Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G16411 Trifolium pratense HOM05D006179 ORTHO05D008370 1.8e-162 575.9 290 100.0
Medtr5g089330 Medicago truncatula HOM05D006179 ORTHO05D008370 1.5e-140 503.1 293 84.6
Psat2g020720 Pisum sativum HOM05D006179 ORTHO05D008370 3.6e-139 498.4 293 84.0
LjContig00564g0004002 Lotus japonicus HOM05D006179 ORTHO05D008370 3.3e-124 448.7 293 77.8
TPR.G16393 Trifolium pratense HOM05D006179 ORTHO05D008370 6.9e-122 441.0 293 77.8
Glyma.02G279000 Glycine max HOM05D006179 ORTHO05D008370 2.9e-120 435.6 295 76.3
Glyma.14G035700 Glycine max HOM05D006179 ORTHO05D008370 7.1e-119 431.0 297 75.1
Phvul.008G201800 Phaseolus vulgaris HOM05D006179 ORTHO05D008370 1.5e-116 423.3 297 73.4
VMungo0647G1137 Vigna mungo HOM05D006179 ORTHO05D008370 6.2e-115 417.9 289 73.4
Ca_06199_v3 Cicer arietinum L. HOM05D006179 ORTHO05D008370 2.9e-112 409.1 218 88.5
Lalb_Chr04g0249261 Lupinus albus HOM05D006179 ORTHO05D008370 1.6e-110 403.3 298 72.1
arahy.Tifrunner.gnm1.ann1.66DN5N Arachis hypogaea HOM05D006179 ORTHO05D008370 2.7e-110 402.5 257 77.8
arahy.Tifrunner.gnm1.ann1.0RM1GA Arachis hypogaea HOM05D006179 ORTHO05D008370 1.1e-108 397.1 263 76.4
Potri.009G069300 Populus trichocarpa HOM05D006179 ORTHO05D008370 6.3e-107 391.3 284 70.1
Cfa009884 Carpinus fangiana HOM05D006179 ORTHO05D008370 1.4e-106 390.2 279 70.3
Hma1.2p1_0470F.1_g159226 Hydrangea macrophylla HOM05D006179 ORTHO05D008370 1.8e-106 389.8 224 80.8
Nitab4.5_0001290g0120 Nicotiana tabacum HOM05D006179 ORTHO05D008370 3.1e-106 389.0 221 83.3
PGSC0003DMG401004716 Solanum tuberosum HOM05D006179 ORTHO05D008370 9.0e-106 387.5 222 81.1
Atru.chr3.2957 Acer truncatum HOM05D006179 ORTHO05D008370 1.5e-105 386.7 291 67.0
Gohir.A07G121100 Gossypium hirsutum HOM05D006179 ORTHO05D008370 2.0e-105 386.3 234 78.2
COL.COLO4_24491 Corchorus olitorius HOM05D006179 ORTHO05D008370 3.4e-105 385.6 280 67.5
GSVIVG01037292001 Vitis vinifera HOM05D006179 ORTHO05D008370 7.6e-105 384.4 302 66.2
Gohir.D07G125300 Gossypium hirsutum HOM05D006179 ORTHO05D008370 1.3e-104 383.6 233 77.7
QL01p016926 Quercus lobata HOM05D006179 ORTHO05D008370 1.7e-104 383.3 279 69.2
Oeu061700.1 Olea europaea HOM05D006179 ORTHO05D008370 2.9e-104 382.5 224 81.2
Sopen12g034430 Solanum pennellii HOM05D006179 ORTHO05D008370 2.9e-104 382.5 307 63.2
PGR119G2402 Punica granatum HOM05D006179 ORTHO05D008370 3.8e-104 382.1 257 72.8
Solyc12g099800.2 Solanum lycopersicum HOM05D006179 ORTHO05D008370 6.5e-104 381.3 307 62.5
CSS0020940 Camellia sinensis var. sinensis HOM05D006179 ORTHO05D008370 1.4e-103 380.2 238 76.9
CiPaw.14G111900 Carya illinoinensis HOM05D006179 ORTHO05D008370 1.4e-103 380.2 282 68.4
MD11G1184200 Malus domestica HOM05D006179 ORTHO05D008370 4.2e-103 378.6 275 68.0
Migut.D00669 Erythranthe guttata HOM05D006179 ORTHO05D008370 9.3e-103 377.5 284 68.7
CANSAT54G1770 Cannabis sativa HOM05D006179 ORTHO05D008370 1.6e-102 376.7 301 66.4
vmacro14276 Vaccinium macrocarpon HOM05D006179 ORTHO05D008370 2.7e-102 375.9 287 66.9
PSO339G0647 Papaver somniferum HOM05D006179 ORTHO05D008370 3.6e-102 375.6 279 68.8
PSO384G2846 Papaver somniferum HOM05D006179 ORTHO05D008370 3.6e-102 375.6 267 69.7
Lj2C622G16 Lonicera japonica HOM05D006179 ORTHO05D008370 7.9e-102 374.4 294 64.6
Aqoxy1G00395 Aquilegia oxysepala HOM05D006179 ORTHO05D008370 1.0e-101 374.0 225 76.4
Rhsim01G0195300 Rhododendron simsii HOM05D006179 ORTHO05D008370 1.0e-101 374.0 299 64.2
SGA_v2.0_scaffold8G04541 Striga asiatica HOM05D006179 ORTHO05D008370 1.3e-101 373.6 281 67.6
HanXRQChr13g0390131 Helianthus annuus HOM05D006179 ORTHO05D008370 1.8e-101 373.2 224 76.8
FAN25G1664 Fragaria x ananassa HOM05D006179 ORTHO05D008370 1.5e-100 370.2 295 66.1
RcHm_v2.0_Chr5g0050451 Rosa chinensis HOM05D006179 ORTHO05D008370 2.5e-100 369.4 304 63.5
SalBow6G4024 Salvia bowleyana HOM05D006179 ORTHO05D008370 2.5e-100 369.4 303 63.7
Hund21973 Selenicereus undatus HOM05D006179 ORTHO05D008370 2.5e-100 369.4 266 68.4
Ah.04g159740 Amaranthus hybridus HOM05D006179 ORTHO05D008370 4.3e-100 368.6 218 78.0
AUR62000204 Chenopodium quinoa HOM05D006179 ORTHO05D008370 4.3e-100 368.6 220 75.5
TWI31G1173 Tripterygium wilfordii HOM05D006179 ORTHO05D008370 4.3e-100 368.6 306 64.4
Haze_23248 Corylus avellana HOM05D006179 ORTHO05D008370 7.4e-100 367.9 271 66.8
FvH4_3g27810 Fragaria vesca HOM05D006179 ORTHO05D008370 7.4e-100 367.9 293 66.2
TAR623G0610 Trochodendron aralioides HOM05D006179 ORTHO05D008370 1.3e-99 367.1 266 68.8
ClCG02G022800 Citrullus lanatus HOM05D006179 ORTHO05D008370 1.6e-99 366.7 292 65.8
Cc00_g17410 Coffea canephora HOM05D006179 ORTHO05D008370 2.2e-99 366.3 234 75.2
Gorai.001G135100 Gossypium raimondii HOM05D006179 ORTHO05D008370 2.2e-99 366.3 232 75.0
EL10Ac4g10106 Beta vulgaris HOM05D006179 ORTHO05D008370 2.8e-99 365.9 299 62.2
TWI79G0794 Tripterygium wilfordii HOM05D006179 ORTHO05D008370 2.8e-99 365.9 283 68.2
Sed0005347 Sechium edule HOM05D006179 ORTHO05D008370 3.7e-99 365.5 238 73.5
Prupe.4G263800 Prunus persica HOM05D006179 ORTHO05D008370 8.2e-99 364.4 300 64.7
Nn2g14782 Nelumbo nucifera HOM05D006179 ORTHO05D008370 4.1e-98 362.1 233 73.8
Sc16g0011000 Simmondsia chinensis HOM05D006179 ORTHO05D008370 4.1e-98 362.1 225 74.7
CAN.G1305.17 Capsicum annuum HOM05D006179 ORTHO05D008370 5.3e-98 361.7 226 76.5
Sabra09G0052200 Salix brachista HOM05D006179 ORTHO05D008370 9.0e-98 360.9 331 60.1
AUR62006552 Chenopodium quinoa HOM05D006179 ORTHO05D008370 2.6e-97 359.4 231 71.0
Thecc.09G246900 Theobroma cacao HOM05D006179 ORTHO05D008370 1.3e-96 357.1 339 56.3
Peaxi162Scf00272g00828 Petunia axillaris HOM05D006179 ORTHO05D008370 2.9e-96 355.9 201 81.6
CDE02G1620 Ceratophyllum demersum HOM05D006179 ORTHO05D008370 4.2e-95 352.1 264 66.7
unitig_62.g23875 Utricularia gibba HOM05D006179 ORTHO05D008370 5.5e-95 351.7 223 74.0
ATR0621G006 Amborella trichopoda HOM05D006179 ORTHO05D008370 9.4e-95 350.9 225 72.4
Cpa.g.sc157.57 Carica papaya HOM05D006179 ORTHO05D008370 6.1e-94 348.2 279 63.1
Nn7g36750 Nelumbo nucifera HOM05D006179 ORTHO05D008370 6.1e-94 348.2 225 73.8
Zm00001eb331180 Zea mays HOM05D006179 ORTHO05D008370 6.1e-94 348.2 209 76.1
Duzib170G0239 Durio zibethinus HOM05D006179 ORTHO05D008370 2.3e-93 346.3 280 63.9
Os07g0687500 Oryza sativa ssp. japonica HOM05D006179 ORTHO05D008370 2.6e-92 342.8 280 62.5
Atru.chr3.2952 Acer truncatum HOM05D006179 ORTHO05D008370 1.7e-91 340.1 264 66.7
FAN11G2659 Fragaria x ananassa HOM05D000059 ORTHO05D008370 2.2e-88 329.7 266 66.9
FAN21G1036 Fragaria x ananassa HOM05D006179 ORTHO05D008370 5.0e-88 328.6 310 60.0
CARHR193590 Cardamine hirsuta HOM05D006179 ORTHO05D008370 3.2e-87 325.9 240 65.4
DCAR_024400 Daucus carota HOM05D006179 ORTHO05D008370 7.2e-87 324.7 223 70.9
Lsat_1_v5_gn_5_65341 Lactuca sativa HOM05D006179 ORTHO05D008370 9.4e-87 324.3 240 67.1
THA.LOC104811194 Tarenaya hassleriana HOM05D006179 ORTHO05D008370 7.9e-86 321.2 283 59.0
A03p09460 Brassica napus HOM05D006179 ORTHO05D008370 3.0e-85 319.3 301 55.5
BolC3t13573H Brassica oleracea HOM05D006179 ORTHO05D008370 3.0e-85 319.3 239 64.9
BraA03t10264Z Brassica rapa HOM05D006179 ORTHO05D008370 3.0e-85 319.3 301 55.5
C03p11040 Brassica napus HOM05D006179 ORTHO05D008370 3.9e-85 318.9 239 64.9
Aa31LG1G8830 Aethionema arabicum HOM05D006179 ORTHO05D008370 4.4e-84 315.5 279 59.1
Thhalv10014227m.g Eutrema salsugineum HOM05D006179 ORTHO05D008370 4.4e-84 315.5 241 64.7
BcaB01g04864 Brassica carinata HOM05D006179 ORTHO05D008370 7.4e-84 314.7 278 58.3
Nitab4.5_0002310g0120 Nicotiana tabacum HOM05D006179 ORTHO05D008370 1.3e-83 313.9 226 70.4
Sp6g25040 Schrenkiella parvula HOM05D006179 ORTHO05D008370 3.7e-83 312.4 241 64.3
AL6G30860 Arabidopsis lyrata HOM05D006179 ORTHO05D008370 1.1e-82 310.8 240 63.3
BcaC03g13669 Brassica carinata HOM05D006179 ORTHO05D008370 1.2e-81 307.4 280 57.9
AT5G19370 Arabidopsis thaliana HOM05D006179 ORTHO05D008370 2.6e-81 306.2 241 62.2
A02p05510 Brassica napus HOM05D006179 ORTHO05D008370 2.6e-81 306.2 240 62.5
SMO145G0007 Selaginella moellendorffii HOM05D006179 ORTHO05D008370 1.3e-80 303.9 228 63.2
HPP92_028459 Vanilla planifolia HOM05D006179 ORTHO05D008370 5.0e-80 302.0 182 74.7
Carub.0006s1771 Capsella rubella HOM05D006179 ORTHO05D008370 1.1e-79 300.8 249 60.2
Mapoly0003s0043 Marchantia polymorpha HOM05D006179 ORTHO05D008370 7.2e-79 298.1 228 61.8
BraA02t05502Z Brassica rapa HOM05D006179 ORTHO05D008370 2.1e-78 296.6 264 56.4
Pp3c3_13280 Physcomitrium patens HOM05D006179 ORTHO05D008370 2.1e-78 296.6 211 66.8
MELO3C014557.2 Cucumis melo HOM05D006179 ORTHO05D008370 3.6e-78 295.8 248 63.7
BNapus_Darmor_BZH_scaffold_38p02550 Brassica napus HOM05D006179 ORTHO05D008370 2.0e-76 290.0 271 56.8
CsaV3_6G038930 Cucumis sativus L. HOM05D006179 ORTHO05D008370 2.8e-75 286.2 229 66.4
AagrBONN_evm.TU.Sc2ySwM_117.3174 Anthoceros agrestis HOM05D006179 ORTHO05D008370 1.2e-73 280.8 225 60.4
Eucgr.J00687 Eucalyptus grandis HOM05D006179 ORTHO05D008370 1.7e-72 276.9 151 82.8
Ciclev10017644m.g Citrus clementina HOM05D006179 ORTHO05D008370 6.5e-72 275.0 151 82.1
BcaB01g05143 Brassica carinata HOM05D006179 ORTHO05D008370 5.5e-71 271.9 179 69.3
CBR_g54969 Chara braunii HOM05D006179 ORTHO05D008370 1.2e-68 264.2 250 55.6
ECA233G4787 Erigeron canadensis HOM05D006179 ORTHO05D008370 1.9e-63 246.9 143 79.0
Dinv36157 Davidia involucrata HOM05D006179 ORTHO05D008370 2.3e-61 240.0 222 62.6
Peaxi162Scf00174g00223 Petunia axillaris HOM05D006179 ORTHO05D008370 9.8e-60 234.6 196 61.7
Manes.02G138400 Manihot esculenta HOM05D006179 ORTHO05D008370 4.9e-59 232.3 209 61.7
SEGI_16296 Sequoiadendron giganteum HOM05D006179 ORTHO05D008370 8.6e-56 221.5 153 68.0
AUR62040469 Chenopodium quinoa HOM05D006179 ORTHO05D008370 3.3e-55 219.5 142 71.8
Hund21974 Selenicereus undatus HOM05D006179 ORTHO05D008240 9.5e-55 218.0 143 73.4
AUR62037598 Chenopodium quinoa HOM05D006179 ORTHO05D007344 4.6e-49 199.1 140 69.3
AUR62042212 Chenopodium quinoa HOM05D006179 ORTHO05D008370 2.7e-41 173.3 146 61.0
Cre07.g350400 Chlamydomonas reinhardtii HOM05D006179 ORTHO05D008370 2.1e-38 163.7 178 38.2
MCO13G336 Micromonas commoda HOM05D006179 ORTHO05D008370 1.2e-33 147.9 202 40.1
SalBow6G2129 Salvia bowleyana HOM05D006179 ORTHO05D353266 3.5e-33 146.4 158 56.3
CSS0040024 Camellia sinensis var. sinensis HOM05D006179 ORTHO05D008370 4.0e-21 106.3 62 79.0
CSS0040434 Camellia sinensis var. sinensis HOM05D006179 ORTHO05D008370 2.9e-19 100.1 137 44.5
QL02p019212 Quercus lobata HOM05D006179 ORTHO05D008370 6.0e-09 65.9 36 75.0
MD11G1211400 Malus domestica HOM05D004980 ORTHO05D006505 5.1e-08 62.8 114 31.6
MCO16G521 Micromonas commoda HOM05D005637 ORTHO05D006983 8.7e-08 62.0 103 39.8
MD03G1195100 Malus domestica HOM05D004980 ORTHO05D006505 1.1e-07 61.6 114 31.6
Haze_26617 Corylus avellana HOM05D006179 ORTHO05D164269 3.3e-07 60.1 143 32.2
arahy.Tifrunner.gnm1.ann1.C5REQA Arachis hypogaea HOM05D004980 ORTHO05D006505 4.3e-07 59.7 100 32.0
Ca_06343_v3 Cicer arietinum L. HOM05D004980 ORTHO05D006505 4.3e-07 59.7 102 33.3
Prupe.4G221100 Prunus persica HOM05D004980 ORTHO05D006505 5.6e-07 59.3 114 31.6
CANSAT11G1616 Cannabis sativa HOM05D004980 ORTHO05D006505 7.4e-07 58.9 99 31.3
VMungo0647G0060 Vigna mungo HOM05D004980 ORTHO05D006505 7.4e-07 58.9 100 32.0
CSS0002819 Camellia sinensis var. sinensis HOM05D004980 ORTHO05D006505 9.6e-07 58.5 100 32.0
Cpa.g.sc12.256 Carica papaya HOM05D004980 ORTHO05D006505 9.6e-07 58.5 101 31.7
Sabra16G0233900 Salix brachista HOM05D004980 ORTHO05D006505 9.6e-07 58.5 105 31.4
Psat2g012600 Pisum sativum HOM05D004980 ORTHO05D006505 1.3e-06 58.2 95 31.6
LjContig00272g0012473 Lotus japonicus HOM05D004980 ORTHO05D006505 1.6e-06 57.8 97 32.0
Manes.03G132700 Manihot esculenta HOM05D004980 ORTHO05D006505 1.6e-06 57.8 101 30.7
Migut.N00646 Erythranthe guttata HOM05D004980 ORTHO05D006505 2.8e-06 57.0 118 28.8
FAN16G1125 Fragaria x ananassa HOM05D004980 ORTHO05D006505 2.8e-06 57.0 101 33.7
arahy.Tifrunner.gnm1.ann1.45FXM1 Arachis hypogaea HOM05D004980 ORTHO05D006505 3.7e-06 56.6 101 33.7
Phvul.008G270700 Phaseolus vulgaris HOM05D004980 ORTHO05D006505 3.7e-06 56.6 102 32.4
FAN21G0499 Fragaria x ananassa HOM05D004980 ORTHO05D006505 4.8e-06 56.2 97 33.0
FAN25G0097 Fragaria x ananassa HOM05D004980 ORTHO05D006505 4.8e-06 56.2 97 33.0
Lalb_Chr17g0348661 Lupinus albus HOM05D004980 ORTHO05D006505 4.8e-06 56.2 102 30.4
Medtr5g093580 Medicago truncatula HOM05D004980 ORTHO05D006505 4.8e-06 56.2 102 31.4
Potri.001G355800 Populus trichocarpa HOM05D004980 ORTHO05D006505 4.8e-06 56.2 101 31.7
RcHm_v2.0_Chr5g0041141 Rosa chinensis HOM05D004980 ORTHO05D006505 4.8e-06 56.2 97 33.0
TPR.G1188 Trifolium pratense HOM05D004980 ORTHO05D006505 4.8e-06 56.2 101 31.7
TAR624G0219 Trochodendron aralioides HOM05D004980 ORTHO05D006505 4.8e-06 56.2 101 29.7
FvH4_3g23360 Fragaria vesca HOM05D004980 ORTHO05D006505 6.2e-06 55.8 110 31.8
FAN11G2764 Fragaria x ananassa HOM05D004980 ORTHO05D006505 6.2e-06 55.8 110 31.8
HanXRQChr05g0159781 Helianthus annuus HOM05D004980 ORTHO05D006505 6.2e-06 55.8 101 32.7
TPR.G4803 Trifolium pratense HOM05D004980 ORTHO05D006505 6.2e-06 55.8 101 31.7
TAR626G1444 Trochodendron aralioides HOM05D004980 ORTHO05D006505 6.2e-06 55.8 114 28.9
Actinidia05071 Actinidia chinensis HOM05D004980 ORTHO05D006505 8.1e-06 55.5 98 30.6
Carub.0008s1543 Capsella rubella HOM05D004980 ORTHO05D006505 8.1e-06 55.5 148 24.3


User provided reference genes

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