Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G16394 Trifolium pratense HOM05D005072 ORTHO05D006209 0.0e+00 1158.3 591 100.0
Ca_06178_v3 Cicer arietinum L. HOM05D005072 ORTHO05D006209 8.1e-303 1043.1 591 89.8
Medtr5g088780 Medicago truncatula HOM05D005072 ORTHO05D006209 1.5e-296 1022.3 591 88.3
Psat0s680g0080 Pisum sativum HOM05D005072 ORTHO05D006209 3.9e-289 997.7 591 85.4
Glyma.02G277200 Glycine max HOM05D005072 ORTHO05D006209 1.5e-253 879.4 586 76.1
Lalb_Chr10g0106071 Lupinus albus HOM05D005072 ORTHO05D006209 3.4e-253 878.2 589 76.7
Glyma.14G038000 Glycine max HOM05D005072 ORTHO05D006209 1.2e-250 869.8 586 75.4
Phvul.008G203700 Phaseolus vulgaris HOM05D005072 ORTHO05D006209 6.7e-249 864.0 591 73.4
LjContig00564g0010958 Lotus japonicus HOM05D005072 ORTHO05D006209 4.4e-240 834.7 591 74.6
arahy.Tifrunner.gnm1.ann1.BCWF2K Arachis hypogaea HOM05D005072 ORTHO05D006209 5.3e-238 827.8 589 71.3
Dinv24604 Davidia involucrata HOM05D005072 ORTHO05D006209 1.9e-235 819.3 594 70.7
arahy.Tifrunner.gnm1.ann1.2SU3A5 Arachis hypogaea HOM05D005072 ORTHO05D006209 6.1e-234 814.3 619 67.7
Cfa010164 Carpinus fangiana HOM05D005072 ORTHO05D006209 1.8e-233 812.8 598 69.1
Prupe.4G269200 Prunus persica HOM05D005072 ORTHO05D006209 8.8e-233 810.4 594 68.0
Atru.chr3.2833 Acer truncatum HOM05D005072 ORTHO05D006209 1.1e-232 810.1 586 69.5
Ciclev10014694m.g Citrus clementina HOM05D005072 ORTHO05D006209 6.3e-231 804.3 589 69.3
Hma1.2p1_1843F.1_g305080 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 2.0e-229 799.3 594 68.7
TWI79G0414 Tripterygium wilfordii HOM05D005072 ORTHO05D006209 7.7e-229 797.3 593 68.0
Thecc.09G251600 Theobroma cacao HOM05D005072 ORTHO05D006209 3.2e-227 792.0 598 67.7
Gohir.A08G009400 Gossypium hirsutum HOM05D005072 ORTHO05D006209 5.2e-225 784.6 597 66.2
Gohir.D08G019500 Gossypium hirsutum HOM05D005072 ORTHO05D006209 5.2e-225 784.6 597 66.2
MD03G1163400 Malus domestica HOM05D005072 ORTHO05D006209 1.2e-224 783.5 600 67.3
Gorai.004G014000 Gossypium raimondii HOM05D005072 ORTHO05D006209 2.0e-224 782.7 597 65.8
TAR623G1264 Trochodendron aralioides HOM05D005072 ORTHO05D006209 1.3e-223 780.0 591 68.0
vmacro14280 Vaccinium macrocarpon HOM05D005072 ORTHO05D006209 4.8e-223 778.1 597 65.8
GSVIVG01037391001 Vitis vinifera HOM05D005072 ORTHO05D006209 5.4e-222 774.6 615 66.2
Haze_23549 Corylus avellana HOM05D005072 ORTHO05D006209 7.0e-222 774.2 623 65.0
Migut.N02404 Erythranthe guttata HOM05D005072 ORTHO05D006209 7.7e-221 770.8 593 66.8
Potri.009G022200 Populus trichocarpa HOM05D005072 ORTHO05D006209 3.2e-219 765.4 597 64.2
Duzib170G0952 Durio zibethinus HOM05D005072 ORTHO05D006209 3.6e-218 761.9 597 65.0
CANSAT54G0197 Cannabis sativa HOM05D005072 ORTHO05D006209 4.7e-218 761.5 594 65.8
SGA_v2.0_scaffold16G07591 Striga asiatica HOM05D005072 ORTHO05D006209 1.4e-217 760.0 583 65.7
COL.COLO4_33262 Corchorus olitorius HOM05D005072 ORTHO05D006209 1.8e-217 759.6 597 65.0
RcHm_v2.0_Chr7g0190441 Rosa chinensis HOM05D005072 ORTHO05D006209 4.0e-217 758.4 590 65.6
FAN18G1184 Fragaria x ananassa HOM05D005072 ORTHO05D006209 7.5e-216 754.2 592 64.7
CiPaw.14G108700 Carya illinoinensis HOM05D005072 ORTHO05D006209 4.9e-215 751.5 513 72.5
HanXRQChr05g0144311 Helianthus annuus HOM05D005072 ORTHO05D006209 9.1e-214 747.3 584 64.7
FvH4_5g07960 Fragaria vesca HOM05D005072 ORTHO05D006209 7.7e-213 744.2 592 64.0
Cpa.g.sc34.205 Carica papaya HOM05D005072 ORTHO05D006209 1.3e-212 743.4 587 65.4
FAN13G0840 Fragaria x ananassa HOM05D005072 ORTHO05D006209 1.5e-211 740.0 592 63.7
Cc01_g07180 Coffea canephora HOM05D005072 ORTHO05D006209 1.9e-211 739.6 604 63.6
FAN04G1678 Fragaria x ananassa HOM05D005072 ORTHO05D006209 4.7e-210 734.9 592 63.3
CAN.G651.4 Capsicum annuum HOM05D005072 ORTHO05D006209 1.8e-209 733.0 573 65.1
Manes.02G135100 Manihot esculenta HOM05D005072 ORTHO05D006209 4.0e-209 731.9 517 70.0
Oeu032059.1 Olea europaea HOM05D005072 ORTHO05D006209 1.2e-208 730.3 595 63.4
Eucgr.B03761 Eucalyptus grandis HOM05D005072 ORTHO05D006209 7.5e-208 727.6 593 62.2
FAN08G0571 Fragaria x ananassa HOM05D005072 ORTHO05D006209 1.3e-207 726.9 592 62.8
Aqoxy2G00052 Aquilegia oxysepala HOM05D005072 ORTHO05D006209 2.9e-207 725.7 598 63.2
PSO675G4775 Papaver somniferum HOM05D005072 ORTHO05D006209 2.4e-206 722.6 556 66.4
Sopen01g004520 Solanum pennellii HOM05D005072 ORTHO05D006209 1.2e-205 720.3 592 63.5
PSO541G4749 Papaver somniferum HOM05D005072 ORTHO05D006209 4.6e-205 718.4 556 66.0
ECA238G1118 Erigeron canadensis HOM05D005072 ORTHO05D006209 7.8e-205 717.6 585 63.1
PGR102G1516 Punica granatum HOM05D005072 ORTHO05D006209 5.0e-204 714.9 590 61.9
Solyc01g009030.4 Solanum lycopersicum HOM05D005072 ORTHO05D006209 6.6e-204 714.5 592 63.0
Sp6g31350 Schrenkiella parvula HOM05D005072 ORTHO05D006209 1.1e-203 713.8 591 61.1
Nitab4.5_0002300g0060 Nicotiana tabacum HOM05D005072 ORTHO05D006209 3.3e-203 712.2 588 62.4
A02p01460 Brassica napus HOM05D005072 ORTHO05D006209 1.2e-202 710.3 575 61.7
C02p05680 Brassica napus HOM05D005072 ORTHO05D006209 2.1e-202 709.5 575 61.9
QL01p016041 Quercus lobata HOM05D005072 ORTHO05D006209 2.8e-202 709.1 784 51.1
MSTRG.12421 Avicennia marina HOM05D005072 ORTHO05D006209 4.7e-202 708.4 597 62.3
Carub.0006s1080 Capsella rubella HOM05D005072 ORTHO05D006209 4.7e-202 708.4 591 60.2
THA.LOC104799144 Tarenaya hassleriana HOM05D005072 ORTHO05D006209 2.3e-201 706.1 590 60.7
BraA02t05125Z Brassica rapa HOM05D005072 ORTHO05D006209 4.0e-201 705.3 583 60.9
AL6G23090 Arabidopsis lyrata HOM05D005072 ORTHO05D006209 6.8e-201 704.5 593 59.5
BolC2t06512H Brassica oleracea HOM05D005072 ORTHO05D006209 6.8e-201 704.5 583 61.1
CARHR200820 Cardamine hirsuta HOM05D005072 ORTHO05D006209 2.0e-200 703.0 591 59.6
A03p05510 Brassica napus HOM05D005072 ORTHO05D006209 2.2e-199 699.5 591 60.6
CsaV3_6G038680 Cucumis sativus L. HOM05D005072 ORTHO05D006209 2.2e-199 699.5 595 61.7
ClCG02G022550 Citrullus lanatus HOM05D005072 ORTHO05D006209 1.1e-198 697.2 599 61.4
Aa31LG3G14940 Aethionema arabicum HOM05D005072 ORTHO05D006209 1.4e-198 696.8 605 59.2
MELO3C014531.2 Cucumis melo HOM05D005072 ORTHO05D006209 1.9e-198 696.4 595 61.2
Thhalv10013024m.g Eutrema salsugineum HOM05D005072 ORTHO05D006209 1.9e-198 696.4 590 59.7
MBI13_g20755_MAGBIO Magnolia biondii HOM05D005072 ORTHO05D006209 1.3e-196 690.3 638 58.3
Hund21956 Selenicereus undatus HOM05D005072 ORTHO05D006209 1.1e-195 687.2 591 59.7
Nitab4.5_0000428g0060 Nicotiana tabacum HOM05D005072 ORTHO05D006209 1.9e-195 686.4 568 62.1
DCAR_023860 Daucus carota HOM05D005072 ORTHO05D006209 2.5e-195 686.0 513 65.5
BolC3t13149H Brassica oleracea HOM05D005072 ORTHO05D006209 5.6e-195 684.9 590 60.0
BraA03t09889Z Brassica rapa HOM05D005072 ORTHO05D006209 5.6e-195 684.9 593 59.0
C03p06430 Brassica napus HOM05D005072 ORTHO05D006209 7.3e-195 684.5 589 59.9
Lj1C290G6 Lonicera japonica HOM05D005072 ORTHO05D006209 1.8e-193 679.9 594 60.8
CSS0034993 Camellia sinensis var. sinensis HOM05D005072 ORTHO05D006209 6.8e-193 677.9 595 60.5
EL10Ac4g10071 Beta vulgaris HOM05D005072 ORTHO05D006209 7.5e-192 674.5 584 59.9
Lsat_1_v5_gn_2_36161 Lactuca sativa HOM05D005072 ORTHO05D006209 2.2e-191 672.9 534 62.4
Peaxi162Scf00050g02225 Petunia axillaris HOM05D005072 ORTHO05D006209 1.4e-185 653.7 577 60.1
SalBow3G4478 Salvia bowleyana HOM05D005072 ORTHO05D006209 1.0e-180 637.5 617 57.5
Sed0004908 Sechium edule HOM05D005072 ORTHO05D006209 1.2e-176 624.0 553 59.9
AT5G12290 Arabidopsis thaliana HOM05D005072 ORTHO05D006209 7.6e-176 621.3 516 61.4
Ah.04g159570 Amaranthus hybridus HOM05D005072 ORTHO05D006209 9.9e-176 620.9 578 57.3
AUR62006578 Chenopodium quinoa HOM05D005072 ORTHO05D006209 1.1e-174 617.5 591 54.1
CSS0024863 Camellia sinensis var. sinensis HOM05D005072 ORTHO05D006209 5.4e-174 615.1 555 59.6
Sc06g0004780 Simmondsia chinensis HOM05D005072 ORTHO05D006209 2.7e-173 612.8 488 63.1
AUR62000232 Chenopodium quinoa HOM05D005072 ORTHO05D006209 1.7e-172 610.1 616 53.1
BcaB01g05412 Brassica carinata HOM05D005072 ORTHO05D006209 4.8e-170 602.1 593 55.3
ATR0307G105 Amborella trichopoda HOM05D005072 ORTHO05D006209 1.1e-158 564.3 470 63.2
Actinidia38495 Actinidia chinensis HOM05D005072 ORTHO05D006209 1.9e-150 537.0 356 73.6
Zm00001eb017230 Zea mays HOM05D005072 ORTHO05D006209 7.9e-149 531.6 534 51.5
unitig_27.g25017 Utricularia gibba HOM05D005072 ORTHO05D006209 8.7e-140 501.5 612 46.7
Duzib168G1271 Durio zibethinus HOM05D005072 ORTHO05D006209 1.4e-121 441.0 382 57.6
Pp3c22_1870 Physcomitrium patens HOM05D005072 ORTHO05D006209 1.9e-118 430.6 545 43.5
SMO147G0386 Selaginella moellendorffii HOM05D005072 ORTHO05D006209 9.4e-118 428.3 502 45.4
HPP92_015601 Vanilla planifolia HOM05D005072 ORTHO05D006209 1.4e-116 424.5 303 68.3
Os03g0377500 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 1.1e-115 421.4 447 49.9
Mapoly0034s0093 Marchantia polymorpha HOM05D005072 ORTHO05D006209 7.0e-113 412.1 558 42.5
Pp3c3_6740 Physcomitrium patens HOM05D005072 ORTHO05D006209 6.5e-111 405.6 545 42.0
Lj1C297T8 Lonicera japonica HOM05D005072 ORTHO05D006209 2.3e-100 370.5 331 57.4
Glyma.14G037400 Glycine max HOM05D005072 ORTHO05D006209 1.6e-88 331.3 211 80.6
CDE07G0611 Ceratophyllum demersum HOM05D005072 ORTHO05D006209 1.1e-86 325.1 216 76.4
Actinidia29952 Actinidia chinensis HOM05D005072 ORTHO05D006209 6.6e-79 299.3 281 58.4
Nn7g36972 Nelumbo nucifera HOM05D005072 ORTHO05D006209 2.4e-73 280.8 341 45.7
CBR_g51661 Chara braunii HOM05D005072 ORTHO05D006209 3.0e-71 273.9 591 32.1
PGSC0003DMG403022702 Solanum tuberosum HOM05D005072 ORTHO05D006209 1.5e-70 271.6 178 78.1
Aqoxy279s001 Aquilegia oxysepala HOM05D005072 ORTHO05D006209 4.7e-69 266.5 292 52.1
AagrBONN_evm.TU.Sc2ySwM_117.924 Anthoceros agrestis HOM05D005072 ORTHO05D006209 1.5e-67 261.5 359 37.9
Os03g0377300 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 8.4e-66 255.8 291 44.0
Actinidia27132 Actinidia chinensis HOM05D005072 ORTHO05D006209 1.3e-50 205.3 170 61.8
Lj1A297G59 Lonicera japonica HOM05D005072 ORTHO05D006209 3.2e-41 174.1 112 72.3
SEGI_25760 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 4.6e-40 170.2 123 62.6
SEGI_30846 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 1.3e-37 162.2 115 73.0
ECA233G6112 Erigeron canadensis HOM05D005072 ORTHO05D006209 1.0e-31 142.5 248 36.7
Hma1.2p1_2592F.1_g325070 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 5.1e-31 140.2 112 61.6
Hma1.2p1_2592F.1_g325060 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 3.1e-28 131.0 102 66.7
VMungo1215G1729 Vigna mungo HOM05D005072 ORTHO05D006209 5.0e-26 123.6 80 72.5
VMungo1245G0001 Vigna mungo HOM05D005072 ORTHO05D006209 1.1e-25 122.5 82 70.7
VMungo1127G1498 Vigna mungo HOM05D005072 ORTHO05D006209 1.9e-25 121.7 80 71.2
Cre14.g610351 Chlamydomonas reinhardtii HOM05D005072 ORTHO05D006209 5.5e-25 120.2 372 28.0
Lsat_1_v5_gn_4_59101 Lactuca sativa HOM05D005072 ORTHO05D006209 6.1e-24 116.7 100 55.0
MCO07G292 Micromonas commoda HOM05D005072 ORTHO05D006209 6.1e-24 116.7 568 22.0
Os03g0356470 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 7.9e-24 116.3 178 36.5
AL340U10010 Arabidopsis lyrata HOM05D005072 ORTHO05D006209 1.8e-23 115.2 98 53.1
Nn001s41348 Nelumbo nucifera HOM05D005072 ORTHO05D006209 3.7e-21 107.5 71 70.4
Lsat_1_v5_gn_5_119240 Lactuca sativa HOM05D005072 ORTHO05D006209 5.3e-20 103.6 71 62.0
SEGI_31829 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 4.5e-19 100.5 129 41.9
arahy.Tifrunner.gnm1.ann1.ELE64U Arachis hypogaea HOM05D005072 ORTHO05D006209 1.8e-15 88.6 68 60.3
ECA248G3958 Erigeron canadensis HOM05D005072 ORTHO05D006209 1.7e-13 82.0 129 39.5
Glyma.09G128251 Glycine max HOM05D005072 ORTHO05D006209 1.8e-12 78.6 75 60.0
ECA233G4564 Erigeron canadensis HOM05D005072 ORTHO05D189103 4.1e-12 77.4 478 25.5
arahy.Tifrunner.gnm1.ann1.N4LM1Q Arachis hypogaea HOM05D005072 ORTHO05D007788 1.2e-11 75.9 58 67.2
SMO025G0001 Selaginella moellendorffii HOM05D012532 ORTHO05D006209 1.7e-10 72.0 138 36.2
Lsat_1_v5_gn_8_119321 Lactuca sativa HOM05D005072 ORTHO05D006209 1.9e-09 68.6 60 50.0
Cfa026272 Carpinus fangiana HOM05D005072 ORTHO05D126095 5.5e-09 67.0 238 24.8
Lsat_1_v5_gn_4_56401 Lactuca sativa HOM05D005072 ORTHO05D006209 5.5e-09 67.0 50 58.0
Oeu032057.1 Olea europaea HOM05D005072 ORTHO05D006209 1.6e-08 65.5 166 33.1
arahy.Tifrunner.gnm1.ann1.BVT45G Arachis hypogaea HOM05D005549 ORTHO05D006771 5.7e-06 57.0 33 78.8


User provided reference genes

Program Settings