Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G1662 Trifolium pratense HOM05D004265 ORTHO05D005175 2.3e-105 385.6 198 100.0
Medtr7g112110 Medicago truncatula HOM05D004265 ORTHO05D005175 6.0e-61 238.0 225 62.2
Lj1g0016387 Lotus japonicus HOM05D004265 ORTHO05D005175 6.5e-55 218.0 228 55.3
Psat3g012800 Pisum sativum HOM05D004265 ORTHO05D005175 2.7e-53 212.6 229 56.3
Ca_09300_v3 Cicer arietinum L. HOM05D001672 ORTHO05D007349 1.0e-52 210.7 222 56.8
Medtr7g112120 Medicago truncatula HOM05D004265 ORTHO05D005175 4.1e-49 198.7 226 54.0
Medtr1g084040 Medicago truncatula HOM05D004265 ORTHO05D005175 2.6e-48 196.1 228 50.0
TPR.G2612 Trifolium pratense HOM05D004265 ORTHO05D005175 3.4e-48 195.7 227 50.2
TWI56G1455 Tripterygium wilfordii HOM05D004265 ORTHO05D005175 4.5e-48 195.3 227 50.2
arahy.Tifrunner.gnm1.ann1.7983KJ Arachis hypogaea HOM05D004265 ORTHO05D005175 6.5e-47 191.4 227 49.3
arahy.Tifrunner.gnm1.ann1.S7F1TF Arachis hypogaea HOM05D004265 ORTHO05D005175 6.5e-47 191.4 227 49.3
Glyma.20G097600 Glycine max HOM05D004265 ORTHO05D005175 2.5e-46 189.5 227 48.0
Thecc.05G323000 Theobroma cacao HOM05D004265 ORTHO05D005175 4.2e-46 188.7 228 48.7
Phvul.007G201300 Phaseolus vulgaris HOM05D004265 ORTHO05D005175 5.5e-46 188.3 227 48.5
Eucgr.H03290 Eucalyptus grandis HOM05D004265 ORTHO05D005175 2.1e-45 186.4 226 48.2
CANSAT54G0622 Cannabis sativa HOM05D004265 ORTHO05D005175 2.7e-45 186.0 228 50.0
Lj5g0009766 Lotus japonicus HOM05D004265 ORTHO05D005175 3.6e-45 185.7 227 48.0
VMungo0720G2336 Vigna mungo HOM05D004265 ORTHO05D005175 6.1e-45 184.9 227 46.7
Phvul.001G225100 Phaseolus vulgaris HOM05D004265 ORTHO05D005175 2.3e-44 183.0 227 46.3
Atru.chr2.195 Acer truncatum HOM05D004265 ORTHO05D005175 3.9e-44 182.2 225 47.6
SalBow7G1726 Salvia bowleyana HOM05D004265 ORTHO05D005175 3.9e-44 182.2 224 48.2
ECA234G3802 Erigeron canadensis HOM05D004265 ORTHO05D005175 5.1e-44 181.8 224 47.8
Glyma.10G147100 Glycine max HOM05D004265 ORTHO05D005175 5.1e-44 181.8 227 46.7
CiPaw.08G155500 Carya illinoinensis HOM05D004265 ORTHO05D005175 6.7e-44 181.4 228 46.5
Glyma.19G228500 Glycine max HOM05D004265 ORTHO05D005175 6.7e-44 181.4 227 48.0
Dinv30893 Davidia involucrata HOM05D004265 ORTHO05D005175 8.8e-44 181.0 188 50.5
RcHm_v2.0_Chr3g0457041 Rosa chinensis HOM05D004265 ORTHO05D005175 1.1e-43 180.6 234 47.4
Lsat_1_v5_gn_5_104100 Lactuca sativa HOM05D004265 ORTHO05D005175 1.5e-43 180.3 224 46.9
Potri.005G017400 Populus trichocarpa HOM05D004265 ORTHO05D005175 3.3e-43 179.1 228 47.4
Actinidia01508 Actinidia chinensis HOM05D004265 ORTHO05D005175 4.3e-43 178.7 228 46.5
MD12G1206000 Malus domestica HOM05D004265 ORTHO05D005175 3.7e-42 175.6 224 47.3
QL03p013649 Quercus lobata HOM05D004265 ORTHO05D005175 4.8e-42 175.3 231 48.1
QL03p039848 Quercus lobata HOM05D004265 ORTHO05D005175 1.1e-41 174.1 226 47.3
Lalb_Chr18g0046091 Lupinus albus HOM05D004265 ORTHO05D005175 1.8e-41 173.3 222 45.9
Ciclev10002200m.g Citrus clementina HOM05D004265 ORTHO05D005175 2.4e-41 172.9 228 45.6
PSO210G0294 Papaver somniferum HOM05D004265 ORTHO05D005175 5.3e-41 171.8 228 45.6
Dinv24444 Davidia involucrata HOM05D004265 ORTHO05D005175 9.1e-41 171.0 228 43.0
HanXRQChr10g0294471 Helianthus annuus HOM05D004265 ORTHO05D005175 9.1e-41 171.0 224 46.0
Lalb_Chr02g0147811 Lupinus albus HOM05D004265 ORTHO05D005175 1.5e-40 170.2 227 44.5
Cpa.g.sc48.160 Carica papaya HOM05D004265 ORTHO05D005175 2.9e-39 166.0 227 44.5
MBI18_g17317_MAGBIO Magnolia biondii HOM05D004265 ORTHO05D005175 6.5e-39 164.9 227 44.5
PSO761G0637 Papaver somniferum HOM05D004265 ORTHO05D005175 8.5e-39 164.5 228 43.9
Potri.013G008700 Populus trichocarpa HOM05D004265 ORTHO05D005175 8.5e-39 164.5 228 43.9
CSS0008259 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 1.9e-38 163.3 232 44.0
Rhsim05G0126500 Rhododendron simsii HOM05D004265 ORTHO05D005175 3.2e-38 162.5 181 50.3
Hma1.2p1_0052F.1_g030750 Hydrangea macrophylla HOM05D004265 ORTHO05D005175 4.2e-38 162.2 228 43.9
Carub.0002s0772 Capsella rubella HOM05D004265 ORTHO05D005175 9.4e-38 161.0 221 42.5
Sabra05G0011400 Salix brachista HOM05D004265 ORTHO05D005175 9.4e-38 161.0 228 43.9
CiPaw.07G029600 Carya illinoinensis HOM05D004265 ORTHO05D005175 2.7e-37 159.5 228 44.7
AUR62006753 Chenopodium quinoa HOM05D004265 ORTHO05D005175 2.7e-37 159.5 227 42.7
Sc16g0009030 Simmondsia chinensis HOM05D004265 ORTHO05D005175 6.1e-37 158.3 227 42.7
Prupe.6G313200 Prunus persica HOM05D004265 ORTHO05D005175 1.0e-36 157.5 224 43.3
Sed0011283 Sechium edule HOM05D004265 ORTHO05D005175 1.0e-36 157.5 225 43.6
Hund21868 Selenicereus undatus HOM05D004265 ORTHO05D005175 1.0e-36 157.5 227 41.9
Duzib106G0903 Durio zibethinus HOM05D004265 ORTHO05D005175 1.4e-36 157.1 228 42.5
unitig_37.g12619 Utricularia gibba HOM05D004265 ORTHO05D005175 1.4e-36 157.1 220 42.3
HPP92_026862 Vanilla planifolia HOM05D004265 ORTHO05D005175 2.3e-36 156.4 183 48.1
Ah.04g158690 Amaranthus hybridus HOM05D004265 ORTHO05D005175 5.1e-36 155.2 185 45.4
AUR62000397 Chenopodium quinoa HOM05D004265 ORTHO05D005175 5.1e-36 155.2 227 41.9
Migut.B00969 Erythranthe guttata HOM05D004265 ORTHO05D005175 6.7e-36 154.8 219 44.7
SHI18053 Sapria himalayana HOM05D001712 ORTHO05D001731 1.5e-35 153.7 181 47.5
Ca_10171_v3 Cicer arietinum L. HOM05D004265 ORTHO05D005175 2.0e-35 153.3 227 44.9
PGR031G2746 Punica granatum HOM05D004265 ORTHO05D005175 2.6e-35 152.9 228 41.7
CARHR055200 Cardamine hirsuta HOM05D004265 ORTHO05D005175 4.4e-35 152.1 227 41.4
Nn3g16212 Nelumbo nucifera HOM05D004265 ORTHO05D005175 4.4e-35 152.1 228 41.7
Glyma.03G231300 Glycine max HOM05D004265 ORTHO05D005175 7.4e-35 151.4 238 43.3
EL10Ac4g09452 Beta vulgaris HOM05D004265 ORTHO05D005175 9.7e-35 151.0 227 40.1
Zm00001eb396130 Zea mays HOM05D004265 ORTHO05D005175 2.2e-34 149.8 226 41.2
Aqoxy2G02767 Aquilegia oxysepala HOM05D004265 ORTHO05D005175 3.7e-34 149.1 228 39.9
AT1G56423 Arabidopsis thaliana HOM05D004265 ORTHO05D005175 1.8e-33 146.7 227 40.1
VMungo1383G0172 Vigna mungo HOM05D004265 ORTHO05D005175 1.8e-33 146.7 224 40.2
Lj5P334T30 Lonicera japonica HOM05D004265 ORTHO05D005175 3.1e-33 146.0 183 44.8
Cfa006702 Carpinus fangiana HOM05D004265 ORTHO05D005175 5.3e-33 145.2 228 42.5
AL1G66120 Arabidopsis lyrata HOM05D004265 ORTHO05D005175 9.1e-33 144.4 227 39.2
FAN05G3791 Fragaria x ananassa HOM05D004265 ORTHO05D005175 1.6e-32 143.7 224 41.1
FAN09G1150 Fragaria x ananassa HOM05D004265 ORTHO05D005175 1.6e-32 143.7 224 41.1
Os03g0307000 Oryza sativa ssp. japonica HOM05D004265 ORTHO05D005175 1.6e-32 143.7 228 38.2
Cc02_g35030 Coffea canephora HOM05D004265 ORTHO05D005175 2.0e-32 143.3 220 40.9
Duzib177G0587 Durio zibethinus HOM05D004265 ORTHO05D005175 2.0e-32 143.3 228 41.7
CDE11G0488 Ceratophyllum demersum HOM05D004265 ORTHO05D005175 3.5e-32 142.5 225 40.0
FvH4_6g07440 Fragaria vesca HOM05D004265 ORTHO05D005175 4.5e-32 142.1 224 41.1
FAN14G5021 Fragaria x ananassa HOM05D004265 ORTHO05D005175 4.5e-32 142.1 224 41.1
Manes.08G111300 Manihot esculenta HOM05D004265 ORTHO05D005175 4.5e-32 142.1 222 43.2
Lsat_1_v5_gn_9_122281 Lactuca sativa HOM05D004265 ORTHO05D005175 1.3e-31 140.6 177 45.8
Psat0s3400g0040 Pisum sativum HOM05D004265 ORTHO05D005175 1.7e-31 140.2 227 39.6
MD04G1193100 Malus domestica HOM05D004265 ORTHO05D005175 3.8e-31 139.0 181 45.3
FAN02G3541 Fragaria x ananassa HOM05D004265 ORTHO05D005175 8.5e-31 137.9 181 45.3
GSVIVG01031240001 Vitis vinifera HOM05D004265 ORTHO05D005175 1.5e-30 137.1 228 39.0
Sp2g06420 Schrenkiella parvula HOM05D004265 ORTHO05D005175 1.9e-30 136.7 222 40.5
Peaxi162Scf00750g00013 Petunia axillaris HOM05D001712 ORTHO05D001731 2.5e-30 136.3 180 42.8
HanXRQChr03g0072861 Helianthus annuus HOM05D004265 ORTHO05D005175 3.2e-30 136.0 177 44.6
Manes.09G176700 Manihot esculenta HOM05D004265 ORTHO05D005175 4.2e-30 135.6 222 41.0
Haze_04061 Corylus avellana HOM05D004265 ORTHO05D005175 7.2e-30 134.8 200 44.0
DCAR_029352 Daucus carota HOM05D004265 ORTHO05D005175 2.1e-29 133.3 181 40.3
ATR0796G255 Amborella trichopoda HOM05D004265 ORTHO05D005175 3.6e-29 132.5 228 37.3
SGA_v2.0_scaffold53G19289 Striga asiatica HOM05D004265 ORTHO05D005175 6.1e-29 131.7 219 39.3
Peaxi162Scf00484g00005 Petunia axillaris HOM05D004265 ORTHO05D005175 3.0e-28 129.4 182 41.8
SEGI_19544 Sequoiadendron giganteum HOM05D004265 ORTHO05D005175 6.7e-28 128.3 222 37.8
SMO119G0102 Selaginella moellendorffii HOM05D004265 ORTHO05D005175 7.5e-27 124.8 179 41.3
Gohir.A13G175800 Gossypium hirsutum HOM05D004265 ORTHO05D005175 9.7e-27 124.4 228 38.6
Zm00001eb014630 Zea mays HOM05D004265 ORTHO05D005175 2.2e-26 123.2 164 42.7
Nitab4.5_0000368g0100 Nicotiana tabacum HOM05D004265 ORTHO05D005175 2.8e-26 122.9 225 35.6
Nitab4.5_0004873g0020 Nicotiana tabacum HOM05D004265 ORTHO05D005175 2.8e-26 122.9 225 35.6
DCAR_005425 Daucus carota HOM05D004265 ORTHO05D005175 3.7e-26 122.5 153 45.1
PGSC0003DMG400002801 Solanum tuberosum HOM05D004265 ORTHO05D005175 3.7e-26 122.5 225 35.6
arahy.Tifrunner.gnm1.ann1.F5CMD4 Arachis hypogaea HOM05D004265 ORTHO05D005175 6.3e-26 121.7 113 53.1
Solyc01g100480.3 Solanum lycopersicum HOM05D004265 ORTHO05D005175 6.3e-26 121.7 225 35.6
Gohir.D13G181500 Gossypium hirsutum HOM05D004265 ORTHO05D005175 3.1e-25 119.4 228 37.3
Gorai.013G207000 Gossypium raimondii HOM05D004265 ORTHO05D005175 3.1e-25 119.4 228 37.3
Sopen01g043990 Solanum pennellii HOM05D004265 ORTHO05D005175 3.1e-25 119.4 225 35.1
Oeu013207.1 Olea europaea HOM05D004265 ORTHO05D005175 3.5e-24 115.9 151 46.4
BcaC04g22056 Brassica carinata HOM05D004265 ORTHO05D005175 6.5e-23 111.7 227 35.2
BolC9t55323H Brassica oleracea HOM05D004265 ORTHO05D005175 6.5e-23 111.7 227 35.2
C09p24060 Brassica napus HOM05D004265 ORTHO05D005175 1.9e-22 110.2 223 35.4
Actinidia25851 Actinidia chinensis HOM05D004265 ORTHO05D005175 3.2e-22 109.4 187 38.5
Peaxi162Scf00673g00321 Petunia axillaris HOM05D004265 ORTHO05D005175 4.2e-22 109.0 220 34.5
THA.LOC104816889 Tarenaya hassleriana HOM05D004265 ORTHO05D005175 4.2e-22 109.0 223 37.7
CSS0024329 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 9.4e-22 107.8 191 35.1
CSS0041734 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 2.1e-21 106.7 191 34.6
BraA09t37526Z Brassica rapa HOM05D004265 ORTHO05D005175 3.6e-21 105.9 220 35.0
CDE05G2260 Ceratophyllum demersum HOM05D004265 ORTHO05D005175 3.6e-21 105.9 136 46.3
Gohir.A11G293141 Gossypium hirsutum HOM05D004265 ORTHO05D005175 4.7e-21 105.5 228 33.3
Gohir.D11G299703 Gossypium hirsutum HOM05D004265 ORTHO05D005175 4.7e-21 105.5 228 33.3
Gohir.D11G307566 Gossypium hirsutum HOM05D004265 ORTHO05D005175 4.7e-21 105.5 228 33.3
Gorai.007G338000 Gossypium raimondii HOM05D004265 ORTHO05D005175 4.7e-21 105.5 228 33.3
HPP92_003567 Vanilla planifolia HOM05D004265 ORTHO05D005175 4.7e-21 105.5 227 34.4
SEGI_10604 Sequoiadendron giganteum HOM05D004265 ORTHO05D005175 6.1e-21 105.1 193 35.2
BcaB07g31123 Brassica carinata HOM05D004265 ORTHO05D005175 8.0e-21 104.8 227 33.9
Thhalv10023634m.g Eutrema salsugineum HOM05D004265 ORTHO05D005175 1.0e-20 104.4 227 33.9
Aa31LG2G11490 Aethionema arabicum HOM05D004265 ORTHO05D005175 1.8e-20 103.6 227 36.1
AagrBONN_evm.TU.Sc2ySwM_228.834 Anthoceros agrestis HOM05D004265 ORTHO05D005175 1.8e-20 103.6 188 35.6
PGSC0003DMG400009008 Solanum tuberosum HOM05D004265 ORTHO05D005175 2.3e-20 103.2 192 33.3
TAR362G0651 Trochodendron aralioides HOM05D004265 ORTHO05D005175 2.3e-20 103.2 109 54.1
DCAR_025282 Daucus carota HOM05D004265 ORTHO05D005175 4.0e-20 102.4 153 39.2
arahy.Tifrunner.gnm1.ann1.7KQ9VF Arachis hypogaea HOM05D004265 ORTHO05D005175 5.2e-20 102.1 222 34.2
arahy.Tifrunner.gnm1.ann1.K90Y16 Arachis hypogaea HOM05D004265 ORTHO05D005175 5.2e-20 102.1 222 34.2
CAN.G100.73 Capsicum annuum HOM05D004265 ORTHO05D005175 5.7e-19 98.6 199 34.7
GSVIVG01019978001 Vitis vinifera HOM05D000618 ORTHO05D000454 5.7e-19 98.6 234 34.2
Solyc01g079460.2 Solanum lycopersicum HOM05D004265 ORTHO05D005175 7.5e-19 98.2 187 33.7
ClCG00G002440 Citrullus lanatus HOM05D004265 ORTHO05D005175 1.3e-18 97.4 226 33.2
ClCG02G014940 Citrullus lanatus HOM05D004265 ORTHO05D005175 1.3e-18 97.4 226 33.2
MELO3C004187.2 Cucumis melo HOM05D004265 ORTHO05D005175 1.7e-18 97.1 227 32.6
A09p19080 Brassica napus HOM05D004265 ORTHO05D005175 2.2e-18 96.7 220 33.2
Sopen01g031230 Solanum pennellii HOM05D004265 ORTHO05D005175 2.2e-18 96.7 187 32.6
Lj2A1205T38 Lonicera japonica HOM05D004265 ORTHO05D005175 3.7e-18 95.9 189 38.6
Rhsim01G0290900 Rhododendron simsii HOM05D004265 ORTHO05D005175 8.3e-18 94.7 195 35.9
Lsat_1_v5_gn_7_81020 Lactuca sativa HOM05D004265 ORTHO05D005175 1.4e-17 94.0 107 46.7
Pp3c20_10160 Physcomitrium patens HOM05D004265 ORTHO05D005175 4.1e-17 92.4 188 34.0
Pp3c8_19980 Physcomitrium patens HOM05D004265 ORTHO05D005175 3.5e-16 89.4 188 32.4
COL.COLO4_05553 Corchorus olitorius HOM05D004265 ORTHO05D005175 5.9e-16 88.6 181 33.7
Dinv10100 Davidia involucrata HOM05D004265 ORTHO05D005175 5.9e-16 88.6 184 33.7
Sed0005794 Sechium edule HOM05D004265 ORTHO05D005175 1.0e-15 87.8 227 30.0
CiPaw.14G122500 Carya illinoinensis HOM05D002542 ORTHO05D012505 1.7e-15 87.0 89 58.4
Nitab4.5_0003540g0020 Nicotiana tabacum HOM05D004265 ORTHO05D005175 1.1e-14 84.3 186 32.8
Mapoly0127s0047 Marchantia polymorpha HOM05D004265 ORTHO05D005175 7.2e-14 81.6 183 29.5
Oeu016567.1 Olea europaea HOM05D004265 ORTHO05D005175 7.2e-14 81.6 67 56.7
Thecc.01G291900 Theobroma cacao HOM05D004265 ORTHO05D005175 2.7e-13 79.7 47 70.2
Lsat_1_v5_gn_9_123981 Lactuca sativa HOM05D001336 ORTHO05D001211 1.4e-12 77.4 103 44.7
CiPaw.14G122400 Carya illinoinensis HOM05D004265 ORTHO05D005175 5.2e-12 75.5 67 65.7
Lsat_1_v5_gn_6_35861 Lactuca sativa HOM05D004265 ORTHO05D005175 1.5e-11 73.9 63 58.7
Hma1.2p1_0486F.1_g163300 Hydrangea macrophylla HOM05D004265 ORTHO05D005175 3.4e-11 72.8 153 32.0
CsaV3_2G007060 Cucumis sativus L. HOM05D004265 ORTHO05D005175 7.5e-11 71.6 159 32.7
DCAR_018300 Daucus carota HOM05D004265 ORTHO05D005175 3.1e-09 66.2 194 27.8
SalBow2G0857 Salvia bowleyana HOM05D004265 ORTHO05D005175 7.0e-09 65.1 98 39.8
Peaxi162Scf00691g00218 Petunia axillaris HOM05D004265 ORTHO05D005175 1.2e-08 64.3 155 30.3
Lsat_1_v5_gn_3_11681 Lactuca sativa HOM05D004265 ORTHO05D005175 1.3e-07 60.8 112 41.1
Nitab4.5_0008277g0030 Nicotiana tabacum HOM05D004265 ORTHO05D005175 1.7e-07 60.5 155 29.7


User provided reference genes

Program Settings