Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G16583 Trifolium pratense HOM05D005684 ORTHO05D007427 5.2e-142 507.7 252 100.0
Ca_14720_v3 Cicer arietinum L. HOM05D005684 ORTHO05D007427 9.8e-141 503.4 252 99.2
Medtr3g051210 Medicago truncatula HOM05D005684 ORTHO05D007427 2.9e-140 501.9 252 98.8
Lj6g0016495 Lotus japonicus HOM05D005684 ORTHO05D007427 1.3e-137 493.0 250 97.2
Medtr7g033650 Medicago truncatula HOM05D005684 ORTHO05D007427 1.9e-136 489.2 252 96.8
arahy.Tifrunner.gnm1.ann1.A1QMDX Arachis hypogaea HOM05D005684 ORTHO05D007427 1.6e-135 486.1 250 95.2
arahy.Tifrunner.gnm1.ann1.G9AZJ3 Arachis hypogaea HOM05D005684 ORTHO05D007427 1.6e-135 486.1 250 95.2
Lalb_Chr06g0171921 Lupinus albus HOM05D005684 ORTHO05D007427 1.8e-134 482.6 250 94.8
VMungo0540G0423 Vigna mungo HOM05D005684 ORTHO05D007427 3.1e-134 481.9 250 94.4
Phvul.006G040700 Phaseolus vulgaris HOM05D005684 ORTHO05D007427 1.9e-131 472.6 250 92.8
Glyma.08G314600 Glycine max HOM05D005684 ORTHO05D007427 2.1e-130 469.2 250 91.6
CANSAT21G0158 Cannabis sativa HOM05D005684 ORTHO05D007427 2.7e-130 468.8 244 93.0
FvH4_3g22390 Fragaria vesca HOM05D005684 ORTHO05D007427 3.5e-130 468.4 250 91.2
FAN21G0196 Fragaria x ananassa HOM05D005684 ORTHO05D007427 1.0e-129 466.8 250 90.8
Cpa.g.sc97.28 Carica papaya HOM05D005684 ORTHO05D007427 1.3e-129 466.5 250 91.6
Glyma.18G099600 Glycine max HOM05D005684 ORTHO05D007427 1.3e-129 466.5 250 91.6
CiPaw.12G128600 Carya illinoinensis HOM05D005684 ORTHO05D007427 1.7e-129 466.1 244 93.0
RcHm_v2.0_Chr5g0039061 Rosa chinensis HOM05D005684 ORTHO05D007427 1.7e-129 466.1 250 90.8
Manes.03G124800 Manihot esculenta HOM05D005684 ORTHO05D007427 3.0e-129 465.3 249 90.4
ClCG10G005500 Citrullus lanatus HOM05D005684 ORTHO05D007427 1.1e-128 463.4 244 92.2
TWI38G0783 Tripterygium wilfordii HOM05D005684 ORTHO05D007427 1.1e-128 463.4 250 90.4
CsaV3_3G005220 Cucumis sativus L. HOM05D005684 ORTHO05D007427 1.9e-128 462.6 250 90.0
Potri.001G424600 Populus trichocarpa HOM05D005684 ORTHO05D007427 2.5e-128 462.2 244 92.2
Actinidia35335 Actinidia chinensis HOM05D005684 ORTHO05D007427 4.3e-128 461.5 252 89.7
Eucgr.F03458 Eucalyptus grandis HOM05D005684 ORTHO05D007427 4.3e-128 461.5 250 90.4
FAN11G1729 Fragaria x ananassa HOM05D005684 ORTHO05D007427 5.6e-128 461.1 258 88.4
MD03G1205400 Malus domestica HOM05D005684 ORTHO05D007427 5.6e-128 461.1 250 90.4
Manes.15G073300 Manihot esculenta HOM05D005684 ORTHO05D007427 7.3e-128 460.7 249 89.6
Migut.H01837 Erythranthe guttata HOM05D005684 ORTHO05D007427 9.5e-128 460.3 252 88.9
Ciclev10009283m.g Citrus clementina HOM05D005684 ORTHO05D007427 1.2e-127 459.9 250 89.6
Lj1A870G92 Lonicera japonica HOM05D005684 ORTHO05D007427 1.2e-127 459.9 252 90.1
Sed0015085 Sechium edule HOM05D005684 ORTHO05D007427 1.6e-127 459.5 250 89.6
MSTRG.12968 Avicennia marina HOM05D005684 ORTHO05D007427 2.8e-127 458.8 252 88.9
Dinv22273 Davidia involucrata HOM05D005684 ORTHO05D007427 2.8e-127 458.8 252 88.5
MD11G1221300 Malus domestica HOM05D005684 ORTHO05D007427 4.7e-127 458.0 249 90.0
HanXRQChr11g0336331 Helianthus annuus HOM05D005684 ORTHO05D007427 1.1e-126 456.8 252 87.7
Actinidia10725 Actinidia chinensis HOM05D005684 ORTHO05D007427 2.3e-126 455.7 252 88.9
QL09p032912 Quercus lobata HOM05D005684 ORTHO05D007427 2.3e-126 455.7 244 92.6
ECA236G3763 Erigeron canadensis HOM05D005684 ORTHO05D007427 3.1e-126 455.3 252 88.1
Gohir.D01G065700 Gossypium hirsutum HOM05D005684 ORTHO05D007427 3.1e-126 455.3 244 91.0
Gorai.002G087600 Gossypium raimondii HOM05D005684 ORTHO05D007427 3.1e-126 455.3 244 91.0
QL08p011467 Quercus lobata HOM05D005684 ORTHO05D007427 4.0e-126 454.9 244 93.0
Lsat_1_v5_gn_7_109480 Lactuca sativa HOM05D005684 ORTHO05D007427 5.2e-126 454.5 252 87.7
Gohir.A01G078600 Gossypium hirsutum HOM05D005684 ORTHO05D007427 8.9e-126 453.8 244 90.6
PGR031G1629 Punica granatum HOM05D005684 ORTHO05D007427 8.9e-126 453.8 250 88.8
QL08p011589 Quercus lobata HOM05D005684 ORTHO05D007427 1.2e-125 453.4 244 92.6
GSVIVG01037615001 Vitis vinifera HOM05D005684 ORTHO05D007427 1.5e-125 453.0 251 89.6
Peaxi162Scf00387g00210 Petunia axillaris HOM05D005684 ORTHO05D007427 2.0e-125 452.6 252 86.5
Sc16g0006290 Simmondsia chinensis HOM05D005684 ORTHO05D007427 3.4e-125 451.8 251 87.6
Sopen10g002270 Solanum pennellii HOM05D005684 ORTHO05D007427 3.4e-125 451.8 252 86.1
Cc05_g13580 Coffea canephora HOM05D005684 ORTHO05D007427 4.4e-125 451.4 250 88.8
Solyc10g006320.3 Solanum lycopersicum HOM05D005684 ORTHO05D007427 9.9e-125 450.3 252 85.7
PGSC0003DMG400014423 Solanum tuberosum HOM05D005684 ORTHO05D007427 1.3e-124 449.9 252 85.7
Nitab4.5_0005048g0050 Nicotiana tabacum HOM05D005684 ORTHO05D007427 1.7e-124 449.5 252 85.3
Aqoxy7G03212 Aquilegia oxysepala HOM05D005684 ORTHO05D007427 2.2e-124 449.1 251 88.0
Thhalv10014489m.g Eutrema salsugineum HOM05D005684 ORTHO05D007427 2.2e-124 449.1 250 86.0
Duzib170G0103 Durio zibethinus HOM05D005684 ORTHO05D007427 4.9e-124 448.0 244 89.8
PSO170G3986 Papaver somniferum HOM05D005684 ORTHO05D007427 6.4e-124 447.6 244 90.6
Thhalv10026070m.g Eutrema salsugineum HOM05D005684 ORTHO05D007427 1.1e-123 446.8 250 85.2
CARHR234690 Cardamine hirsuta HOM05D005684 ORTHO05D007427 1.4e-123 446.4 250 85.2
Sp7g25020 Schrenkiella parvula HOM05D005684 ORTHO05D007427 3.2e-123 445.3 250 85.6
Aa31LG3G10790 Aethionema arabicum HOM05D005684 ORTHO05D007427 4.1e-123 444.9 255 84.3
ATR0749G094 Amborella trichopoda HOM05D005684 ORTHO05D007427 4.1e-123 444.9 251 86.9
PSO017G1132 Papaver somniferum HOM05D005684 ORTHO05D007427 4.1e-123 444.9 244 89.8
TAR383G0098 Trochodendron aralioides HOM05D005684 ORTHO05D007427 4.1e-123 444.9 252 87.7
Carub.0007s1380 Capsella rubella HOM05D005684 ORTHO05D007427 5.4e-123 444.5 249 85.5
THA.LOC104817661 Tarenaya hassleriana HOM05D005684 ORTHO05D007427 5.4e-123 444.5 250 84.8
AT4G27040 Arabidopsis thaliana HOM05D005684 ORTHO05D007427 9.2e-123 443.7 250 85.2
BcaC06g32714 Brassica carinata HOM05D005684 ORTHO05D007427 9.2e-123 443.7 250 84.8
BolC7t46008H Brassica oleracea HOM05D005684 ORTHO05D007427 9.2e-123 443.7 250 84.8
A03p57030 Brassica napus HOM05D005684 ORTHO05D007427 1.6e-122 443.0 250 84.8
C07p55040 Brassica napus HOM05D005684 ORTHO05D007427 1.6e-122 443.0 250 84.8
BraA03t14772Z Brassica rapa HOM05D005684 ORTHO05D007427 2.7e-122 442.2 250 84.4
COL.COLO4_09643 Corchorus olitorius HOM05D005684 ORTHO05D007427 3.5e-122 441.8 250 88.0
AL7G25790 Arabidopsis lyrata HOM05D005684 ORTHO05D007427 4.6e-122 441.4 250 84.4
vmacro09729 Vaccinium macrocarpon HOM05D005684 ORTHO05D007427 4.6e-122 441.4 272 81.6
A01p18200 Brassica napus HOM05D005684 ORTHO05D007427 6.0e-122 441.0 250 84.4
BraA01t01775Z Brassica rapa HOM05D005684 ORTHO05D007427 6.0e-122 441.0 250 84.4
Cfa020373 Carpinus fangiana HOM05D005684 ORTHO05D007427 3.0e-121 438.7 228 93.4
Nn8g40268 Nelumbo nucifera HOM05D005684 ORTHO05D007427 6.6e-121 437.6 251 84.9
MBI15_g26086_MAGBIO Magnolia biondii HOM05D005684 ORTHO05D007427 4.3e-120 434.9 247 87.0
SGA_v2.0_scaffold9G05066 Striga asiatica HOM05D005684 ORTHO05D007427 4.3e-120 434.9 271 81.2
BcaC09g50622 Brassica carinata HOM05D005684 ORTHO05D007427 5.6e-120 434.5 250 83.6
Sabra16G0288400 Salix brachista HOM05D005684 ORTHO05D007427 5.6e-120 434.5 291 77.3
Haze_09656 Corylus avellana HOM05D005684 ORTHO05D007427 1.4e-118 429.9 244 88.5
Aa31LG5G10350 Aethionema arabicum HOM05D005684 ORTHO05D007427 6.8e-118 427.6 297 71.7
RhsimUnG0251500 Rhododendron simsii HOM05D001404 ORTHO05D002309 8.9e-118 427.2 233 90.1
SEGI_16862 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 2.9e-116 422.2 247 83.4
CAN.G1781.5 Capsicum annuum HOM05D005684 ORTHO05D007427 6.4e-116 421.0 236 85.2
Os09g0529700 Oryza sativa ssp. japonica HOM05D005684 ORTHO05D007427 1.6e-114 416.4 250 80.4
Os11g0670700 Oryza sativa ssp. japonica HOM05D005684 ORTHO05D007427 4.3e-112 408.3 250 78.8
Nitab4.5_0001393g0150 Nicotiana tabacum HOM05D005684 ORTHO05D007427 7.3e-112 407.5 252 79.0
Oeu062595.4 Olea europaea HOM05D005684 ORTHO05D007427 2.4e-110 402.5 358 60.9
Hma1.2p1_0673F.1_g201210 Hydrangea macrophylla HOM05D005684 ORTHO05D007427 4.0e-110 401.7 257 79.8
SMO232G0102 Selaginella moellendorffii HOM05D005684 ORTHO05D007427 5.4e-107 391.3 244 75.8
BolC1t02253H Brassica oleracea HOM05D005684 ORTHO05D007427 7.1e-107 391.0 222 82.9
CDE08G1370 Ceratophyllum demersum HOM05D005684 ORTHO05D007427 4.3e-104 381.7 243 77.4
Prupe.4G210400 Prunus persica HOM05D005684 ORTHO05D007427 1.3e-103 380.2 250 77.6
Pp3c10_13560 Physcomitrium patens HOM05D005684 ORTHO05D007427 1.4e-102 376.7 241 76.3
HPP92_001822 Vanilla planifolia HOM05D005684 ORTHO05D007427 2.4e-102 375.9 212 87.3
Mapoly0007s0150 Marchantia polymorpha HOM05D005684 ORTHO05D007427 9.0e-102 374.0 242 73.1
AUR62020473 Chenopodium quinoa HOM05D005684 ORTHO05D007427 1.7e-100 369.8 251 74.1
Psat5g180640 Pisum sativum HOM05D005684 ORTHO05D007427 1.4e-99 366.7 183 96.7
BolC1t02251H Brassica oleracea HOM05D005684 ORTHO05D007427 4.2e-99 365.2 237 75.5
EL10Ac4g07848 Beta vulgaris HOM05D005684 ORTHO05D007427 1.8e-97 359.8 251 73.7
FAN16G3416 Fragaria x ananassa HOM05D005684 ORTHO05D007427 3.8e-92 342.0 194 88.7
SEGI_13452 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 4.2e-91 338.6 206 82.5
CBR_g28043 Chara braunii HOM05D005684 ORTHO05D007427 8.7e-89 330.9 238 67.6
AUR62015738 Chenopodium quinoa HOM05D005684 ORTHO05D007427 6.9e-86 321.2 325 55.4
Zm00001eb103240 Zea mays HOM05D005684 ORTHO05D007427 2.3e-81 306.2 187 81.8
Ah.06g186400 Amaranthus hybridus HOM05D005684 ORTHO05D007427 1.8e-78 296.6 209 72.2
C01p23200 Brassica napus HOM05D005684 ORTHO05D007427 2.5e-75 286.2 184 75.0
MELO3C032233.2 Cucumis melo HOM05D005684 ORTHO05D007427 1.6e-74 283.5 151 92.7
Cre17.g706650 Chlamydomonas reinhardtii HOM05D005684 ORTHO05D007427 2.0e-72 276.6 240 54.6
Duzib213G0140 Durio zibethinus HOM05D005684 ORTHO05D007427 3.4e-69 265.8 211 68.2
MCO16G427 Micromonas commoda HOM05D005684 ORTHO05D007427 7.9e-66 254.6 250 50.8
AagrBONN_evm.TU.Sc2ySwM_228.646 Anthoceros agrestis HOM05D005684 ORTHO05D007427 2.6e-64 249.6 152 78.3
CAN.G915.10 Capsicum annuum HOM05D005684 ORTHO05D007427 1.2e-61 240.7 197 62.4
Thecc.07G042900 Theobroma cacao HOM05D005684 ORTHO05D007427 5.0e-60 235.3 250 55.2
TAR626G1586 Trochodendron aralioides HOM05D005684 ORTHO05D007427 4.5e-53 212.2 119 86.6
TAR626G0395 Trochodendron aralioides HOM05D005684 ORTHO05D007427 1.8e-49 200.3 99 98.0
GSVIVG01037619001 Vitis vinifera HOM05D005684 ORTHO05D007427 4.0e-49 199.1 120 80.8
PRCOL_00005955 Prasinoderma coloniale HOM05D005684 ORTHO05D007427 3.7e-47 192.6 249 45.0
MELO3C031910.2 Cucumis melo HOM05D005684 ORTHO05D007427 4.1e-46 189.1 100 88.0
PGR142G1953 Punica granatum HOM05D005684 ORTHO05D007427 1.0e-44 184.5 100 86.0
C01p23160 Brassica napus HOM05D005684 ORTHO05D007427 1.2e-40 171.0 115 72.2
Cfa026637 Carpinus fangiana HOM05D005684 ORTHO05D007427 4.4e-40 169.1 257 36.2
Prupe.5G052500 Prunus persica HOM05D005684 ORTHO05D007427 2.2e-39 166.8 99 81.8
Dinv40739 Davidia involucrata HOM05D005684 ORTHO05D007427 1.6e-37 160.6 158 60.1
CAN.G1192.5 Capsicum annuum HOM05D005684 ORTHO05D000076 1.0e-28 131.3 124 60.5
HanXRQChr09g0268041 Helianthus annuus HOM05D005684 ORTHO05D007427 1.6e-18 97.4 103 50.5
SEGI_35638 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 4.7e-18 95.9 64 67.2
Actinidia05107 Actinidia chinensis HOM05D006458 ORTHO05D008433 6.8e-17 92.0 137 46.0
AagrBONN_evm.TU.Sc2ySwM_340.2023 Anthoceros agrestis HOM05D005684 ORTHO05D007427 5.4e-14 82.4 55 72.7
Hma1.2p1_0212F.1_g090110 Hydrangea macrophylla HOM05D005684 ORTHO05D048316 5.4e-14 82.4 44 81.8
SEGI_36060 Sequoiadendron giganteum HOM05D005684 ORTHO05D383802 1.9e-11 73.9 56 67.9
GSVIVG01037618001 Vitis vinifera HOM05D005684 ORTHO05D048316 5.2e-09 65.9 30 93.3
Zm00001eb057030 Zea mays HOM05D000424 ORTHO05D000355 4.4e-08 62.8 55 63.6


User provided reference genes

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