Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G16505 Trifolium pratense HOM05D004436 ORTHO05D005179 2.8e-123 445.3 224 100.0
Medtr7g104810 Medicago truncatula HOM05D004436 ORTHO05D005179 2.7e-89 332.4 223 72.6
Psat1g144000 Pisum sativum HOM05D004436 ORTHO05D005179 1.1e-87 327.0 224 72.8
Medtr2g037460 Medicago truncatula HOM05D004436 ORTHO05D005179 4.7e-86 321.6 217 73.3
Medtr2g037880 Medicago truncatula HOM05D004436 ORTHO05D005179 6.1e-86 321.2 217 72.4
TPR.G13789 Trifolium pratense HOM05D004436 ORTHO05D005179 3.7e-83 312.0 225 72.4
Ca_02096_v3 Cicer arietinum L. HOM05D004436 ORTHO05D005179 2.0e-81 306.2 219 70.3
Glyma.15G165300 Glycine max HOM05D004436 ORTHO05D005179 2.7e-81 305.8 216 69.0
Lj6g0016044 Lotus japonicus HOM05D004436 ORTHO05D005179 2.7e-73 279.3 218 61.9
Lj6g0018808 Lotus japonicus HOM05D004436 ORTHO05D005179 7.3e-71 271.2 219 61.2
Phvul.009G236700 Phaseolus vulgaris HOM05D004436 ORTHO05D005179 4.7e-70 268.5 219 61.6
Lalb_Chr08g0233321 Lupinus albus HOM05D004436 ORTHO05D005179 2.6e-68 262.7 221 60.6
Eucgr.F03167 Eucalyptus grandis HOM05D004436 ORTHO05D005179 3.5e-65 252.3 218 54.1
arahy.Tifrunner.gnm1.ann1.0TY6IG Arachis hypogaea HOM05D004436 ORTHO05D005179 2.3e-64 249.6 219 59.8
arahy.Tifrunner.gnm1.ann1.4RDH3B Arachis hypogaea HOM05D004436 ORTHO05D005179 8.6e-64 247.7 219 59.8
Prupe.3G044800 Prunus persica HOM05D004436 ORTHO05D005179 1.8e-61 240.0 221 54.3
CiPaw.01G221800 Carya illinoinensis HOM05D004436 ORTHO05D005179 2.6e-60 236.1 216 54.6
GSVIVG01016817001 Vitis vinifera HOM05D004436 ORTHO05D005179 2.6e-60 236.1 219 54.8
CsaV3_7G034640 Cucumis sativus L. HOM05D004436 ORTHO05D005179 3.4e-60 235.7 217 55.3
MELO3C024372.2 Cucumis melo HOM05D004436 ORTHO05D005179 4.4e-60 235.3 217 54.4
Haze_15997 Corylus avellana HOM05D004436 ORTHO05D005179 7.6e-60 234.6 218 54.1
Sed0020704 Sechium edule HOM05D004436 ORTHO05D005179 1.3e-59 233.8 217 55.8
CiPaw.05G181900 Carya illinoinensis HOM05D004436 ORTHO05D005179 2.2e-59 233.0 216 54.2
Manes.11G023100 Manihot esculenta HOM05D004436 ORTHO05D005179 3.2e-58 229.2 218 51.8
Cpa.g.sc25.86 Carica papaya HOM05D004436 ORTHO05D005179 1.6e-57 226.9 216 52.8
ClCG09G000840 Citrullus lanatus HOM05D004436 ORTHO05D005179 2.1e-57 226.5 217 53.5
MD09G1187900 Malus domestica HOM05D004436 ORTHO05D005179 6.0e-57 224.9 225 52.0
THA.LOC104804933 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 1.0e-56 224.2 216 51.9
Potri.001G198600 Populus trichocarpa HOM05D004436 ORTHO05D005179 8.6e-56 221.1 217 50.7
Manes.04G142200 Manihot esculenta HOM05D004436 ORTHO05D005179 2.5e-55 219.5 218 51.4
Sed0007780 Sechium edule HOM05D004436 ORTHO05D005179 4.3e-55 218.8 216 51.9
vmacro22224 Vaccinium macrocarpon HOM05D004436 ORTHO05D005179 4.3e-55 218.8 218 49.1
CAN.G540.4 Capsicum annuum HOM05D004436 ORTHO05D005179 1.2e-54 217.2 218 49.1
RcHm_v2.0_Chr2g0144531 Rosa chinensis HOM05D004436 ORTHO05D005179 2.1e-54 216.5 203 54.2
Ciclev10025597m.g Citrus clementina HOM05D004436 ORTHO05D005179 2.8e-54 216.1 216 48.1
PGR119G1065 Punica granatum HOM05D004436 ORTHO05D005179 2.8e-54 216.1 218 48.6
Solyc06g053330.4 Solanum lycopersicum HOM05D004436 ORTHO05D005179 2.8e-54 216.1 218 48.6
Dinv30366 Davidia involucrata HOM05D004436 ORTHO05D005179 3.6e-54 215.7 218 49.1
Sopen06g018390 Solanum pennellii HOM05D004436 ORTHO05D005179 3.6e-54 215.7 218 48.6
Dinv03512 Davidia involucrata HOM05D004436 ORTHO05D005179 6.2e-54 214.9 218 49.1
Rhsim08G0236100 Rhododendron simsii HOM05D004436 ORTHO05D005179 1.1e-53 214.2 219 49.8
Aa31LG8G1130 Aethionema arabicum HOM05D004436 ORTHO05D005179 1.4e-53 213.8 216 48.1
HanXRQChr10g0312341 Helianthus annuus HOM05D004436 ORTHO05D005179 1.4e-53 213.8 207 48.8
FAN09G2135 Fragaria x ananassa HOM05D004436 ORTHO05D005179 2.4e-53 213.0 203 52.2
Thecc.03G227200 Theobroma cacao HOM05D004436 ORTHO05D005179 2.4e-53 213.0 222 50.0
FAN02G3564 Fragaria x ananassa HOM05D004436 ORTHO05D005179 3.1e-53 212.6 203 52.2
FvH4_6g34180 Fragaria vesca HOM05D004436 ORTHO05D005179 4.0e-53 212.2 203 52.7
CANSAT56G1493 Cannabis sativa HOM05D004436 ORTHO05D005179 5.2e-53 211.8 217 46.5
FAN05G5343 Fragaria x ananassa HOM05D004436 ORTHO05D005179 6.8e-53 211.5 203 51.7
TWI23G0436 Tripterygium wilfordii HOM05D004436 ORTHO05D005179 6.8e-53 211.5 216 50.0
CSS0015890 Camellia sinensis var. sinensis HOM05D004436 ORTHO05D005179 8.9e-53 211.1 218 48.2
PGSC0003DMG400016304 Solanum tuberosum HOM05D004436 ORTHO05D005179 8.9e-53 211.1 218 47.7
BcaC09g48383 Brassica carinata HOM05D004436 ORTHO05D005179 2.0e-52 209.9 222 47.3
A01p39710 Brassica napus HOM05D004436 ORTHO05D005179 2.0e-52 209.9 220 47.3
C01p50660 Brassica napus HOM05D004436 ORTHO05D005179 2.0e-52 209.9 222 47.3
BolC1t05015H Brassica oleracea HOM05D004436 ORTHO05D005179 2.0e-52 209.9 222 47.3
BraA01t04010Z Brassica rapa HOM05D004436 ORTHO05D005179 2.0e-52 209.9 220 47.3
Sp3g12180 Schrenkiella parvula HOM05D004436 ORTHO05D005179 2.6e-52 209.5 216 48.6
Gorai.003G182300 Gossypium raimondii HOM05D004436 ORTHO05D005179 3.4e-52 209.1 220 49.5
Gohir.D03G171700 Gossypium hirsutum HOM05D004436 ORTHO05D005179 4.4e-52 208.8 220 49.5
Lsat_1_v5_gn_5_135221 Lactuca sativa HOM05D004436 ORTHO05D005179 4.4e-52 208.8 210 48.1
Sabra01G0155800 Salix brachista HOM05D004436 ORTHO05D005179 5.8e-52 208.4 229 47.6
ECA234G4408 Erigeron canadensis HOM05D004436 ORTHO05D005179 7.6e-52 208.0 213 46.9
Actinidia32167 Actinidia chinensis HOM05D004436 ORTHO05D005179 1.3e-51 207.2 218 47.7
Thhalv10020760m.g Eutrema salsugineum HOM05D004436 ORTHO05D005179 1.3e-51 207.2 216 49.1
Duzib205G0267 Durio zibethinus HOM05D004436 ORTHO05D005179 1.7e-51 206.8 222 48.6
Nitab4.5_0000035g0090 Nicotiana tabacum HOM05D004436 ORTHO05D005179 2.2e-51 206.5 218 48.2
Hma1.2p1_0496F.1_g166100 Hydrangea macrophylla HOM05D004436 ORTHO05D005179 3.8e-51 205.7 218 48.2
Lj5A40G74 Lonicera japonica HOM05D004436 ORTHO05D005179 3.8e-51 205.7 219 48.4
Gohir.A03G000500 Gossypium hirsutum HOM05D004436 ORTHO05D005179 4.9e-51 205.3 220 49.1
COL.COLO4_17027 Corchorus olitorius HOM05D004436 ORTHO05D005179 1.1e-50 204.1 224 46.9
Sc12g0010440 Simmondsia chinensis HOM05D004436 ORTHO05D005179 1.1e-50 204.1 217 47.0
Oeu044709.1 Olea europaea HOM05D004436 ORTHO05D005179 1.4e-50 203.8 217 48.8
MSTRG.22562 Avicennia marina HOM05D004436 ORTHO05D005179 3.2e-50 202.6 219 45.7
Nitab4.5_0012713g0010 Nicotiana tabacum HOM05D004436 ORTHO05D005179 4.2e-50 202.2 218 47.2
Cc04_g01610 Coffea canephora HOM05D004436 ORTHO05D005179 5.4e-50 201.8 219 48.9
AL3G26120 Arabidopsis lyrata HOM05D004436 ORTHO05D005179 7.1e-50 201.4 220 45.0
Peaxi162Scf00943g00014 Petunia axillaris HOM05D004436 ORTHO05D005179 9.3e-50 201.1 218 45.9
Oeu047041.1 Olea europaea HOM05D004436 ORTHO05D005179 1.6e-49 200.3 210 50.0
Peaxi162Scf00647g00219 Petunia axillaris HOM05D004436 ORTHO05D005179 2.7e-49 199.5 210 46.7
Ah.07g197300 Amaranthus hybridus HOM05D004436 ORTHO05D005179 4.6e-49 198.7 217 46.1
COL.COLO4_30482 Corchorus olitorius HOM05D004436 ORTHO05D005179 6.0e-49 198.4 225 46.2
TAR375G0086 Trochodendron aralioides HOM05D004436 ORTHO05D005179 6.0e-49 198.4 218 44.0
Nitab4.5_0004287g0020 Nicotiana tabacum HOM05D004436 ORTHO05D005179 7.8e-49 198.0 197 49.7
CARHR088750 Cardamine hirsuta HOM05D004436 ORTHO05D005179 1.0e-48 197.6 224 43.8
Rhsim10G0150900 Rhododendron simsii HOM05D004436 ORTHO05D005179 1.0e-48 197.6 218 45.0
EL10Ac7g16380 Beta vulgaris HOM05D004436 ORTHO05D005179 3.9e-48 195.7 217 46.1
FvH4_2g14600 Fragaria vesca HOM05D004436 ORTHO05D005179 3.9e-48 195.7 217 49.8
Carub.0003s1351 Capsella rubella HOM05D004436 ORTHO05D005179 5.1e-48 195.3 220 45.0
FAN14G2695 Fragaria x ananassa HOM05D004436 ORTHO05D005179 6.6e-48 194.9 239 44.8
RcHm_v2.0_Chr2g0166351 Rosa chinensis HOM05D004436 ORTHO05D005179 8.7e-48 194.5 213 49.8
FAN24G2018 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.5e-47 193.7 218 50.5
Hund20819 Selenicereus undatus HOM05D004436 ORTHO05D005179 1.9e-47 193.4 217 45.2
FAN26G0630 Fragaria x ananassa HOM05D004436 ORTHO05D005179 2.5e-47 193.0 203 48.3
AT3G13940 Arabidopsis thaliana HOM05D004436 ORTHO05D005179 3.3e-47 192.6 220 44.5
CSS0033207 Camellia sinensis var. sinensis HOM05D004436 ORTHO05D005179 3.3e-47 192.6 218 46.3
SGA_v2.0_scaffold68G22895 Striga asiatica HOM05D004436 ORTHO05D005179 4.3e-47 192.2 210 43.3
Migut.D00948 Erythranthe guttata HOM05D004436 ORTHO05D005179 7.3e-47 191.4 220 47.3
BcaB04g20967 Brassica carinata HOM05D004436 ORTHO05D005179 2.1e-46 189.9 222 45.0
unitig_26.g9010 Utricularia gibba HOM05D000572 ORTHO05D002399 4.8e-46 188.7 223 43.9
Aqoxy2G00706 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 8.1e-46 188.0 218 45.4
FvH4_6g47280 Fragaria vesca HOM05D004436 ORTHO05D005179 1.4e-45 187.2 226 46.0
EL10Ac7g16378 Beta vulgaris HOM05D004436 ORTHO05D005179 1.8e-45 186.8 209 45.5
Atru.chr1.3808 Acer truncatum HOM05D004436 ORTHO05D005179 1.7e-43 180.3 188 47.3
AUR62009860 Chenopodium quinoa HOM05D004436 ORTHO05D005179 4.2e-42 175.6 218 39.9
DCAR_026403 Daucus carota HOM05D004436 ORTHO05D005179 2.1e-41 173.3 218 41.3
AUR62001510 Chenopodium quinoa HOM05D004436 ORTHO05D005179 7.9e-41 171.4 218 39.0
Peaxi162Scf00060g02815 Petunia axillaris HOM05D004436 ORTHO05D005179 2.3e-40 169.9 210 42.9
Ca_27339_v3 Cicer arietinum L. HOM05D004436 ORTHO05D005179 1.1e-39 167.5 119 70.6
Carub.0003s3547 Capsella rubella HOM05D004436 ORTHO05D005179 7.4e-39 164.9 210 44.3
CDE07G0038 Ceratophyllum demersum HOM05D004436 ORTHO05D005179 8.1e-38 161.4 235 38.3
QL05p009436 Quercus lobata HOM05D004436 ORTHO05D005179 3.4e-36 156.0 133 60.2
PSO724G1089 Papaver somniferum HOM05D004436 ORTHO05D005179 1.6e-33 147.1 229 35.8
Ah.08g216510 Amaranthus hybridus HOM05D004436 ORTHO05D005179 2.1e-33 146.7 188 43.6
PSO135G0558 Papaver somniferum HOM05D004436 ORTHO05D005179 4.6e-33 145.6 229 35.4
HPP92_009424 Vanilla planifolia HOM05D004436 ORTHO05D005179 4.6e-33 145.6 226 38.9
DCAR_023423 Daucus carota HOM05D004436 ORTHO05D005179 7.9e-33 144.8 210 38.1
ATR0762G049 Amborella trichopoda HOM05D004436 ORTHO05D005179 1.1e-31 141.0 239 36.4
Nn6g35749 Nelumbo nucifera HOM05D004436 ORTHO05D005179 1.5e-31 140.6 133 52.6
FAN14G5104 Fragaria x ananassa HOM05D002326 ORTHO05D005179 1.9e-31 140.2 215 38.6
MD17G1172300 Malus domestica HOM05D004436 ORTHO05D005179 9.6e-31 137.9 133 48.1
Aqoxy7G00272 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 1.3e-30 137.5 206 37.4
Aqoxy2G02914 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 5.8e-28 128.6 135 48.9
FAN27G1625 Fragaria x ananassa HOM05D004436 ORTHO05D005179 2.9e-27 126.3 153 48.4
Os11g0615100 Oryza sativa ssp. japonica HOM05D004436 ORTHO05D005179 1.9e-26 123.6 225 35.6
Zm00001eb166800 Zea mays HOM05D004436 ORTHO05D005179 3.2e-26 122.9 211 36.0
SEGI_28110 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 4.2e-26 122.5 245 33.1
Actinidia21779 Actinidia chinensis HOM05D004436 ORTHO05D005179 9.3e-26 121.3 194 36.6
FAN20G3048 Fragaria x ananassa HOM05D004436 ORTHO05D005179 2.8e-22 109.8 217 34.1
Mapoly0063s0055 Marchantia polymorpha HOM05D004436 ORTHO05D005179 3.7e-22 109.4 247 31.6
Oeu004353.1 Olea europaea HOM05D004436 ORTHO05D005179 2.4e-21 106.7 107 48.6
Haze_06394 Corylus avellana HOM05D004436 ORTHO05D005179 1.5e-20 104.0 159 44.7
AagrBONN_evm.TU.Sc2ySwM_368.2707 Anthoceros agrestis HOM05D004436 ORTHO05D005179 4.5e-20 102.4 244 32.0
AL1G64440 Arabidopsis lyrata HOM05D004436 ORTHO05D005179 7.6e-20 101.7 160 36.9
FAN15G1241 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.1e-18 97.8 105 50.5
PGSC0003DMG400002436 Solanum tuberosum HOM05D004436 ORTHO05D005179 2.1e-17 93.6 142 38.0
Pp3c8_24340 Physcomitrium patens HOM05D004436 ORTHO05D005179 2.7e-17 93.2 240 28.3
Dinv21190 Davidia involucrata HOM05D004436 ORTHO05D005179 3.6e-17 92.8 111 46.8
AUR62000997 Chenopodium quinoa HOM05D004436 ORTHO05D005179 3.9e-16 89.4 136 40.4
SEGI_22335 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 3.9e-08 62.8 109 36.7
THA.LOC104822769 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 3.9e-08 62.8 55 50.9
Ca_02098_v3 Cicer arietinum L. HOM05D000001 ORTHO05D000003 7.4e-07 58.5 87 42.5
CBR_g45967 Chara braunii HOM05D004436 ORTHO05D005179 9.7e-07 58.2 296 24.0
FAN09G3702 Fragaria x ananassa HOM05D002326 ORTHO05D005179 2.8e-06 56.6 175 28.0
Peaxi162Scf01131g00007 Petunia axillaris HOM05D004436 ORTHO05D005179 4.8e-06 55.8 81 39.5


User provided reference genes

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