Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G16595 Trifolium pratense HOM05D003074 ORTHO05D002434 1.3e-48 196.1 101 100.0
Medtr3g051530 Medicago truncatula HOM05D003074 ORTHO05D002434 1.5e-36 156.0 101 81.2
Medtr3g051510 Medicago truncatula HOM05D003074 ORTHO05D002434 1.3e-35 152.9 101 81.2
Medtr3g051570 Medicago truncatula HOM05D003074 ORTHO05D002434 3.2e-34 148.3 102 77.5
Medtr3g051610 Medicago truncatula HOM05D003074 ORTHO05D002434 5.5e-34 147.5 101 75.2
Ca_01715_v3 Cicer arietinum L. HOM05D003074 ORTHO05D002434 3.5e-33 144.8 101 73.3
Ca_30684_v3 Cicer arietinum L. HOM05D003074 ORTHO05D002434 3.5e-33 144.8 101 73.3
Glyma.08G316000 Glycine max HOM05D003074 ORTHO05D002434 5.9e-28 127.5 106 67.9
Glyma.18G096700 Glycine max HOM05D003074 ORTHO05D002434 5.5e-26 120.9 106 67.9
Phvul.006G043100 Phaseolus vulgaris HOM05D003074 ORTHO05D002434 2.7e-25 118.6 100 65.0
Lj6g0015217 Lotus japonicus HOM05D003074 ORTHO05D002434 4.3e-23 111.3 105 61.9
TPR.G36054 Trifolium pratense HOM05D003074 ORTHO05D002434 4.8e-22 107.8 69 87.0
TPR.G34803 Trifolium pratense HOM05D003074 ORTHO05D002434 2.6e-20 102.1 53 98.1
Glyma.02G290900 Glycine max HOM05D003074 ORTHO05D002434 1.7e-19 99.4 100 58.0
Duzib213G0915 Durio zibethinus HOM05D003074 ORTHO05D002434 2.1e-17 92.4 123 48.0
Gohir.D05G369300 Gossypium hirsutum HOM05D003074 ORTHO05D002434 2.1e-17 92.4 120 50.8
Gorai.009G438000 Gossypium raimondii HOM05D003074 ORTHO05D002434 2.1e-17 92.4 120 50.8
Thecc.07G037400 Theobroma cacao HOM05D003074 ORTHO05D002434 3.6e-17 91.7 131 45.8
Gohir.A04G016900 Gossypium hirsutum HOM05D003074 ORTHO05D002434 1.0e-16 90.1 120 49.2
COL.COLO4_09658 Corchorus olitorius HOM05D003074 ORTHO05D002434 2.3e-16 89.0 131 45.0
Lalb_Chr15g0081141 Lupinus albus HOM05D003074 ORTHO05D002434 2.3e-16 89.0 111 50.5
Oeu042936.1 Olea europaea HOM05D003074 ORTHO05D002434 3.9e-16 88.2 103 48.5
TWI38G1886 Tripterygium wilfordii HOM05D003074 ORTHO05D002434 3.9e-16 88.2 117 50.4
Duzib268G1655 Durio zibethinus HOM05D003074 ORTHO05D002434 5.1e-16 87.8 125 44.8
Lsat_1_v5_gn_9_93960 Lactuca sativa HOM05D003074 ORTHO05D002434 1.1e-15 86.7 115 46.1
TAR624G1270 Trochodendron aralioides HOM05D003074 ORTHO05D002434 1.5e-15 86.3 116 47.4
Haze_09674 Corylus avellana HOM05D003074 ORTHO05D002434 4.4e-15 84.7 123 43.9
Gorai.002G088300 Gossypium raimondii HOM05D003074 ORTHO05D002434 7.4e-15 84.0 109 50.5
ECA240G4169 Erigeron canadensis HOM05D003074 ORTHO05D002434 9.7e-15 83.6 101 50.5
CiPaw.12G129500 Carya illinoinensis HOM05D003074 ORTHO05D002434 1.3e-14 83.2 65 67.7
Cpa.g.sc97.7 Carica papaya HOM05D003074 ORTHO05D002434 1.7e-14 82.8 120 46.7
Manes.03G129100 Manihot esculenta HOM05D003074 ORTHO05D002434 1.7e-14 82.8 121 47.1
Cfa020350 Carpinus fangiana HOM05D003074 ORTHO05D002434 2.2e-14 82.4 121 44.6
CiPaw.11G189000 Carya illinoinensis HOM05D003074 ORTHO05D002434 2.2e-14 82.4 58 72.4
QL08p010341 Quercus lobata HOM05D003074 ORTHO05D002434 2.2e-14 82.4 124 42.7
Dinv40751 Davidia involucrata HOM05D003074 ORTHO05D002434 2.8e-14 82.0 125 42.4
LjContig00272g0022666 Lotus japonicus HOM05D003074 ORTHO05D002434 2.8e-14 82.0 103 51.5
Lalb_Chr04g0248431 Lupinus albus HOM05D003074 ORTHO05D002434 2.8e-14 82.0 103 51.5
Medtr5g092710 Medicago truncatula HOM05D003074 ORTHO05D002434 4.8e-14 81.3 96 50.0
Sed0007461 Sechium edule HOM05D003074 ORTHO05D002434 6.3e-14 80.9 114 47.4
Nn1g03544 Nelumbo nucifera HOM05D003074 ORTHO05D002434 8.2e-14 80.5 107 45.8
Nn5g29371 Nelumbo nucifera HOM05D003074 ORTHO05D002434 8.2e-14 80.5 123 44.7
Manes.15G072100 Manihot esculenta HOM05D003074 ORTHO05D002434 1.1e-13 80.1 119 47.1
TAR626G1667 Trochodendron aralioides HOM05D003074 ORTHO05D002434 1.1e-13 80.1 124 41.1
Atru.chr2.3399 Acer truncatum HOM05D003074 ORTHO05D002434 1.4e-13 79.7 100 49.0
Gohir.A01G079300 Gossypium hirsutum HOM05D003074 ORTHO05D002434 1.4e-13 79.7 109 48.6
Hma1.2p1_1091F.1_g255850 Hydrangea macrophylla HOM05D003074 ORTHO05D002434 1.4e-13 79.7 59 69.5
Prupe.4G212400 Prunus persica HOM05D003074 ORTHO05D002434 2.4e-13 79.0 123 39.8
CSS0019776 Camellia sinensis var. sinensis HOM05D003074 ORTHO05D002434 3.1e-13 78.6 108 47.2
Gohir.D01G066350 Gossypium hirsutum HOM05D003074 ORTHO05D002434 3.1e-13 78.6 90 53.3
MD11G1218800 Malus domestica HOM05D003074 ORTHO05D002434 3.1e-13 78.6 71 60.6
Dinv22264 Davidia involucrata HOM05D003074 ORTHO05D002434 4.1e-13 78.2 84 56.0
Hma1.2p1_1162F.1_g262580 Hydrangea macrophylla HOM05D003074 ORTHO05D002434 4.1e-13 78.2 59 67.8
Hma1.2p1_1222F.1_g268140 Hydrangea macrophylla HOM05D003074 ORTHO05D002434 4.1e-13 78.2 130 43.1
Peaxi162Scf01097g00039 Petunia axillaris HOM05D003074 ORTHO05D002434 4.1e-13 78.2 110 42.7
Phvul.008G267000 Phaseolus vulgaris HOM05D003074 ORTHO05D002434 4.1e-13 78.2 101 51.5
Hma1.2p1_0673F.1_g201330 Hydrangea macrophylla HOM05D003074 ORTHO05D002434 5.3e-13 77.8 127 42.5
RhsimUnG0250800 Rhododendron simsii HOM05D003074 ORTHO05D002434 7.0e-13 77.4 59 69.5
vmacro03644 Vaccinium macrocarpon HOM05D003074 ORTHO05D002434 9.1e-13 77.0 115 42.6
MBI02_g07159_MAGBIO Magnolia biondii HOM05D003074 ORTHO05D002434 2.0e-12 75.9 112 45.5
Aqoxy1G02178 Aquilegia oxysepala HOM05D003074 ORTHO05D002434 2.6e-12 75.5 113 45.1
Oeu007582.1 Olea europaea HOM05D003074 ORTHO05D002434 2.6e-12 75.5 109 43.1
Haze_06793 Corylus avellana HOM05D003074 ORTHO05D002434 5.9e-12 74.3 127 38.6
PGSC0003DMG400031876 Solanum tuberosum HOM05D003074 ORTHO05D002434 5.9e-12 74.3 107 44.9
EL10Ac4g07810 Beta vulgaris HOM05D003074 ORTHO05D002434 7.7e-12 73.9 106 43.4
THA.LOC104817856 Tarenaya hassleriana HOM05D003074 ORTHO05D002434 7.7e-12 73.9 126 40.5
PGSC0003DMG400032292 Solanum tuberosum HOM05D003074 ORTHO05D002434 1.0e-11 73.6 107 44.9
Atru.chr2.3400 Acer truncatum HOM05D003074 ORTHO05D002434 1.3e-11 73.2 86 51.2
ClCG05G014310 Citrullus lanatus HOM05D003074 ORTHO05D002434 1.3e-11 73.2 116 43.1
Cfa000232 Carpinus fangiana HOM05D003074 ORTHO05D002434 2.2e-11 72.4 127 40.9
Sed0026688 Sechium edule HOM05D003074 ORTHO05D002434 2.2e-11 72.4 111 45.0
PGSC0003DMG400001089 Solanum tuberosum HOM05D003074 ORTHO05D002434 2.2e-11 72.4 121 41.3
Aqoxy1G02174 Aquilegia oxysepala HOM05D003074 ORTHO05D002434 5.0e-11 71.2 126 42.1
Dinv13888 Davidia involucrata HOM05D003074 ORTHO05D002434 5.0e-11 71.2 90 48.9
Actinidia35342 Actinidia chinensis HOM05D003074 ORTHO05D002434 6.5e-11 70.9 61 60.7
MSTRG.6917 Avicennia marina HOM05D003074 ORTHO05D002434 6.5e-11 70.9 115 42.6
MBI02_g40709_MAGBIO Magnolia biondii HOM05D003074 ORTHO05D002434 6.5e-11 70.9 122 39.3
PSO541G1700 Papaver somniferum HOM05D003074 ORTHO05D002434 6.5e-11 70.9 127 39.4
MELO3C025367.2 Cucumis melo HOM05D003074 ORTHO05D002434 8.5e-11 70.5 105 42.9
PGSC0003DMG400029820 Solanum tuberosum HOM05D003074 ORTHO05D002434 8.5e-11 70.5 107 45.8
TAR627G0593 Trochodendron aralioides HOM05D003074 ORTHO05D002434 8.5e-11 70.5 57 66.7
Ciclev10009680m.g Citrus clementina HOM05D003074 ORTHO05D002434 1.1e-10 70.1 126 41.3
PSO675G3145 Papaver somniferum HOM05D003074 ORTHO05D002434 1.1e-10 70.1 127 40.9
Lsat_1_v5_gn_5_6000 Lactuca sativa HOM05D003074 ORTHO05D002434 1.5e-10 69.7 60 65.0
MBI18_g22612_MAGBIO Magnolia biondii HOM05D003074 ORTHO05D002434 1.5e-10 69.7 110 41.8
Sabra11G0125400 Salix brachista HOM05D003074 ORTHO05D002434 1.5e-10 69.7 59 66.1
Cc05_g13710 Coffea canephora HOM05D003074 ORTHO05D002434 2.5e-10 68.9 80 53.8
Cc09_g09730 Coffea canephora HOM05D003074 ORTHO05D002434 2.5e-10 68.9 132 39.4
ATR0752G060 Amborella trichopoda HOM05D003074 ORTHO05D002434 3.2e-10 68.6 112 42.0
Sabra16G0289700 Salix brachista HOM05D003074 ORTHO05D002434 3.2e-10 68.6 112 43.8
TAR624G0488 Trochodendron aralioides HOM05D003074 ORTHO05D002434 4.2e-10 68.2 65 55.4
Aqoxy1G02176 Aquilegia oxysepala HOM05D003074 ORTHO05D002434 5.5e-10 67.8 122 40.2
Migut.M01767 Erythranthe guttata HOM05D003074 ORTHO05D002434 5.5e-10 67.8 127 37.8
Oeu063916.1 Olea europaea HOM05D003074 ORTHO05D002434 9.4e-10 67.0 105 45.7
Sed0005061 Sechium edule HOM05D003074 ORTHO05D002434 1.6e-09 66.2 105 41.9
unitig_85.g27325 Utricularia gibba HOM05D003074 ORTHO05D002434 1.6e-09 66.2 102 39.2
Atru.chr10.2213 Acer truncatum HOM05D003074 ORTHO05D002434 2.1e-09 65.9 71 57.7
CDE05G1751 Ceratophyllum demersum HOM05D003074 ORTHO05D002434 2.1e-09 65.9 117 35.0
CDE05G3459 Ceratophyllum demersum HOM05D003074 ORTHO05D002434 2.1e-09 65.9 117 35.0
PGR031G1144 Punica granatum HOM05D003074 ORTHO05D002434 2.1e-09 65.9 112 42.9
arahy.Tifrunner.gnm1.ann1.B0CFPV Arachis hypogaea HOM05D003074 ORTHO05D002434 2.7e-09 65.5 105 44.8
ECA246G0494 Erigeron canadensis HOM05D003074 ORTHO05D002434 2.7e-09 65.5 109 42.2
Potri.011G139400 Populus trichocarpa HOM05D003074 ORTHO05D002434 2.7e-09 65.5 57 61.4
Rhsim13G0146000 Rhododendron simsii HOM05D002761 ORTHO05D003351 2.7e-09 65.5 117 39.3
RhsimUnG0109700 Rhododendron simsii HOM05D003074 ORTHO05D002434 2.7e-09 65.5 117 39.3
CiPaw.09G091000 Carya illinoinensis HOM05D003074 ORTHO05D002434 3.6e-09 65.1 134 38.8
Duzib235G0239 Durio zibethinus HOM05D003074 ORTHO05D002434 3.6e-09 65.1 110 40.0
MBI02_g07158_MAGBIO Magnolia biondii HOM05D003074 ORTHO05D002434 3.6e-09 65.1 59 57.6
Sc03g0008600 Simmondsia chinensis HOM05D003074 ORTHO05D002434 3.6e-09 65.1 110 40.9
Cc09_g01730 Coffea canephora HOM05D003074 ORTHO05D002434 4.7e-09 64.7 127 40.9
Nitab4.5_0009995g0010 Nicotiana tabacum HOM05D003074 ORTHO05D002434 6.1e-09 64.3 93 43.0
RcHm_v2.0_Chr5g0039411 Rosa chinensis HOM05D003074 ORTHO05D002434 8.0e-09 63.9 65 55.4
Sabra11G0125300 Salix brachista HOM05D003074 ORTHO05D002434 8.0e-09 63.9 79 49.4
Sed0010919 Sechium edule HOM05D003074 ORTHO05D002434 8.0e-09 63.9 114 38.6
arahy.Tifrunner.gnm1.ann1.22WBGR Arachis hypogaea HOM05D003074 ORTHO05D002434 1.0e-08 63.5 57 64.9
Eucgr.F03465 Eucalyptus grandis HOM05D003074 ORTHO05D002434 1.0e-08 63.5 129 39.5
Gorai.009G178200 Gossypium raimondii HOM05D003074 ORTHO05D002434 1.0e-08 63.5 121 38.8
PGR004G0474 Punica granatum HOM05D003074 ORTHO05D002434 1.0e-08 63.5 126 37.3
CARHR095990 Cardamine hirsuta HOM05D003074 ORTHO05D002434 1.4e-08 63.2 117 37.6
Sopen03g005540 Solanum pennellii HOM05D037882 ORTHO05D002434 1.4e-08 63.2 125 38.4
Potri.001G435400 Populus trichocarpa HOM05D003074 ORTHO05D002434 1.8e-08 62.8 112 41.1
ClCG03G004770 Citrullus lanatus HOM05D003074 ORTHO05D002434 2.3e-08 62.4 116 37.9
MELO3C002460.2 Cucumis melo HOM05D003074 ORTHO05D002434 2.3e-08 62.4 117 40.2
FvH4_3g22640 Fragaria vesca HOM05D003074 ORTHO05D002434 3.0e-08 62.0 65 52.3
FAN11G2929 Fragaria x ananassa HOM05D003074 ORTHO05D002434 3.0e-08 62.0 65 52.3
QL05p073377 Quercus lobata HOM05D003074 ORTHO05D002434 3.0e-08 62.0 129 40.3
AUR62020443 Chenopodium quinoa HOM05D003074 ORTHO05D002434 4.0e-08 61.6 114 40.4
FAN21G2959 Fragaria x ananassa HOM05D003074 ORTHO05D002434 4.0e-08 61.6 66 51.5
CDE02G3016 Ceratophyllum demersum HOM05D003074 ORTHO05D002434 5.2e-08 61.2 104 41.3
FAN16G0504 Fragaria x ananassa HOM05D003074 ORTHO05D002434 5.2e-08 61.2 65 52.3
FAN25G2410 Fragaria x ananassa HOM05D003074 ORTHO05D002434 5.2e-08 61.2 65 52.3
Zm00001eb151010 Zea mays HOM05D016178 ORTHO05D020926 6.7e-08 60.8 103 38.8
ClCG10G005340 Citrullus lanatus HOM05D003074 ORTHO05D002434 8.8e-08 60.5 102 40.2
AUR62015772 Chenopodium quinoa HOM05D003074 ORTHO05D002434 1.1e-07 60.1 109 41.3
DCAR_022560 Daucus carota HOM05D003074 ORTHO05D002434 1.5e-07 59.7 124 37.9
Thhalv10021814m.g Eutrema salsugineum HOM05D003074 ORTHO05D002434 1.5e-07 59.7 112 38.4
Gohir.A05G169900 Gossypium hirsutum HOM05D003074 ORTHO05D002434 1.5e-07 59.7 122 38.5
EL10Ac4g07811 Beta vulgaris HOM05D003074 ORTHO05D002434 3.3e-07 58.5 116 37.9
Aa31LG6G3910 Aethionema arabicum HOM05D003074 ORTHO05D002434 4.4e-07 58.2 100 38.0
Ah.04g165880 Amaranthus hybridus HOM05D003074 ORTHO05D002434 4.4e-07 58.2 109 40.4
Eucgr.E04065 Eucalyptus grandis HOM05D003074 ORTHO05D002434 4.4e-07 58.2 119 35.3
CsaV3_6G049100 Cucumis sativus L. HOM05D003074 ORTHO05D002434 5.7e-07 57.8 110 36.4
Gohir.D05G173050 Gossypium hirsutum HOM05D003074 ORTHO05D002434 5.7e-07 57.8 121 38.0
Manes.16G007700 Manihot esculenta HOM05D003074 ORTHO05D002434 5.7e-07 57.8 121 34.7
Manes.17G038600 Manihot esculenta HOM05D003074 ORTHO05D002434 5.7e-07 57.8 119 35.3
AUR62020442 Chenopodium quinoa HOM05D003074 ORTHO05D002434 9.7e-07 57.0 112 37.5
Eucgr.E04061 Eucalyptus grandis HOM05D003074 ORTHO05D002434 9.7e-07 57.0 115 39.1
Aqoxy1G02175 Aquilegia oxysepala HOM05D003074 ORTHO05D002434 1.3e-06 56.6 113 35.4
CsaV3_3G005050 Cucumis sativus L. HOM05D003074 ORTHO05D002434 1.7e-06 56.2 55 54.5
TWI38G1232 Tripterygium wilfordii HOM05D003074 ORTHO05D002434 1.7e-06 56.2 132 35.6
Eucgr.E04064 Eucalyptus grandis HOM05D003074 ORTHO05D002434 2.2e-06 55.8 108 38.0
THA.LOC104812967 Tarenaya hassleriana HOM05D003074 ORTHO05D002434 2.2e-06 55.8 128 33.6
Duzib192G0001 Durio zibethinus HOM05D003074 ORTHO05D002434 2.8e-06 55.5 113 38.1
Eucgr.D01318 Eucalyptus grandis HOM05D003074 ORTHO05D002434 2.8e-06 55.5 119 34.5
Eucgr.E04063 Eucalyptus grandis HOM05D003074 ORTHO05D002434 2.8e-06 55.5 115 36.5
BcaC05g28318 Brassica carinata HOM05D010457 ORTHO05D002434 4.8e-06 54.7 118 32.2
C05p44000 Brassica napus HOM05D010457 ORTHO05D002434 4.8e-06 54.7 118 32.2
BolC5t33118H Brassica oleracea HOM05D010457 ORTHO05D002434 4.8e-06 54.7 118 32.2
Thecc.06G219600 Theobroma cacao HOM05D003074 ORTHO05D002434 4.8e-06 54.7 118 36.4
CARHR228720 Cardamine hirsuta HOM05D003074 ORTHO05D002434 6.3e-06 54.3 66 43.9
ClCG01G022040 Citrullus lanatus HOM05D003074 ORTHO05D002434 6.3e-06 54.3 118 36.4
Thhalv10026602m.g Eutrema salsugineum HOM05D003074 ORTHO05D002434 8.2e-06 53.9 68 45.6
Lsat_1_v5_gn_4_60581 Lactuca sativa HOM05D003074 ORTHO05D002434 8.2e-06 53.9 61 49.2


User provided reference genes

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