Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G16655 Trifolium pratense HOM05D002144 ORTHO05D002170 2.6e-49 198.7 126 100.0
Ca_04812_v3 Cicer arietinum L. HOM05D002144 ORTHO05D002170 1.3e-21 106.7 122 62.3
Medtr8g022300 Medicago truncatula HOM05D002144 ORTHO05D002170 8.7e-21 104.0 118 65.3
Psat4g166680 Pisum sativum HOM05D002144 ORTHO05D002170 1.8e-18 96.3 116 49.1
Ca_30856_v3 Cicer arietinum L. HOM05D002144 ORTHO05D002170 2.6e-17 92.4 114 61.4
COL.COLO4_30825 Corchorus olitorius HOM05D002144 ORTHO05D002170 1.3e-16 90.1 122 52.5
Gorai.009G144700 Gossypium raimondii HOM05D002144 ORTHO05D002170 3.2e-15 85.5 129 40.3
Atru.chr1.4136 Acer truncatum HOM05D002144 ORTHO05D002170 2.7e-14 82.4 134 47.8
Duzib235G0612 Durio zibethinus HOM05D002144 ORTHO05D002170 1.0e-13 80.5 122 44.3
Gohir.A05G138200 Gossypium hirsutum HOM05D002144 ORTHO05D002170 1.0e-13 80.5 121 39.7
Lj3g0016932 Lotus japonicus HOM05D002144 ORTHO05D002170 1.3e-13 80.1 119 57.1
PGR119G1483 Punica granatum HOM05D002144 ORTHO05D002170 1.3e-13 80.1 128 43.8
Dinv20398 Davidia involucrata HOM05D002144 ORTHO05D002170 5.1e-13 78.2 135 37.8
Gohir.D05G140350 Gossypium hirsutum HOM05D002144 ORTHO05D002170 6.6e-13 77.8 131 37.4
Duzib192G0893 Durio zibethinus HOM05D002144 ORTHO05D002170 8.7e-13 77.4 123 48.8
SalBow7G2197 Salvia bowleyana HOM05D002144 ORTHO05D002170 1.5e-12 76.6 132 47.7
CiPaw.01G214500 Carya illinoinensis HOM05D002144 ORTHO05D002170 1.9e-12 76.3 121 52.1
Hma1.2p1_0229F.1_g096900 Hydrangea macrophylla HOM05D002144 ORTHO05D002170 5.6e-12 74.7 129 45.7
TWI23G1155 Tripterygium wilfordii HOM05D002144 ORTHO05D002170 5.6e-12 74.7 127 37.0
Ciclev10026754m.g Citrus clementina HOM05D002144 ORTHO05D002170 7.4e-12 74.3 133 49.6
Dinv37840 Davidia involucrata HOM05D002144 ORTHO05D002170 9.6e-12 73.9 122 39.3
VMungo0331G1113 Vigna mungo HOM05D002144 ORTHO05D002170 2.8e-11 72.4 120 55.0
Actinidia24441 Actinidia chinensis HOM05D002144 ORTHO05D002170 4.8e-11 71.6 134 44.0
TWI14G1240 Tripterygium wilfordii HOM05D002144 ORTHO05D002170 4.8e-11 71.6 126 48.4
GSVIVG01016701001 Vitis vinifera HOM05D002144 ORTHO05D002170 8.1e-11 70.9 127 38.6
FAN14G0119 Fragaria x ananassa HOM05D002144 ORTHO05D002170 1.1e-10 70.5 138 38.4
Actinidia21816 Actinidia chinensis HOM05D002144 ORTHO05D002170 1.8e-10 69.7 125 47.2
FvH4_6g35330 Fragaria vesca HOM05D002144 ORTHO05D002170 2.4e-10 69.3 137 38.0
FAN09G1588 Fragaria x ananassa HOM05D002144 ORTHO05D002170 2.4e-10 69.3 137 38.0
Migut.I01115 Erythranthe guttata HOM05D002144 ORTHO05D002170 3.1e-10 68.9 111 52.3
FAN02G3229 Fragaria x ananassa HOM05D002144 ORTHO05D002170 5.3e-10 68.2 131 47.3
Nn8g38544 Nelumbo nucifera HOM05D002144 ORTHO05D002170 5.3e-10 68.2 126 45.2
Sc15g0000660 Simmondsia chinensis HOM05D002144 ORTHO05D002170 5.3e-10 68.2 126 53.2
SGA_v2.0_scaffold4G02090 Striga asiatica HOM05D002144 ORTHO05D002170 5.3e-10 68.2 118 53.4
MD09G1176600 Malus domestica HOM05D002144 ORTHO05D002170 6.9e-10 67.8 126 46.0
RcHm_v2.0_Chr2g0146781 Rosa chinensis HOM05D002144 ORTHO05D002170 6.9e-10 67.8 130 48.5
Oeu059028.1 Olea europaea HOM05D002144 ORTHO05D002170 9.0e-10 67.4 137 43.8
MD17G1150200 Malus domestica HOM05D002144 ORTHO05D002170 1.2e-09 67.0 122 48.4
Thecc.06G126600 Theobroma cacao HOM05D002144 ORTHO05D002170 1.2e-09 67.0 115 49.6
Glyma.07G043000 Glycine max HOM05D002144 ORTHO05D002170 1.5e-09 66.6 106 54.7
vmacro15066 Vaccinium macrocarpon HOM05D002144 ORTHO05D002170 2.6e-09 65.9 120 44.2
MSTRG.10926 Avicennia marina HOM05D002144 ORTHO05D002170 3.4e-09 65.5 133 47.4
Rhsim08G0242200 Rhododendron simsii HOM05D002144 ORTHO05D002170 4.5e-09 65.1 117 44.4
PGR102G1253 Punica granatum HOM05D002144 ORTHO05D002170 5.8e-09 64.7 116 34.5
CANSAT56G1652 Cannabis sativa HOM05D002144 ORTHO05D002170 7.6e-09 64.3 29 96.6
Phvul.010G126600 Phaseolus vulgaris HOM05D002144 ORTHO05D002170 7.6e-09 64.3 109 38.5
Hund05715 Selenicereus undatus HOM05D002144 ORTHO05D002170 9.9e-09 63.9 140 39.3
MSTRG.9537 Avicennia marina HOM05D002144 ORTHO05D002170 1.3e-08 63.5 129 48.1
Oeu008518.1 Olea europaea HOM05D002144 ORTHO05D002170 1.7e-08 63.2 140 40.7
Aqoxy7G00990 Aquilegia oxysepala HOM05D002144 ORTHO05D002170 2.2e-08 62.8 136 41.2
Glyma.16G011400 Glycine max HOM05D002144 ORTHO05D002170 2.2e-08 62.8 99 60.6
unitig_748.g8062 Utricularia gibba HOM05D002144 ORTHO05D002170 2.2e-08 62.8 120 40.0
ATR0681G069 Amborella trichopoda HOM05D002144 ORTHO05D002170 2.9e-08 62.4 126 33.3
Cc04_g00930 Coffea canephora HOM05D002144 ORTHO05D002170 2.9e-08 62.4 137 44.5
ECA232G0343 Erigeron canadensis HOM05D003140 ORTHO05D003851 2.9e-08 62.4 134 38.8
arahy.Tifrunner.gnm1.ann1.MBM2VS Arachis hypogaea HOM05D002144 ORTHO05D002170 3.8e-08 62.0 96 56.2
Lalb_Chr10g0101281 Lupinus albus HOM05D002144 ORTHO05D002170 3.8e-08 62.0 29 93.1
CAN.G1743.3 Capsicum annuum HOM05D002144 ORTHO05D002170 4.9e-08 61.6 63 50.8
Gohir.A09G075400 Gossypium hirsutum HOM05D002144 ORTHO05D002170 6.4e-08 61.2 43 65.1
Gohir.D09G075100 Gossypium hirsutum HOM05D002144 ORTHO05D002170 6.4e-08 61.2 43 65.1
PGSC0003DMG400004897 Solanum tuberosum HOM05D002144 ORTHO05D002170 6.4e-08 61.2 63 50.8
Migut.D00918 Erythranthe guttata HOM05D002144 ORTHO05D002170 1.1e-07 60.5 132 46.2
Potri.001G164800 Populus trichocarpa HOM05D002144 ORTHO05D002170 1.1e-07 60.5 29 89.7
Gorai.006G090200 Gossypium raimondii HOM05D002144 ORTHO05D002170 1.4e-07 60.1 41 65.9
Ah.08g217150 Amaranthus hybridus HOM05D002144 ORTHO05D002170 1.9e-07 59.7 40 65.0
MSTRG.9534 Avicennia marina HOM05D002144 ORTHO05D002170 1.9e-07 59.7 123 39.0
EL10Ac7g16456 Beta vulgaris HOM05D002144 ORTHO05D002170 1.9e-07 59.7 129 31.0
MBI19_g38000_MAGBIO Magnolia biondii HOM05D002144 ORTHO05D002170 1.9e-07 59.7 125 32.8
Cpa.g.sc25.165 Carica papaya HOM05D002144 ORTHO05D002170 3.2e-07 58.9 29 86.2
CiPaw.02G133200 Carya illinoinensis HOM05D002144 ORTHO05D002170 3.2e-07 58.9 29 86.2
Solyc06g063060.3 Solanum lycopersicum HOM05D002144 ORTHO05D002170 3.2e-07 58.9 62 50.0
Sopen06g022510 Solanum pennellii HOM05D002144 ORTHO05D002170 3.2e-07 58.9 62 50.0
Prupe.3G035700 Prunus persica HOM05D002144 ORTHO05D002170 4.2e-07 58.5 29 86.2
QL05p002979 Quercus lobata HOM05D002144 ORTHO05D002170 4.2e-07 58.5 129 42.6
Peaxi162Scf00207g01541 Petunia axillaris HOM05D002144 ORTHO05D002170 5.5e-07 58.2 29 82.8
Manes.04G148800 Manihot esculenta HOM05D002144 ORTHO05D002170 9.3e-07 57.4 29 82.8
Manes.11G015300 Manihot esculenta HOM05D002144 ORTHO05D002170 9.3e-07 57.4 29 82.8
Carub.0001s4330 Capsella rubella HOM05D002144 ORTHO05D002170 1.2e-06 57.0 29 82.8
CARHR044400 Cardamine hirsuta HOM05D002144 ORTHO05D002170 1.2e-06 57.0 29 82.8
Potri.003G070500 Populus trichocarpa HOM05D002144 ORTHO05D002170 1.2e-06 57.0 29 82.8
Sabra01G0128200 Salix brachista HOM05D002144 ORTHO05D002170 1.2e-06 57.0 29 82.8
Aa31LG8G1430 Aethionema arabicum HOM05D002144 ORTHO05D002170 1.6e-06 56.6 29 82.8
Eucgr.I02133 Eucalyptus grandis HOM05D002144 ORTHO05D002170 1.6e-06 56.6 29 82.8
PSO386G0162 Papaver somniferum HOM05D002144 ORTHO05D002170 1.6e-06 56.6 117 45.3
Lsat_1_v5_gn_4_91600 Lactuca sativa HOM05D002144 ORTHO05D002170 2.1e-06 56.2 29 79.3
AL1G62770 Arabidopsis lyrata HOM05D002144 ORTHO05D002170 2.7e-06 55.8 29 79.3
AT1G54070 Arabidopsis thaliana HOM05D002144 ORTHO05D002170 2.7e-06 55.8 29 79.3
HanXRQChr04g0094481 Helianthus annuus HOM05D002144 ORTHO05D002170 2.7e-06 55.8 123 40.7
Sed0008740 Sechium edule HOM05D002144 ORTHO05D002170 2.7e-06 55.8 29 79.3
FAN05G3077 Fragaria x ananassa HOM05D002144 ORTHO05D002170 3.5e-06 55.5 29 79.3
MBI13_g01666_MAGBIO Magnolia biondii HOM05D002144 ORTHO05D002170 3.5e-06 55.5 119 42.9
PSO729G0021 Papaver somniferum HOM05D002144 ORTHO05D002170 3.5e-06 55.5 29 75.9
Aa31LG10G1360 Aethionema arabicum HOM05D000815 ORTHO05D000636 4.6e-06 55.1 29 82.8
Eucgr.B01910 Eucalyptus grandis HOM05D002144 ORTHO05D002170 4.6e-06 55.1 29 75.9
AL3G26430 Arabidopsis lyrata HOM05D002144 ORTHO05D002170 6.0e-06 54.7 29 82.8
Migut.N02089 Erythranthe guttata HOM05D002144 ORTHO05D002170 6.0e-06 54.7 29 75.9
Zm00001eb040560 Zea mays HOM05D002144 ORTHO05D002170 6.0e-06 54.7 29 75.9
BcaB07g33437 Brassica carinata HOM05D002144 ORTHO05D002170 7.9e-06 54.3 29 79.3
Cpa.g.sc327.9 Carica papaya HOM05D002144 ORTHO05D002170 7.9e-06 54.3 29 75.9
DCAR_016099 Daucus carota HOM05D002144 ORTHO05D002170 7.9e-06 54.3 119 48.7
Thhalv10011865m.g Eutrema salsugineum HOM05D002144 ORTHO05D002170 7.9e-06 54.3 29 75.9
MBI18_g06040_MAGBIO Magnolia biondii HOM05D002144 ORTHO05D002170 7.9e-06 54.3 29 75.9
PSO724G0168 Papaver somniferum HOM05D002144 ORTHO05D002170 7.9e-06 54.3 29 72.4
Sc09g0002900 Simmondsia chinensis HOM05D002144 ORTHO05D002170 7.9e-06 54.3 29 72.4


User provided reference genes

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