Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G16501 Trifolium pratense HOM05D003630 ORTHO05D004151 1.6e-53 212.6 113 100.0
Ca_00350_v3 Cicer arietinum L. HOM05D003630 ORTHO05D004151 1.4e-46 189.5 113 89.4
Medtr2g014240 Medicago truncatula HOM05D003630 ORTHO05D004151 5.3e-46 187.6 113 87.6
Lj6g0013661 Lotus japonicus HOM05D003630 ORTHO05D004151 1.8e-38 162.5 113 75.2
arahy.Tifrunner.gnm1.ann1.H8XLFU Arachis hypogaea HOM05D003630 ORTHO05D004151 1.6e-37 159.5 113 73.5
arahy.Tifrunner.gnm1.ann1.S1G93A Arachis hypogaea HOM05D003630 ORTHO05D004151 1.6e-37 159.5 113 73.5
Psat1g203680 Pisum sativum HOM05D003630 ORTHO05D004151 4.5e-37 157.9 101 83.2
Phvul.006G183600 Phaseolus vulgaris HOM05D003630 ORTHO05D004151 1.0e-36 156.8 116 74.1
Lalb_Chr15g0089711 Lupinus albus HOM05D003630 ORTHO05D004151 3.8e-36 154.8 114 75.4
VMungo0540G1118 Vigna mungo HOM05D003630 ORTHO05D004151 1.9e-35 152.5 116 73.3
Lalb_Chr18g0059451 Lupinus albus HOM05D003630 ORTHO05D004151 4.2e-35 151.4 115 74.8
CiPaw.09G062300 Carya illinoinensis HOM05D003630 ORTHO05D004151 3.0e-33 145.2 117 68.4
CiPaw.10G051200 Carya illinoinensis HOM05D003630 ORTHO05D004151 8.8e-33 143.7 120 67.5
arahy.Tifrunner.gnm1.ann1.Q5B35H Arachis hypogaea HOM05D003630 ORTHO05D004151 2.0e-32 142.5 120 67.5
Glyma.13G237000 Glycine max HOM05D003630 ORTHO05D004151 2.0e-32 142.5 113 69.9
Duzib160G0312 Durio zibethinus HOM05D003630 ORTHO05D004151 2.6e-32 142.1 113 69.0
ATR0752G193 Amborella trichopoda HOM05D003630 ORTHO05D004151 5.7e-32 141.0 120 65.0
Cpa.g.sc373.3 Carica papaya HOM05D003630 ORTHO05D004151 9.8e-32 140.2 119 67.2
Sed0001316 Sechium edule HOM05D003630 ORTHO05D004151 2.2e-31 139.0 113 60.2
Sed0024812 Sechium edule HOM05D003630 ORTHO05D004151 2.2e-31 139.0 114 65.8
Glyma.15G076500 Glycine max HOM05D003630 ORTHO05D004151 2.8e-31 138.7 116 69.0
ClCG01G023140 Citrullus lanatus HOM05D003630 ORTHO05D004151 3.7e-31 138.3 119 65.5
Gohir.A05G159800 Gossypium hirsutum HOM05D003630 ORTHO05D004151 6.3e-31 137.5 118 60.2
CSS0035295 Camellia sinensis var. sinensis HOM05D003630 ORTHO05D004151 8.3e-31 137.1 121 63.6
Nn1g04163 Nelumbo nucifera HOM05D003630 ORTHO05D004151 8.3e-31 137.1 118 65.3
TAR624G0603 Trochodendron aralioides HOM05D003630 ORTHO05D004151 8.3e-31 137.1 116 56.9
arahy.Tifrunner.gnm1.ann1.RY2Y1Z Arachis hypogaea HOM05D003630 ORTHO05D004151 1.4e-30 136.3 120 65.8
Prupe.4G050800 Prunus persica HOM05D003630 ORTHO05D004151 1.4e-30 136.3 114 66.7
Cc02_g13650 Coffea canephora HOM05D003630 ORTHO05D004151 2.4e-30 135.6 124 61.3
RcHm_v2.0_Chr5g0008921 Rosa chinensis HOM05D003630 ORTHO05D004151 2.4e-30 135.6 114 70.2
TWI38G1513 Tripterygium wilfordii HOM05D003630 ORTHO05D004151 3.1e-30 135.2 117 68.4
DCAR_003387 Daucus carota HOM05D003630 ORTHO05D004151 5.4e-30 134.4 120 64.2
Manes.17G047900 Manihot esculenta HOM05D003630 ORTHO05D004151 7.0e-30 134.0 116 64.7
SalBow8G2511 Salvia bowleyana HOM05D003630 ORTHO05D004151 7.0e-30 134.0 114 57.0
Sed0017838 Sechium edule HOM05D003630 ORTHO05D004151 7.0e-30 134.0 119 64.7
Gohir.A06G129700 Gossypium hirsutum HOM05D003630 ORTHO05D004151 9.2e-30 133.7 111 66.7
Gohir.D06G133900 Gossypium hirsutum HOM05D003630 ORTHO05D004151 9.2e-30 133.7 111 66.7
MSTRG.15866 Avicennia marina HOM05D003630 ORTHO05D004151 1.2e-29 133.3 118 62.7
CsaV3_6G050280 Cucumis sativus L. HOM05D003630 ORTHO05D004151 1.2e-29 133.3 119 63.9
Gohir.D05G162500 Gossypium hirsutum HOM05D003630 ORTHO05D004151 1.2e-29 133.3 118 58.5
CANSAT35G1140 Cannabis sativa HOM05D003630 ORTHO05D004151 1.6e-29 132.9 124 63.7
QL05p041782 Quercus lobata HOM05D003630 ORTHO05D004151 2.0e-29 132.5 118 62.7
GSVIVG01021092001 Vitis vinifera HOM05D003630 ORTHO05D004151 2.7e-29 132.1 118 66.1
Dinv17335 Davidia involucrata HOM05D003630 ORTHO05D004151 4.5e-29 131.3 120 62.5
CDE11G0243 Ceratophyllum demersum HOM05D003630 ORTHO05D004151 5.9e-29 131.0 116 60.3
ClCG03G008090 Citrullus lanatus HOM05D003630 ORTHO05D004151 5.9e-29 131.0 113 61.9
MELO3C002620.2 Cucumis melo HOM05D003630 ORTHO05D004151 5.9e-29 131.0 113 61.9
CsaV3_1G012460 Cucumis sativus L. HOM05D003630 ORTHO05D004151 5.9e-29 131.0 113 61.9
FAN16G2355 Fragaria x ananassa HOM05D003630 ORTHO05D004151 5.9e-29 131.0 112 67.0
FAN25G0655 Fragaria x ananassa HOM05D003630 ORTHO05D004151 5.9e-29 131.0 112 67.0
Migut.H01476 Erythranthe guttata HOM05D003630 ORTHO05D004151 7.8e-29 130.6 121 62.8
unitig_749.g13657 Utricularia gibba HOM05D003630 ORTHO05D004151 7.8e-29 130.6 119 62.2
vmacro15923 Vaccinium macrocarpon HOM05D003630 ORTHO05D004151 7.8e-29 130.6 123 57.7
Actinidia07592 Actinidia chinensis HOM05D003630 ORTHO05D004151 1.0e-28 130.2 121 61.2
TAR626G1897 Trochodendron aralioides HOM05D003630 ORTHO05D004151 1.7e-28 129.4 119 65.5
Migut.M01120 Erythranthe guttata HOM05D003630 ORTHO05D004151 2.3e-28 129.0 122 52.5
Lalb_Chr09g0327781 Lupinus albus HOM05D003630 ORTHO05D004151 2.3e-28 129.0 116 57.8
Oeu056100.2 Olea europaea HOM05D003630 ORTHO05D004151 2.3e-28 129.0 118 64.4
PGSC0003DMG400012826 Solanum tuberosum HOM05D003630 ORTHO05D004151 2.3e-28 129.0 129 58.9
Carub.0001s2678 Capsella rubella HOM05D003630 ORTHO05D004151 2.9e-28 128.6 120 60.0
MBI02_g32444_MAGBIO Magnolia biondii HOM05D003630 ORTHO05D004151 2.9e-28 128.6 124 62.1
Oeu029367.1 Olea europaea HOM05D003630 ORTHO05D004151 2.9e-28 128.6 118 61.0
Oeu012144.1 Olea europaea HOM05D003630 ORTHO05D004151 3.8e-28 128.3 121 62.0
MSTRG.13203 Avicennia marina HOM05D003630 ORTHO05D004151 5.0e-28 127.9 118 63.6
BcaB07g32449 Brassica carinata HOM05D003630 ORTHO05D004151 6.6e-28 127.5 118 60.2
Hma1.2p1_0208F.1_g088370 Hydrangea macrophylla HOM05D003630 ORTHO05D004151 6.6e-28 127.5 124 59.7
ECA236G4733 Erigeron canadensis HOM05D003630 ORTHO05D004151 8.6e-28 127.1 117 59.0
PGSC0003DMG400029732 Solanum tuberosum HOM05D003630 ORTHO05D004151 8.6e-28 127.1 117 58.1
CiPaw.04G030300 Carya illinoinensis HOM05D003630 ORTHO05D004151 1.5e-27 126.3 108 66.7
BcaC05g26841 Brassica carinata HOM05D003630 ORTHO05D004151 1.9e-27 125.9 118 58.5
Nitab4.5_0003487g0100 Nicotiana tabacum HOM05D003630 ORTHO05D004151 1.9e-27 125.9 124 62.1
Solyc03g006360.3 Solanum lycopersicum HOM05D003630 ORTHO05D004151 1.9e-27 125.9 129 56.6
HPP92_018480 Vanilla planifolia HOM05D003630 ORTHO05D004151 1.9e-27 125.9 122 59.8
HPP92_018482 Vanilla planifolia HOM05D003630 ORTHO05D004151 1.9e-27 125.9 122 59.8
THA.LOC104812301 Tarenaya hassleriana HOM05D003630 ORTHO05D004151 2.5e-27 125.6 116 63.8
FvH4_3g08830 Fragaria vesca HOM05D003630 ORTHO05D004151 3.3e-27 125.2 115 64.3
FAN11G3953 Fragaria x ananassa HOM05D003630 ORTHO05D004151 3.3e-27 125.2 115 64.3
FAN21G0750 Fragaria x ananassa HOM05D003630 ORTHO05D004151 4.3e-27 124.8 111 62.2
PGR042G3375 Punica granatum HOM05D003630 ORTHO05D004151 5.6e-27 124.4 115 66.1
SGA_v2.0_scaffold100G29703 Striga asiatica HOM05D003630 ORTHO05D004151 5.6e-27 124.4 118 62.7
Thhalv10009086m.g Eutrema salsugineum HOM05D003630 ORTHO05D004151 9.5e-27 123.6 123 60.2
Solyc02g077880.3 Solanum lycopersicum HOM05D003630 ORTHO05D004151 1.6e-26 122.9 117 59.8
Sopen02g022730 Solanum pennellii HOM05D003630 ORTHO05D004151 1.6e-26 122.9 117 59.8
PGR004G0839 Punica granatum HOM05D003630 ORTHO05D004151 2.1e-26 122.5 124 61.3
CSS0033873 Camellia sinensis var. sinensis HOM05D003630 ORTHO05D004151 2.8e-26 122.1 103 65.0
CSS0037340 Camellia sinensis var. sinensis HOM05D003630 ORTHO05D004151 3.6e-26 121.7 106 63.2
Nitab4.5_0000516g0130 Nicotiana tabacum HOM05D003630 ORTHO05D004151 6.1e-26 120.9 123 58.5
CDE05G2086 Ceratophyllum demersum HOM05D003630 ORTHO05D004151 8.0e-26 120.6 116 55.2
Os11g0671000 Oryza sativa ssp. japonica HOM05D003630 ORTHO05D004151 1.0e-25 120.2 126 57.1
Thecc.06G183500 Theobroma cacao HOM05D003630 ORTHO05D004151 1.4e-25 119.8 107 69.2
AUR62017046 Chenopodium quinoa HOM05D003630 ORTHO05D004151 1.8e-25 119.4 120 60.0
AUR62014851 Chenopodium quinoa HOM05D003630 ORTHO05D004151 2.3e-25 119.0 120 60.0
Aqoxy1G02347 Aquilegia oxysepala HOM05D003630 ORTHO05D004151 5.2e-25 117.9 118 56.8
Cfa000510 Carpinus fangiana HOM05D003630 ORTHO05D004151 8.9e-25 117.1 108 63.9
HPP92_014190 Vanilla planifolia HOM05D003630 ORTHO05D004151 8.9e-25 117.1 116 48.3
Gorai.010G155600 Gossypium raimondii HOM05D003630 ORTHO05D004151 1.2e-24 116.7 101 66.3
Dinv40586 Davidia involucrata HOM05D003630 ORTHO05D004151 2.0e-24 115.9 108 64.8
HanXRQChr01g0003821 Helianthus annuus HOM05D003630 ORTHO05D004151 2.0e-24 115.9 113 55.8
MELO3C007269.2 Cucumis melo HOM05D003630 ORTHO05D004151 2.6e-24 115.5 107 63.6
Sp2g09130 Schrenkiella parvula HOM05D003630 ORTHO05D004151 4.4e-24 114.8 123 52.8
EL10Ac8g20421 Beta vulgaris HOM05D003630 ORTHO05D004151 5.7e-24 114.4 123 56.1
Peaxi162Scf01100g00009 Petunia axillaris HOM05D003630 ORTHO05D004151 5.7e-24 114.4 118 59.3
C02p44910 Brassica napus HOM05D003630 ORTHO05D004151 7.5e-24 114.0 123 53.7
BolC2t10526H Brassica oleracea HOM05D003630 ORTHO05D004151 7.5e-24 114.0 123 53.7
Thhalv10003427m.g Eutrema salsugineum HOM05D003630 ORTHO05D004151 7.5e-24 114.0 122 53.3
HanXRQChr04g0123791 Helianthus annuus HOM05D003630 ORTHO05D004151 7.5e-24 114.0 112 59.8
A02p28330 Brassica napus HOM05D003630 ORTHO05D004151 9.8e-24 113.6 123 52.8
BraA02t07868Z Brassica rapa HOM05D003630 ORTHO05D004151 9.8e-24 113.6 123 55.3
DCAR_008021 Daucus carota HOM05D003630 ORTHO05D004151 9.8e-24 113.6 120 56.7
Ah.09g237490 Amaranthus hybridus HOM05D003630 ORTHO05D004151 1.3e-23 113.2 121 58.7
Potri.004G047100 Populus trichocarpa HOM05D003630 ORTHO05D004151 1.3e-23 113.2 112 64.3
Haze_06402 Corylus avellana HOM05D003630 ORTHO05D004151 1.7e-23 112.8 110 62.7
A03p18920 Brassica napus HOM05D003630 ORTHO05D004151 2.2e-23 112.5 112 50.0
TWI38G1867 Tripterygium wilfordii HOM05D003630 ORTHO05D004151 2.2e-23 112.5 106 64.2
CARHR178890 Cardamine hirsuta HOM05D003630 ORTHO05D004151 3.7e-23 111.7 118 60.2
Sp4g16220 Schrenkiella parvula HOM05D003630 ORTHO05D004151 3.7e-23 111.7 110 50.0
Carub.0004s1550 Capsella rubella HOM05D003630 ORTHO05D004151 4.9e-23 111.3 110 50.9
AT1G28330 Arabidopsis thaliana HOM05D003630 ORTHO05D004151 6.4e-23 110.9 109 58.7
C04p15210 Brassica napus HOM05D003630 ORTHO05D004151 8.3e-23 110.5 115 54.8
BolC4t23094H Brassica oleracea HOM05D003630 ORTHO05D004151 8.3e-23 110.5 115 54.8
AT2G33830 Arabidopsis thaliana HOM05D003630 ORTHO05D004151 1.1e-22 110.2 117 53.0
BcaB01g03917 Brassica carinata HOM05D003630 ORTHO05D004151 1.1e-22 110.2 110 50.0
BcaB02g10597 Brassica carinata HOM05D003630 ORTHO05D004151 1.1e-22 110.2 115 52.2
BcaC01g05821 Brassica carinata HOM05D003630 ORTHO05D004151 1.1e-22 110.2 110 50.0
BcaC01g05822 Brassica carinata HOM05D003630 ORTHO05D004151 1.1e-22 110.2 110 50.0
BraA03t11151Z Brassica rapa HOM05D003630 ORTHO05D004151 1.1e-22 110.2 110 50.0
Thhalv10017461m.g Eutrema salsugineum HOM05D003630 ORTHO05D004151 1.1e-22 110.2 110 50.9
AT5G44300 Arabidopsis thaliana HOM05D003630 ORTHO05D004151 1.4e-22 109.8 123 52.8
BolC3t14590H Brassica oleracea HOM05D003630 ORTHO05D004151 1.4e-22 109.8 116 53.4
Ciclev10017162m.g Citrus clementina HOM05D003630 ORTHO05D004151 1.4e-22 109.8 110 65.5
BcaC02g11461 Brassica carinata HOM05D003630 ORTHO05D004151 1.8e-22 109.4 115 54.8
A05p11750 Brassica napus HOM05D003630 ORTHO05D004151 1.8e-22 109.4 115 52.2
BraA05t20119Z Brassica rapa HOM05D003630 ORTHO05D004151 1.8e-22 109.4 115 52.2
Sopen03g002370 Solanum pennellii HOM05D003630 ORTHO05D004151 2.4e-22 109.0 121 57.9
AL1G41920 Arabidopsis lyrata HOM05D003630 ORTHO05D004151 4.1e-22 108.2 117 53.8
Carub.0008s0422 Capsella rubella HOM05D003630 ORTHO05D004151 4.1e-22 108.2 115 51.3
AL8G15690 Arabidopsis lyrata HOM05D003630 ORTHO05D004151 5.4e-22 107.8 123 52.0
PSO541G4117 Papaver somniferum HOM05D003630 ORTHO05D004151 7.0e-22 107.5 125 55.2
SEGI_31386 Sequoiadendron giganteum HOM05D003630 ORTHO05D004151 7.0e-22 107.5 135 51.1
Manes.16G030000 Manihot esculenta HOM05D003630 ORTHO05D004151 9.2e-22 107.1 105 62.9
Rhsim02G0132700 Rhododendron simsii HOM05D003630 ORTHO05D004151 9.2e-22 107.1 112 52.7
Duzib235G1039 Durio zibethinus HOM05D003630 ORTHO05D004151 1.6e-21 106.3 109 61.5
Aa31sc86G60 Aethionema arabicum HOM05D003630 ORTHO05D004151 2.0e-21 105.9 103 53.4
A09p37730 Brassica napus HOM05D003630 ORTHO05D004151 2.0e-21 105.9 116 55.2
C05p27220 Brassica napus HOM05D003630 ORTHO05D004151 2.0e-21 105.9 116 55.2
BraA09t39285Z Brassica rapa HOM05D003630 ORTHO05D004151 2.0e-21 105.9 116 55.2
AL4G29600 Arabidopsis lyrata HOM05D003630 ORTHO05D004151 2.7e-21 105.5 117 53.0
Atru.chr10.1820 Acer truncatum HOM05D003630 ORTHO05D004151 4.6e-21 104.8 108 61.1
Atru.chr10.1837 Acer truncatum HOM05D003630 ORTHO05D004151 4.6e-21 104.8 108 61.1
Aa31LG9G8870 Aethionema arabicum HOM05D003630 ORTHO05D004151 5.9e-21 104.4 115 50.4
BolC5t31435H Brassica oleracea HOM05D003630 ORTHO05D004151 5.9e-21 104.4 116 53.4
CARHR027820 Cardamine hirsuta HOM05D003630 ORTHO05D004151 5.9e-21 104.4 118 52.5
CARHR127940 Cardamine hirsuta HOM05D003630 ORTHO05D004151 5.9e-21 104.4 112 49.1
Gorai.009G167500 Gossypium raimondii HOM05D003630 ORTHO05D004151 5.9e-21 104.4 101 56.4
Sabra04G0029500 Salix brachista HOM05D003630 ORTHO05D004151 5.9e-21 104.4 110 61.8
Lsat_1_v5_gn_7_20981 Lactuca sativa HOM05D003630 ORTHO05D004151 7.8e-21 104.0 103 56.3
Sp1g24570 Schrenkiella parvula HOM05D003630 ORTHO05D004151 7.8e-21 104.0 106 57.5
COL.COLO4_31436 Corchorus olitorius HOM05D003630 ORTHO05D004151 1.3e-20 103.2 108 64.8
Lsat_1_v5_gn_1_124360 Lactuca sativa HOM05D003630 ORTHO05D004151 2.3e-20 102.4 100 56.0
Aa31sc652G110 Aethionema arabicum HOM05D003630 ORTHO05D004151 3.0e-20 102.1 110 44.5
Aa31sc652G20 Aethionema arabicum HOM05D003630 ORTHO05D004151 3.0e-20 102.1 110 44.5
THA.LOC104814224 Tarenaya hassleriana HOM05D003630 ORTHO05D004151 1.1e-19 100.1 110 56.4
Sed0007569 Sechium edule HOM05D003630 ORTHO05D004151 3.3e-19 98.6 100 55.0
PSO675G3190 Papaver somniferum HOM05D003630 ORTHO05D004151 7.3e-19 97.4 113 52.2
Sc24g0001020 Simmondsia chinensis HOM05D003630 ORTHO05D004151 9.5e-19 97.1 108 55.6
BcaC03g16649 Brassica carinata HOM05D003630 ORTHO05D004151 2.8e-18 95.5 111 51.4
Pp3c15_6160 Physcomitrium patens HOM05D003630 ORTHO05D004151 1.4e-17 93.2 148 35.8
C03p22060 Brassica napus HOM05D003630 ORTHO05D004151 5.2e-17 91.3 104 51.0
CAN.G529.26 Capsicum annuum HOM05D003630 ORTHO05D004151 1.3e-15 86.7 70 58.6
ECA248G1596 Erigeron canadensis HOM05D000885 ORTHO05D008875 6.4e-15 84.3 54 70.4
BcaB07g30534 Brassica carinata HOM05D003630 ORTHO05D004151 8.3e-15 84.0 107 48.6
Sc17g0006070 Simmondsia chinensis HOM05D003630 ORTHO05D004151 1.9e-14 82.8 109 52.3
Mapoly0057s0054 Marchantia polymorpha HOM05D003630 ORTHO05D004151 2.4e-14 82.4 139 36.0
AagrBONN_evm.TU.Sc2ySwM_228.5600 Anthoceros agrestis HOM05D003630 ORTHO05D004151 9.2e-14 80.5 148 35.8
MD14G1054500 Malus domestica HOM05D003630 ORTHO05D004151 9.2e-14 80.5 94 47.9
SMO343G0126 Selaginella moellendorffii HOM05D003630 ORTHO05D004151 1.3e-12 76.6 154 35.7
SMO367G0919 Selaginella moellendorffii HOM05D003630 ORTHO05D004151 5.0e-12 74.7 115 40.9
AagrBONN_evm.TU.Sc2ySwM_362.1976 Anthoceros agrestis HOM05D003630 ORTHO05D004151 2.8e-10 68.9 88 43.2
Pp3c24_1050 Physcomitrium patens HOM05D003630 ORTHO05D004151 3.1e-09 65.5 153 30.7
Aa31LG9G7730 Aethionema arabicum HOM05D003630 ORTHO05D004151 1.3e-07 60.1 85 44.7
MBI19_g38000_MAGBIO Magnolia biondii HOM05D002144 ORTHO05D002170 8.3e-07 57.4 121 31.4
Pp3c23_13750 Physcomitrium patens HOM05D003630 ORTHO05D004151 1.4e-06 56.6 161 30.4
Pp3c10_24000 Physcomitrium patens HOM05D003630 ORTHO05D004151 1.9e-06 56.2 155 28.4
COL.COLO4_29750 Corchorus olitorius HOM05D003630 ORTHO05D004151 5.4e-06 54.7 42 69.0
Eucgr.D00606 Eucalyptus grandis HOM05D003630 ORTHO05D004151 9.2e-06 53.9 41 58.5
Eucgr.E03257 Eucalyptus grandis HOM05D003630 ORTHO05D004151 9.2e-06 53.9 27 85.2


User provided reference genes

Program Settings