.7e-181 641.0 1023 41.7
AagrBONN_evm.TU.Sc2ySwM_228.3616 Anthoceros agrestis HOM05D005068 ORTHO05D007561 3.7e-181 639.8 755 49.3
A07p38620 Brassica napus HOM05D005068 ORTHO05D007561 1.2e-166 591.7 556 60.4
Mapoly0001s0039 Marchantia polymorpha HOM05D005068 ORTHO05D007561 1.5e-166 591.3 987 39.8
Dinv37834 Davidia involucrata HOM05D005068 ORTHO05D007561 8.4e-157 558.9 498 64.5
ECA234G3781 Erigeron canadensis HOM05D005068 ORTHO05D007561 9.3e-156 555.4 924 43.5
Sc12g0010810 Simmondsia chinensis HOM05D005068 ORTHO05D007561 1.3e-154 551.6 756 48.7
CBR_g4353 Chara braunii HOM05D005068 ORTHO05D007561 1.2e-150 538.5 910 39.9
PGSC0003DMG400009145 Solanum tuberosum HOM05D005068 ORTHO05D007561 3.4e-142 510.4 634 53.0
CDE11G1047 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 4.2e-140 503.4 658 46.7
SMO356G0436 Selaginella moellendorffii HOM05D005068 ORTHO05D007561 1.1e-127 462.2 949 35.3
Dinv37835 Davidia involucrata HOM05D005068 ORTHO05D007561 1.0e-117 429.1 389 60.2
Cre10.g459600 Chlamydomonas reinhardtii HOM05D005068 ORTHO05D007561 5.9e-102 376.7 879 34.5
CDE11G0362 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 2.0e-97 361.7 371 55.8
Haze_25369 Corylus avellana HOM05D005068 ORTHO05D007561 4.5e-86 323.9 637 38.9
PRCOL_00007240 Prasinoderma coloniale HOM05D005068 ORTHO05D007561 3.7e-80 304.3 646 37.9
TAR383G0400 Trochodendron aralioides HOM05D005068 ORTHO05D007561 1.4e-79 302.4 315 54.9
Psat7g194920 Pisum sativum HOM05D005068 ORTHO05D030493 6.4e-72 276.9 289 65.4
SHI25215 Sapria himalayana HOM05D005068 ORTHO05D007561 1.1e-63 249.6 614 36.0
Cfa026526 Carpinus fangiana HOM05D005068 ORTHO05D007561 7.0e-63 246.9 713 29.3
Cc00_g06320 Coffea canephora HOM05D005068 ORTHO05D007561 2.6e-57 228.4 219 61.2
MSTRG.13912 Avicennia marina HOM05D005068 ORTHO05D019833 3.6e-51 208.0 252 59.9
vmacro14085 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 2.9e-48 198.4 231 50.2
FAN23G2170 Fragaria x ananassa HOM05D005068 ORTHO05D007561 3.8e-48 198.0 165 66.7
Psat7g194960 Pisum sativum HOM05D005068 ORTHO05D030493 3.4e-41 174.9 235 51.1
Psat4g066440 Pisum sativum HOM05D005068 ORTHO05D030493 1.2e-38 166.4 126 73.8
Hund18058 Selenicereus undatus HOM05D005068 ORTHO05D030493 6.9e-34 150.6 158 55.7
Lj5C31T11 Lonicera japonica HOM05D005068 ORTHO05D019833 4.0e-26 124.8 219 48.4
HanXRQChr04g0122031 Helianthus annuus HOM05D005068 ORTHO05D007561 6.9e-26 124.0 132 53.8
vmacro15070 Vaccinium macrocarpon HOM05D005068 ORTHO05D019833 6.4e-24 117.5 210 53.3
Sc16g0005210 Simmondsia chinensis HOM05D005068 ORTHO05D019833 3.3e-20 105.1 215 50.2
Sc16g0005100 Simmondsia chinensis HOM05D005068 ORTHO05D014954 4.3e-20 104.8 58 82.8
COL.COLO4_30832 Corchorus olitorius HOM05D005068 ORTHO05D014954 3.1e-18 98.6 51 90.2
Zm00001eb239840 Zea mays HOM05D001561 ORTHO05D001715 3.1e-18 98.6 79 59.5
ECA233G2064 Erigeron canadensis HOM05D005068 ORTHO05D007561 4.5e-17 94.7 81 59.3
Psat1g211080 Pisum sativum HOM05D000001 ORTHO05D322910 9.7e-12 77.0 49 81.6
Psat3g173480 Pisum sativum HOM05D002362 ORTHO05D002465 1.3e-11 76.6 49 81.6
Psat4g213600 Pisum sativum HOM05D002050 ORTHO05D001949 1.3e-11 76.6 49 81.6
Psat3g037200 Pisum sativum HOM05D001007 ORTHO05D012393 1.8e-10 72.8 49 75.5
Psat7g258920 Pisum sativum HOM05D002153 ORTHO05D002137 5.3e-10 71.2 49 73.5
Psat3g141160 Pisum sativum HOM05D000846 ORTHO05D001340 1.2e-09 70.1 49 73.5
Psat3g141280 Pisum sativum HOM05D000846 ORTHO05D001340 4.5e-09 68.2 48 72.9
C04p42190 Brassica napus HOM05D014151 ORTHO05D014954 2.9e-08 65.5 42 71.4
C09p50490 Brassica napus HOM05D014151 ORTHO05D014954 2.9e-08 65.5 42 71.4
C03p21460 Brassica napus HOM05D014151 ORTHO05D014954 1.1e-07 63.5 42 69.0
BolC3t14532H Brassica oleracea HOM05D014151 ORTHO05D014954 1.1e-07 63.5 42 69.0
BcaC09g47952 Brassica carinata HOM05D014151 ORTHO05D014954 2.5e-07 62.4 42 66.7
vmacro14087 Vaccinium macrocarpon HOM05D005068 ORTHO05D019833 7.9e-06 57.4 32 81.2


User provided reference genes

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