Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G16488 Trifolium pratense HOM05D000718 ORTHO05D007431 4.7e-266 920.6 461 100.0
Psat0s1037g0040 Pisum sativum HOM05D000718 ORTHO05D007431 1.3e-247 859.4 460 95.0
Ca_12194_v3 Cicer arietinum L. HOM05D000718 ORTHO05D007431 1.4e-246 855.9 461 93.3
Medtr8g464030 Medicago truncatula HOM05D000718 ORTHO05D007431 3.0e-244 848.2 500 86.6
Lj3g0001987 Lotus japonicus HOM05D000718 ORTHO05D007431 1.7e-236 822.4 461 88.1
Glyma.12G157600 Glycine max HOM05D000718 ORTHO05D007431 2.0e-224 782.3 464 85.1
Glyma.06G228900 Glycine max HOM05D000718 ORTHO05D007431 1.9e-222 775.8 465 84.5
Phvul.011G162200 Phaseolus vulgaris HOM05D000718 ORTHO05D007431 1.9e-222 775.8 463 84.0
arahy.Tifrunner.gnm1.ann1.6IHZ0U Arachis hypogaea HOM05D000718 ORTHO05D007431 5.1e-220 767.7 463 83.2
Lalb_Chr01g0006831 Lupinus albus HOM05D000718 ORTHO05D007431 1.3e-215 753.1 461 82.2
arahy.Tifrunner.gnm1.ann1.STN4DM Arachis hypogaea HOM05D000718 ORTHO05D007431 1.7e-215 752.7 456 82.7
Lalb_Chr03g0031171 Lupinus albus HOM05D000718 ORTHO05D007431 1.3e-207 726.5 461 81.1
GSVIVG01014199001 Vitis vinifera HOM05D000718 ORTHO05D007431 6.1e-205 717.6 461 75.3
MD03G1243500 Malus domestica HOM05D000718 ORTHO05D007431 7.4e-203 710.7 458 74.7
CANSAT35G0289 Cannabis sativa HOM05D000718 ORTHO05D007431 3.7e-202 708.4 461 75.9
Haze_09324 Corylus avellana HOM05D000718 ORTHO05D007431 5.3e-201 704.5 476 73.7
Dinv18364 Davidia involucrata HOM05D000718 ORTHO05D007431 1.3e-199 699.9 464 73.1
Prupe.4G164800 Prunus persica HOM05D000718 ORTHO05D007431 2.9e-199 698.7 459 72.3
FvH4_3g18310 Fragaria vesca HOM05D000718 ORTHO05D007431 9.4e-198 693.7 458 72.9
RcHm_v2.0_Chr5g0030941 Rosa chinensis HOM05D000718 ORTHO05D007431 9.4e-198 693.7 458 73.4
Cfa019567 Carpinus fangiana HOM05D000718 ORTHO05D007431 3.6e-197 691.8 448 75.7
Rhsim06G0207800 Rhododendron simsii HOM05D000718 ORTHO05D007431 1.8e-196 689.5 461 73.8
CiPaw.11G160400 Carya illinoinensis HOM05D000718 ORTHO05D007431 3.9e-196 688.3 464 72.8
FAN16G1727 Fragaria x ananassa HOM05D000718 ORTHO05D007431 2.5e-195 685.6 467 71.3
FAN25G1161 Fragaria x ananassa HOM05D000718 ORTHO05D007431 2.5e-195 685.6 458 72.7
THA.LOC104822564 Tarenaya hassleriana HOM05D000718 ORTHO05D007431 8.2e-194 680.6 461 72.9
QL08p026242 Quercus lobata HOM05D000718 ORTHO05D007431 1.8e-193 679.5 476 72.1
Thecc.07G114900 Theobroma cacao HOM05D000718 ORTHO05D007431 2.4e-193 679.1 464 71.6
FAN11G0057 Fragaria x ananassa HOM05D000718 ORTHO05D007431 4.1e-193 678.3 458 72.3
COL.COLO4_17547 Corchorus olitorius HOM05D000718 ORTHO05D007431 9.1e-193 677.2 478 70.5
EL10Ac4g08344 Beta vulgaris HOM05D000718 ORTHO05D007431 1.0e-191 673.7 461 72.5
VMungo1127G0879 Vigna mungo HOM05D000718 ORTHO05D007431 1.3e-191 673.3 410 82.4
ClCG11G017460 Citrullus lanatus HOM05D000718 ORTHO05D007431 2.2e-191 672.5 461 72.7
Lj1A829G32 Lonicera japonica HOM05D000718 ORTHO05D007431 2.9e-191 672.2 463 69.5
Sed0007644 Sechium edule HOM05D000718 ORTHO05D007431 8.5e-191 670.6 459 71.5
MELO3C025639.2 Cucumis melo HOM05D000718 ORTHO05D007431 1.1e-190 670.2 461 72.9
Atru.chr2.2147 Acer truncatum HOM05D000718 ORTHO05D007431 1.9e-190 669.5 461 70.5
Duzib187G1570 Durio zibethinus HOM05D000718 ORTHO05D007431 5.5e-190 667.9 463 70.2
PGSC0003DMG400007071 Solanum tuberosum HOM05D000718 ORTHO05D007431 1.6e-189 666.4 462 70.6
Actinidia12577 Actinidia chinensis HOM05D000718 ORTHO05D007431 2.7e-189 665.6 464 70.7
Ah.04g164270 Amaranthus hybridus HOM05D000718 ORTHO05D007431 2.7e-189 665.6 461 72.0
AL3G27230 Arabidopsis lyrata HOM05D000718 ORTHO05D007431 2.7e-189 665.6 459 71.0
PGR031G2045 Punica granatum HOM05D000718 ORTHO05D007431 1.0e-188 663.7 462 71.4
Nitab4.5_0003565g0040 Nicotiana tabacum HOM05D000718 ORTHO05D007431 1.8e-188 662.9 462 70.6
TWI39G0589 Tripterygium wilfordii HOM05D000718 ORTHO05D007431 1.8e-188 662.9 459 69.9
CARHR089850 Cardamine hirsuta HOM05D000718 ORTHO05D007431 2.3e-188 662.5 460 71.1
Eucgr.K01884 Eucalyptus grandis HOM05D000718 ORTHO05D007431 2.3e-188 662.5 460 71.3
Nitab4.5_0006953g0050 Nicotiana tabacum HOM05D000718 ORTHO05D007431 3.9e-188 661.8 462 70.1
Carub.0003s1457 Capsella rubella HOM05D000718 ORTHO05D007431 6.7e-188 661.0 459 70.6
Peaxi162Scf00111g01475 Petunia axillaris HOM05D000718 ORTHO05D007431 1.1e-187 660.2 462 69.9
BolC5t33913H Brassica oleracea HOM05D000718 ORTHO05D007431 2.6e-187 659.1 459 70.6
Solyc07g062450.3 Solanum lycopersicum HOM05D000718 ORTHO05D007431 2.6e-187 659.1 462 70.1
Sopen07g030690 Solanum pennellii HOM05D000718 ORTHO05D007431 4.4e-187 658.3 462 70.1
AT3G14910 Arabidopsis thaliana HOM05D000718 ORTHO05D007431 7.4e-187 657.5 459 70.2
Potri.001G390700 Populus trichocarpa HOM05D000718 ORTHO05D007431 9.7e-187 657.1 460 70.0
DCAR_013156 Daucus carota HOM05D000718 ORTHO05D007431 2.2e-186 656.0 460 69.3
Thhalv10020708m.g Eutrema salsugineum HOM05D000718 ORTHO05D007431 3.7e-186 655.2 459 69.9
BcaB06g25332 Brassica carinata HOM05D000718 ORTHO05D007431 5.3e-185 651.4 453 71.1
Cc05_g11090 Coffea canephora HOM05D000718 ORTHO05D007431 7.0e-185 651.0 462 69.5
A05p34500 Brassica napus HOM05D000718 ORTHO05D007431 9.1e-185 650.6 456 70.2
BraA05t22270Z Brassica rapa HOM05D000718 ORTHO05D007431 9.1e-185 650.6 456 70.2
vmacro23465 Vaccinium macrocarpon HOM05D000718 ORTHO05D007431 1.6e-184 649.8 479 68.1
AUR62042779 Chenopodium quinoa HOM05D000718 ORTHO05D007431 2.6e-184 649.0 475 68.6
Gohir.A01G054400 Gossypium hirsutum HOM05D000718 ORTHO05D007431 2.6e-184 649.0 463 68.7
Hund02254 Selenicereus undatus HOM05D000718 ORTHO05D007431 4.5e-184 648.3 460 70.7
Gorai.002G054700 Gossypium raimondii HOM05D000718 ORTHO05D007431 1.0e-183 647.1 463 68.3
Aa31LG8G2120 Aethionema arabicum HOM05D000718 ORTHO05D007431 1.7e-183 646.4 455 69.7
CAN.G375.14 Capsicum annuum HOM05D000718 ORTHO05D007431 1.7e-183 646.4 462 68.4
Gohir.D01G042724 Gossypium hirsutum HOM05D000718 ORTHO05D007431 2.9e-183 645.6 463 68.0
Oeu025333.1 Olea europaea HOM05D000718 ORTHO05D007431 1.1e-182 643.7 465 69.0
Migut.H01998 Erythranthe guttata HOM05D000718 ORTHO05D007431 3.2e-182 642.1 470 68.5
SalBow7G4178 Salvia bowleyana HOM05D000718 ORTHO05D007431 8.0e-181 637.5 469 68.7
SalBow7G4376 Salvia bowleyana HOM05D000718 ORTHO05D007431 1.0e-180 637.1 469 68.7
MBI07_g09566_MAGBIO Magnolia biondii HOM05D000718 ORTHO05D007431 1.3e-178 630.2 517 62.5
SGA_v2.0_scaffold130G34293 Striga asiatica HOM05D000718 ORTHO05D007431 1.4e-177 626.7 459 68.2
PSO782G3001 Papaver somniferum HOM05D000718 ORTHO05D007431 1.8e-177 626.3 466 67.0
PSO478G1672 Papaver somniferum HOM05D000718 ORTHO05D007431 9.1e-177 624.0 466 66.7
HanXRQChr15g0476211 Helianthus annuus HOM05D000718 ORTHO05D007431 1.3e-175 620.2 462 66.7
Aqoxy4G00321 Aquilegia oxysepala HOM05D000718 ORTHO05D007431 1.5e-174 616.7 470 64.7
CSS0021542 Camellia sinensis var. sinensis HOM05D000718 ORTHO05D007431 2.5e-174 615.9 465 67.5
Nn1g04439 Nelumbo nucifera HOM05D000718 ORTHO05D007431 2.5e-174 615.9 429 69.9
Nn1g09174 Nelumbo nucifera HOM05D000718 ORTHO05D007431 4.2e-174 615.1 462 66.7
ECA240G1747 Erigeron canadensis HOM05D000718 ORTHO05D007431 3.6e-173 612.1 451 66.1
C05p52240 Brassica napus HOM05D000718 ORTHO05D007431 1.0e-172 610.5 426 70.0
Lsat_1_v5_gn_9_99900 Lactuca sativa HOM05D000718 ORTHO05D007431 5.7e-171 604.7 460 65.9
CDE04G1093 Ceratophyllum demersum HOM05D000718 ORTHO05D007431 1.0e-167 594.0 455 63.7
Manes.03G101200 Manihot esculenta HOM05D000718 ORTHO05D007431 1.5e-166 590.1 403 71.0
FAN21G3716 Fragaria x ananassa HOM05D000718 ORTHO05D007431 1.4e-164 583.6 401 70.6
CSS0043856 Camellia sinensis var. sinensis HOM05D000718 ORTHO05D007431 2.6e-163 579.3 463 62.9
vmacro11939 Vaccinium macrocarpon HOM05D000718 ORTHO05D007431 8.0e-157 557.8 475 61.7
ATR0602G196 Amborella trichopoda HOM05D000718 ORTHO05D007431 1.0e-156 557.4 461 60.3
AUR62019575 Chenopodium quinoa HOM05D000718 ORTHO05D007431 2.0e-155 553.1 429 65.0
CSS0014195 Camellia sinensis var. sinensis HOM05D000718 ORTHO05D007431 2.1e-149 533.1 463 60.5
unitig_52.g17395 Utricularia gibba HOM05D000718 ORTHO05D007431 1.5e-142 510.4 468 57.3
HPP92_023429 Vanilla planifolia HOM05D000718 ORTHO05D007431 1.5e-142 510.4 466 56.7
Ciclev10021305m.g Citrus clementina HOM05D000718 ORTHO05D007431 7.3e-142 508.1 312 79.8
Os09g0315800 Oryza sativa ssp. japonica HOM05D000718 ORTHO05D007431 6.8e-140 501.5 474 57.4
SEGI_16322 Sequoiadendron giganteum HOM05D000718 ORTHO05D007431 3.2e-129 466.1 452 51.8
Zm00001eb309730 Zea mays HOM05D000718 ORTHO05D007431 5.1e-127 458.8 342 66.4
unitig_26.g9517 Utricularia gibba HOM05D005139 ORTHO05D006125 4.7e-125 452.2 425 58.6
MD11G1263600 Malus domestica HOM05D000718 ORTHO05D007431 1.7e-119 433.7 285 72.6
Sc16g0007570 Simmondsia chinensis HOM05D000718 ORTHO05D007431 3.1e-116 422.9 303 70.3
CsaV3_4G033110 Cucumis sativus L. HOM05D000718 ORTHO05D007431 1.5e-107 394.0 305 64.6
Psat3g077000 Pisum sativum HOM05D000718 ORTHO05D007431 3.2e-105 386.3 254 78.7
vmacro11937 Vaccinium macrocarpon HOM05D000718 ORTHO05D007431 2.7e-104 383.3 333 61.9
Psat4g090840 Pisum sativum HOM05D000718 ORTHO05D007431 2.9e-98 363.2 259 76.8
vmacro23384 Vaccinium macrocarpon HOM05D000718 ORTHO05D007431 9.3e-97 358.2 351 56.1
SHI27609 Sapria himalayana HOM05D000718 ORTHO05D007431 1.3e-93 347.8 410 46.6
AagrBONN_evm.TU.Sc2ySwM_228.1801 Anthoceros agrestis HOM05D000718 ORTHO05D007431 4.8e-93 345.9 457 42.2
BcaB06g29518 Brassica carinata HOM05D000718 ORTHO05D002712 1.2e-88 331.3 459 46.6
SMO367G0522 Selaginella moellendorffii HOM05D000718 ORTHO05D007431 1.8e-87 327.4 459 40.5
Thecc.07G114700 Theobroma cacao HOM05D000718 ORTHO05D007431 3.9e-87 326.2 384 49.7
Pp3c4_25540 Physcomitrium patens HOM05D000718 ORTHO05D007431 7.4e-86 322.0 470 40.2
Mapoly0061s0004 Marchantia polymorpha HOM05D000718 ORTHO05D007431 5.0e-82 309.3 453 37.5
Sp3g13120 Schrenkiella parvula HOM05D000718 ORTHO05D007431 1.7e-77 294.3 225 59.1
vmacro11938 Vaccinium macrocarpon HOM05D000718 ORTHO05D007431 6.9e-76 288.9 305 52.5
MSTRG.14233 Avicennia marina HOM05D000718 ORTHO05D007431 1.1e-68 265.0 234 57.3
Sc16g0007580 Simmondsia chinensis HOM05D000718 ORTHO05D007431 4.4e-54 216.5 162 62.3
Thecc.07G115900 Theobroma cacao HOM05D000718 ORTHO05D007431 8.8e-47 192.2 165 55.8
Hund02252 Selenicereus undatus HOM05D000718 ORTHO05D007431 7.5e-46 189.1 162 67.9
MD11G1263700 Malus domestica HOM05D000718 ORTHO05D007431 6.8e-39 166.0 122 66.4
Psat2g113040 Pisum sativum HOM05D000718 ORTHO05D004709 2.4e-36 157.5 102 81.4
PGSC0003DMG400011947 Solanum tuberosum HOM05D000718 ORTHO05D007431 2.4e-36 157.5 119 63.0
TAR627G0847 Trochodendron aralioides HOM05D000718 ORTHO05D007431 5.4e-36 156.4 127 62.2
Cpa.g.sc77.7 Carica papaya HOM05D000718 ORTHO05D007431 2.3e-31 141.0 110 61.8
Thecc.07G115200 Theobroma cacao HOM05D000718 ORTHO05D007431 2.6e-30 137.5 127 52.8
CBR_g49411 Chara braunii HOM05D000019 ORTHO05D000353 1.1e-23 115.5 411 28.0
CAN.G713.20 Capsicum annuum HOM05D000718 ORTHO05D007431 1.3e-18 98.6 86 52.3
Thecc.07G113800 Theobroma cacao HOM05D000718 ORTHO05D007431 1.4e-15 88.6 63 68.3
Thecc.07G114100 Theobroma cacao HOM05D000718 ORTHO05D007431 1.5e-14 85.1 57 78.9
Thecc.07G114000 Theobroma cacao HOM05D000718 ORTHO05D007431 4.9e-13 80.1 101 41.6
Lsat_1_v5_gn_9_99920 Lactuca sativa HOM05D000718 ORTHO05D007431 4.0e-07 60.5 54 61.1


User provided reference genes

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