Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G16504 Trifolium pratense HOM05D000499 ORTHO05D036950 1.4e-36 156.0 92 100.0
Ca_00338_v3 Cicer arietinum L. HOM05D000499 ORTHO05D002036 8.0e-32 140.2 92 87.0
Psat1g204760 Pisum sativum HOM05D000499 ORTHO05D002036 3.1e-28 128.3 92 77.2
Medtr2g013690 Medicago truncatula HOM05D000499 ORTHO05D002036 8.5e-26 120.2 92 73.9
Glyma.13G238800 Glycine max HOM05D000499 ORTHO05D002036 1.7e-21 105.9 93 65.6
Glyma.15G074500 Glycine max HOM05D000499 ORTHO05D002036 4.8e-21 104.4 93 65.6
Medtr4g088785 Medicago truncatula HOM05D000499 ORTHO05D002036 4.8e-21 104.4 92 58.7
Ca_18546_v3 Cicer arietinum L. HOM05D000499 ORTHO05D002036 4.1e-20 101.3 92 57.6
Ca_29972_v3 Cicer arietinum L. HOM05D000499 ORTHO05D002036 4.1e-20 101.3 92 57.6
Phvul.002G228900 Phaseolus vulgaris HOM05D000499 ORTHO05D002036 4.1e-20 101.3 92 59.8
arahy.Tifrunner.gnm1.ann1.1B8730 Arachis hypogaea HOM05D000499 ORTHO05D002036 7.0e-20 100.5 89 57.3
arahy.Tifrunner.gnm1.ann1.TCFV76 Arachis hypogaea HOM05D000499 ORTHO05D002036 7.0e-20 100.5 89 57.3
Glyma.13G179300 Glycine max HOM05D000499 ORTHO05D002036 1.2e-19 99.8 92 71.7
Lj4g0005805 Lotus japonicus HOM05D000499 ORTHO05D002036 1.6e-19 99.4 92 67.4
Lalb_Chr18g0059611 Lupinus albus HOM05D000499 ORTHO05D002036 2.7e-19 98.6 92 64.1
Glyma.07G197000 Glycine max HOM05D000499 ORTHO05D002036 3.5e-19 98.2 92 67.4
Lalb_Chr09g0327651 Lupinus albus HOM05D000499 ORTHO05D002036 2.9e-18 95.1 93 67.7
VMungo0251G2639 Vigna mungo HOM05D000499 ORTHO05D002036 8.5e-18 93.6 92 60.9
Phvul.006G185100 Phaseolus vulgaris HOM05D000499 ORTHO05D002036 1.9e-17 92.4 93 58.1
VMungo0540G0864 Vigna mungo HOM05D000499 ORTHO05D002036 5.5e-17 90.9 89 56.2
Lalb_Chr16g0383781 Lupinus albus HOM05D000499 ORTHO05D002036 7.2e-17 90.5 93 55.9
Lalb_Chr20g0121871 Lupinus albus HOM05D000499 ORTHO05D002036 1.2e-16 89.7 92 70.7
Prupe.4G048000 Prunus persica HOM05D000499 ORTHO05D002036 1.6e-16 89.4 101 65.3
arahy.Tifrunner.gnm1.ann1.3F75VG Arachis hypogaea HOM05D000499 ORTHO05D002036 6.8e-15 84.0 89 50.6
TWI63G0171 Tripterygium wilfordii HOM05D000499 ORTHO05D002036 6.8e-15 84.0 91 54.9
MD10G1293800 Malus domestica HOM05D000499 ORTHO05D002036 1.2e-14 83.2 102 61.8
Dinv07563 Davidia involucrata HOM05D000499 ORTHO05D002036 4.4e-14 81.3 93 49.5
QL05p040593 Quercus lobata HOM05D000499 ORTHO05D002036 4.4e-14 81.3 110 52.7
TWI38G1982 Tripterygium wilfordii HOM05D000499 ORTHO05D002036 5.7e-14 80.9 85 55.3
MD05G1338900 Malus domestica HOM05D000499 ORTHO05D002036 4.9e-13 77.8 103 46.6
Sed0016796 Sechium edule HOM05D000499 ORTHO05D002036 6.3e-13 77.4 87 50.6
Manes.16G028300 Manihot esculenta HOM05D000499 ORTHO05D002036 8.3e-13 77.0 93 48.4
Sed0021467 Sechium edule HOM05D000499 ORTHO05D002036 8.3e-13 77.0 93 58.1
Peaxi162Scf00461g00310 Petunia axillaris HOM05D000499 ORTHO05D002036 1.1e-12 76.6 94 51.1
Potri.004G044100 Populus trichocarpa HOM05D000499 ORTHO05D002036 1.1e-12 76.6 101 53.5
PSO675G0580 Papaver somniferum HOM05D000499 ORTHO05D002036 1.8e-12 75.9 87 44.8
TPR.G12072 Trifolium pratense HOM05D000499 ORTHO05D002036 2.4e-12 75.5 92 62.0
TAR625G0107 Trochodendron aralioides HOM05D000499 ORTHO05D002036 2.4e-12 75.5 88 46.6
Sabra04G0027300 Salix brachista HOM05D000499 ORTHO05D002036 3.1e-12 75.1 101 55.4
Cpa.g.sc27.31 Carica papaya HOM05D000499 ORTHO05D002036 4.1e-12 74.7 98 44.9
Thecc.06G186600 Theobroma cacao HOM05D000499 ORTHO05D002036 4.1e-12 74.7 86 51.2
CsaV3_1G012320 Cucumis sativus L. HOM05D000499 ORTHO05D002036 5.4e-12 74.3 94 47.9
DCAR_028066 Daucus carota HOM05D000499 ORTHO05D002036 5.4e-12 74.3 93 49.5
TAR629G2874 Trochodendron aralioides HOM05D000499 ORTHO05D002036 5.4e-12 74.3 88 46.6
CiPaw.09G060500 Carya illinoinensis HOM05D000499 ORTHO05D002036 7.0e-12 73.9 101 58.4
THA.LOC104810473 Tarenaya hassleriana HOM05D000499 ORTHO05D002036 7.0e-12 73.9 95 48.4
TWI38G1287 Tripterygium wilfordii HOM05D000499 ORTHO05D002036 7.0e-12 73.9 89 53.9
GSVIVG01006163001 Vitis vinifera HOM05D000499 ORTHO05D036950 7.0e-12 73.9 98 44.9
PSO541G4012 Papaver somniferum HOM05D000499 ORTHO05D002036 1.2e-11 73.2 87 43.7
Rhsim06G0199100 Rhododendron simsii HOM05D000499 ORTHO05D002036 1.2e-11 73.2 87 44.8
Solyc03g006430.3 Solanum lycopersicum HOM05D000499 ORTHO05D002036 1.2e-11 73.2 102 50.0
Sopen03g002440 Solanum pennellii HOM05D000499 ORTHO05D002036 1.2e-11 73.2 101 46.5
Actinidia39463 Actinidia chinensis HOM05D000499 ORTHO05D002036 1.6e-11 72.8 97 45.4
PGSC0003DMG400012823 Solanum tuberosum HOM05D000499 ORTHO05D002036 1.6e-11 72.8 102 49.0
TAR624G0906 Trochodendron aralioides HOM05D000499 ORTHO05D002036 2.0e-11 72.4 96 53.1
TAR627G0888 Trochodendron aralioides HOM05D000499 ORTHO05D002036 2.0e-11 72.4 91 45.1
vmacro11865 Vaccinium macrocarpon HOM05D000499 ORTHO05D002036 2.0e-11 72.4 87 46.0
MELO3C002605.2 Cucumis melo HOM05D000499 ORTHO05D002036 2.7e-11 72.0 88 47.7
Eucgr.D00618 Eucalyptus grandis HOM05D000499 ORTHO05D002036 3.5e-11 71.6 94 53.2
Potri.011G053000 Populus trichocarpa HOM05D000499 ORTHO05D002036 4.5e-11 71.2 102 55.9
Atru.chr2.2609 Acer truncatum HOM05D000499 ORTHO05D002036 7.8e-11 70.5 88 45.5
Haze_09427 Corylus avellana HOM05D000499 ORTHO05D002036 7.8e-11 70.5 88 47.7
Manes.17G046100 Manihot esculenta HOM05D000499 ORTHO05D002036 7.8e-11 70.5 95 54.7
Thecc.07G089600 Theobroma cacao HOM05D000499 ORTHO05D002036 7.8e-11 70.5 88 48.9
GSVIVG01014338001 Vitis vinifera HOM05D000499 ORTHO05D002036 7.8e-11 70.5 95 46.3
ClCG03G006070 Citrullus lanatus HOM05D000499 ORTHO05D002036 1.0e-10 70.1 87 47.1
Duzib170G0661 Durio zibethinus HOM05D000499 ORTHO05D002036 1.0e-10 70.1 87 46.0
DCAR_004075 Daucus carota HOM05D000499 ORTHO05D002036 1.3e-10 69.7 97 45.4
GSVIVG01005212001 Vitis vinifera HOM05D000499 ORTHO05D002036 1.3e-10 69.7 106 51.9
Gorai.002G069900 Gossypium raimondii HOM05D000499 ORTHO05D002036 1.7e-10 69.3 88 50.0
Lj1C843T11 Lonicera japonica HOM05D000499 ORTHO05D002036 1.7e-10 69.3 86 48.8
THA.LOC104815554 Tarenaya hassleriana HOM05D000499 ORTHO05D002036 1.7e-10 69.3 92 47.8
Ca_01844_v3 Cicer arietinum L. HOM05D000499 ORTHO05D002036 2.9e-10 68.6 82 48.8
Gohir.A01G063600 Gossypium hirsutum HOM05D000499 ORTHO05D002036 2.9e-10 68.6 88 48.9
Nn1g06530 Nelumbo nucifera HOM05D000499 ORTHO05D002036 2.9e-10 68.6 88 44.3
EL10Ac4g08176 Beta vulgaris HOM05D000499 ORTHO05D002036 3.8e-10 68.2 92 45.7
Sopen02g023040 Solanum pennellii HOM05D000499 ORTHO05D002036 3.8e-10 68.2 89 43.8
Aqoxy4G00785 Aquilegia oxysepala HOM05D000499 ORTHO05D002036 5.0e-10 67.8 91 46.2
Duzib192G0883 Durio zibethinus HOM05D000499 ORTHO05D002036 5.0e-10 67.8 83 49.4
Hma1.2p1_0885F.1_g232570 Hydrangea macrophylla HOM05D000499 ORTHO05D002036 5.0e-10 67.8 88 56.8
TAR633G1432 Trochodendron aralioides HOM05D000499 ORTHO05D002036 5.0e-10 67.8 88 44.3
CANSAT56G3971 Cannabis sativa HOM05D000499 ORTHO05D002036 6.6e-10 67.4 86 44.2
Cc02_g13410 Coffea canephora HOM05D000499 ORTHO05D002036 6.6e-10 67.4 94 46.8
Gohir.A13G145700 Gossypium hirsutum HOM05D000499 ORTHO05D002036 6.6e-10 67.4 87 48.3
PGR083G1364 Punica granatum HOM05D000499 ORTHO05D002036 6.6e-10 67.4 85 49.4
TAR626G1356 Trochodendron aralioides HOM05D000499 ORTHO05D002036 6.6e-10 67.4 117 46.2
CiPaw.12G118300 Carya illinoinensis HOM05D000499 ORTHO05D002036 8.6e-10 67.0 88 45.5
Solyc02g078180.3 Solanum lycopersicum HOM05D000499 ORTHO05D002036 8.6e-10 67.0 89 43.8
Duzib160G0480 Durio zibethinus HOM05D000499 ORTHO05D002036 1.1e-09 66.6 82 51.2
Gohir.D01G050000 Gossypium hirsutum HOM05D000499 ORTHO05D002036 1.1e-09 66.6 88 48.9
PGR004G2336 Punica granatum HOM05D000499 ORTHO05D002036 1.5e-09 66.2 93 44.1
AUR62034296 Chenopodium quinoa HOM05D000499 ORTHO05D002036 1.9e-09 65.9 87 49.4
Cc05_g12030 Coffea canephora HOM05D000499 ORTHO05D002036 1.9e-09 65.9 87 46.0
Dinv20172 Davidia involucrata HOM05D000499 ORTHO05D002036 1.9e-09 65.9 84 47.6
Gohir.D13G150600 Gossypium hirsutum HOM05D000499 ORTHO05D002036 1.9e-09 65.9 87 46.0
Oeu016092.1 Olea europaea HOM05D000499 ORTHO05D002036 1.9e-09 65.9 96 45.8
DCAR_019553 Daucus carota HOM05D000499 ORTHO05D002036 2.5e-09 65.5 95 45.3
CSS0010201 Camellia sinensis var. sinensis HOM05D000499 ORTHO05D002036 3.3e-09 65.1 92 54.3
CSS0041261 Camellia sinensis var. sinensis HOM05D000499 ORTHO05D002036 3.3e-09 65.1 92 54.3
Sabra11G0036800 Salix brachista HOM05D000499 ORTHO05D002036 3.3e-09 65.1 110 44.5
Duzib213G0506 Durio zibethinus HOM05D000499 ORTHO05D002036 4.3e-09 64.7 89 44.9
Psat5g244240 Pisum sativum HOM05D000499 ORTHO05D002036 4.3e-09 64.7 84 51.2
TPR.G39015 Trifolium pratense HOM05D000499 ORTHO05D002036 4.3e-09 64.7 85 48.2
Gohir.D06G132000 Gossypium hirsutum HOM05D000499 ORTHO05D002036 5.6e-09 64.3 82 48.8
Gorai.010G153800 Gossypium raimondii HOM05D000499 ORTHO05D002036 5.6e-09 64.3 82 48.8
vmacro23041 Vaccinium macrocarpon HOM05D000499 ORTHO05D002036 5.6e-09 64.3 96 44.8
Cfa000467 Carpinus fangiana HOM05D000499 ORTHO05D002036 7.3e-09 63.9 92 48.9
CiPaw.11G169700 Carya illinoinensis HOM05D000499 ORTHO05D002036 7.3e-09 63.9 87 42.5
Ciclev10007828m.g Citrus clementina HOM05D000499 ORTHO05D002036 7.3e-09 63.9 95 41.1
AUR62019422 Chenopodium quinoa HOM05D000499 ORTHO05D002036 9.5e-09 63.5 89 43.8
Peaxi162Scf00661g00017 Petunia axillaris HOM05D000499 ORTHO05D002036 9.5e-09 63.5 93 44.1
CAN.G1164.39 Capsicum annuum HOM05D000499 ORTHO05D002036 1.2e-08 63.2 85 57.6
Cpa.g.sc80.64 Carica papaya HOM05D000499 ORTHO05D002036 1.2e-08 63.2 82 45.1
MELO3C016700.2 Cucumis melo HOM05D000499 ORTHO05D002036 1.2e-08 63.2 88 40.9
CANSAT35G1760 Cannabis sativa HOM05D000499 ORTHO05D002036 1.6e-08 62.8 102 51.0
PGSC0003DMG400029726 Solanum tuberosum HOM05D000499 ORTHO05D002036 1.6e-08 62.8 95 44.2
MBI07_g30179_MAGBIO Magnolia biondii HOM05D000499 ORTHO05D002036 2.1e-08 62.4 79 44.3
CAN.G289.49 Capsicum annuum HOM05D000499 ORTHO05D002036 3.6e-08 61.6 94 46.8
COL.COLO4_31465 Corchorus olitorius HOM05D000499 ORTHO05D002036 3.6e-08 61.6 86 47.7
Gorai.013G168400 Gossypium raimondii HOM05D000499 ORTHO05D002036 3.6e-08 61.6 87 44.8
Lalb_Chr25g0286371 Lupinus albus HOM05D000499 ORTHO05D002036 3.6e-08 61.6 81 45.7
Peaxi162Scf00069g01425 Petunia axillaris HOM05D000499 ORTHO05D002036 3.6e-08 61.6 88 46.6
Sabra16G0262300 Salix brachista HOM05D000499 ORTHO05D002036 3.6e-08 61.6 86 45.3
TWI38G1633 Tripterygium wilfordii HOM05D000499 ORTHO05D002036 3.6e-08 61.6 87 47.1
Ciclev10014620m.g Citrus clementina HOM05D000499 ORTHO05D002036 4.7e-08 61.2 102 43.1
CsaV3_4G033710 Cucumis sativus L. HOM05D000499 ORTHO05D002036 4.7e-08 61.2 89 41.6
Medtr2g085170 Medicago truncatula HOM05D000499 ORTHO05D002036 4.7e-08 61.2 82 47.6
Nitab4.5_0001796g0030 Nicotiana tabacum HOM05D000499 ORTHO05D002036 4.7e-08 61.2 87 43.7
TWI39G0116 Tripterygium wilfordii HOM05D000499 ORTHO05D002036 4.7e-08 61.2 86 43.0
Aqoxy1G02409 Aquilegia oxysepala HOM05D000499 ORTHO05D002036 6.1e-08 60.8 99 48.5
PSO210G6392 Papaver somniferum HOM05D000499 ORTHO05D002036 6.1e-08 60.8 87 50.6
PSO832G1660 Papaver somniferum HOM05D000499 ORTHO05D002036 6.1e-08 60.8 87 50.6
Potri.011G119300 Populus trichocarpa HOM05D000499 ORTHO05D002036 6.1e-08 60.8 92 40.2
SEGI_34771 Sequoiadendron giganteum HOM05D000499 ORTHO05D002036 6.1e-08 60.8 108 47.2
Glyma.12G224400 Glycine max HOM05D000499 ORTHO05D002036 8.0e-08 60.5 83 42.2
Aa31LG6G10200 Aethionema arabicum HOM05D000499 ORTHO05D002036 1.0e-07 60.1 84 45.2
CSS0046246 Camellia sinensis var. sinensis HOM05D000499 ORTHO05D002036 1.0e-07 60.1 100 52.0
PGSC0003DMG400022812 Solanum tuberosum HOM05D000499 ORTHO05D002036 1.0e-07 60.1 85 55.3
unitig_21.g20219 Utricularia gibba HOM05D000499 ORTHO05D002036 1.4e-07 59.7 90 37.8
CSS0049256 Camellia sinensis var. sinensis HOM05D000499 ORTHO05D002036 1.8e-07 59.3 84 46.4
Nitab4.5_0001336g0020 Nicotiana tabacum HOM05D000499 ORTHO05D002036 1.8e-07 59.3 87 43.7
Oeu050849.2 Olea europaea HOM05D000499 ORTHO05D002036 2.3e-07 58.9 107 40.2
Solyc07g063150.3 Solanum lycopersicum HOM05D000499 ORTHO05D002036 2.3e-07 58.9 90 42.2
Lj3g0024276 Lotus japonicus HOM05D000499 ORTHO05D002036 3.0e-07 58.5 80 45.0
SGA_v2.0_scaffold22G09714 Striga asiatica HOM05D000499 ORTHO05D002036 3.0e-07 58.5 91 41.8
Gohir.A06G127100 Gossypium hirsutum HOM05D000499 ORTHO05D002036 4.0e-07 58.2 82 45.1
Gorai.006G087300 Gossypium raimondii HOM05D000499 ORTHO05D002036 4.0e-07 58.2 83 43.4
PGSC0003DMG400012417 Solanum tuberosum HOM05D000499 ORTHO05D002036 4.0e-07 58.2 89 40.4
Lsat_1_v5_gn_7_21361 Lactuca sativa HOM05D000499 ORTHO05D002036 5.2e-07 57.8 88 42.0
Cfa020585 Carpinus fangiana HOM05D000499 ORTHO05D002036 6.8e-07 57.4 87 41.4
HanXRQChr17g0560211 Helianthus annuus HOM05D000499 ORTHO05D002036 1.2e-06 56.6 96 43.8
Sc22g0002050 Simmondsia chinensis HOM05D000499 ORTHO05D002036 1.2e-06 56.6 87 37.9
MD03G1227800 Malus domestica HOM05D000499 ORTHO05D002036 1.5e-06 56.2 87 50.6
SalBow7G1157 Salvia bowleyana HOM05D000499 ORTHO05D002036 1.5e-06 56.2 96 46.9
Aa31LG10G2060 Aethionema arabicum HOM05D000499 ORTHO05D002036 2.0e-06 55.8 88 39.8
AL1G41790 Arabidopsis lyrata HOM05D000499 ORTHO05D002036 2.0e-06 55.8 81 55.6
Solyc10g009050.3 Solanum lycopersicum HOM05D000499 ORTHO05D002036 2.0e-06 55.8 85 50.6
EL10Ac8g20386 Beta vulgaris HOM05D000499 ORTHO05D002036 2.6e-06 55.5 85 50.6
BcaC06g35344 Brassica carinata HOM05D000499 ORTHO05D002036 2.6e-06 55.5 86 41.9
A07p11400 Brassica napus HOM05D000499 ORTHO05D002036 2.6e-06 55.5 86 41.9
C07p17180 Brassica napus HOM05D000499 ORTHO05D002036 2.6e-06 55.5 86 41.9
BolC7t42222H Brassica oleracea HOM05D000499 ORTHO05D002036 2.6e-06 55.5 86 41.9
BraA07t28928Z Brassica rapa HOM05D000499 ORTHO05D002036 2.6e-06 55.5 86 41.9
SHI01742 Sapria himalayana HOM05D000023 ORTHO05D000014 2.6e-06 55.5 33 75.8
Migut.H01939 Erythranthe guttata HOM05D000499 ORTHO05D002036 3.4e-06 55.1 87 43.7
MSTRG.14701 Avicennia marina HOM05D000499 ORTHO05D002036 4.4e-06 54.7 97 39.2
CDE08G1161 Ceratophyllum demersum HOM05D000499 ORTHO05D002036 4.4e-06 54.7 79 40.5
Eucgr.F01129 Eucalyptus grandis HOM05D000499 ORTHO05D002036 4.4e-06 54.7 90 37.8
Thhalv10011374m.g Eutrema salsugineum HOM05D000499 ORTHO05D002036 4.4e-06 54.7 88 40.9
SalBow7G3537 Salvia bowleyana HOM05D000499 ORTHO05D002036 4.4e-06 54.7 80 46.2
SGA_v2.0_scaffold100G29687 Striga asiatica HOM05D000499 ORTHO05D002036 4.4e-06 54.7 92 41.3
CARHR043270 Cardamine hirsuta HOM05D000499 ORTHO05D002036 7.5e-06 53.9 92 39.1
Oeu024910.1 Olea europaea HOM05D000499 ORTHO05D002036 7.5e-06 53.9 82 41.5
PGR042G3929 Punica granatum HOM05D000499 ORTHO05D002036 7.5e-06 53.9 93 48.4
RcHm_v2.0_Chr5g0008541 Rosa chinensis HOM05D000499 ORTHO05D002036 7.5e-06 53.9 33 72.7
Sopen10g004830 Solanum pennellii HOM05D000499 ORTHO05D002036 7.5e-06 53.9 84 50.0
CAN.G162.61 Capsicum annuum HOM05D000499 ORTHO05D002036 9.8e-06 53.5 87 37.9
Migut.M01139 Erythranthe guttata HOM05D000499 ORTHO05D002036 9.8e-06 53.5 89 40.4
Manes.03G110100 Manihot esculenta HOM05D000499 ORTHO05D002036 9.8e-06 53.5 91 37.4


User provided reference genes

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