Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G16308 Trifolium pratense HOM05D003973 ORTHO05D004679 0.0e+00 1764.6 866 100.0
Medtr7g096680 Medicago truncatula HOM05D003973 ORTHO05D004679 0.0e+00 1560.0 893 86.7
Psat3g058480 Pisum sativum HOM05D003973 ORTHO05D004679 0.0e+00 1534.6 934 81.8
Lj1g0003934 Lotus japonicus HOM05D003973 ORTHO05D004679 0.0e+00 1416.4 867 82.6
Glyma.03G162100 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1409.4 873 81.9
VMungo1383G0117 Vigna mungo HOM05D003973 ORTHO05D004679 0.0e+00 1393.3 857 81.3
Phvul.001G159900 Phaseolus vulgaris HOM05D003973 ORTHO05D004679 0.0e+00 1387.5 858 81.7
Lalb_Chr06g0170381 Lupinus albus HOM05D003973 ORTHO05D004679 0.0e+00 1372.5 870 79.5
Glyma.19G163500 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1369.8 873 80.2
arahy.Tifrunner.gnm1.ann1.M1CRL2 Arachis hypogaea HOM05D003973 ORTHO05D004679 0.0e+00 1358.2 872 77.4
Ca_09689_v3 Cicer arietinum L. HOM05D003973 ORTHO05D004679 0.0e+00 1355.5 894 77.5
Glyma.10G035800 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1354.7 868 77.6
Glyma.13G122200 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1351.7 872 77.1
Lj5g0017930 Lotus japonicus HOM05D003973 ORTHO05D004679 0.0e+00 1350.1 867 77.9
Lalb_Chr02g0152311 Lupinus albus HOM05D003973 ORTHO05D004679 0.0e+00 1345.5 870 78.7
Medtr1g070160 Medicago truncatula HOM05D003973 ORTHO05D004679 0.0e+00 1345.1 869 77.6
arahy.Tifrunner.gnm1.ann1.0L9E2L Arachis hypogaea HOM05D003973 ORTHO05D004679 0.0e+00 1343.6 893 75.3
TPR.G3551 Trifolium pratense HOM05D003973 ORTHO05D004679 0.0e+00 1315.4 874 76.3
Manes.12G031400 Manihot esculenta HOM05D003973 ORTHO05D004679 0.0e+00 1284.6 862 75.3
arahy.Tifrunner.gnm1.ann1.B4WKJK Arachis hypogaea HOM05D003973 ORTHO05D004679 0.0e+00 1282.3 867 74.7
arahy.Tifrunner.gnm1.ann1.61T5XF Arachis hypogaea HOM05D003973 ORTHO05D004679 0.0e+00 1277.3 868 74.7
Hma1.2p1_0621F.1_g190820 Hydrangea macrophylla HOM05D003973 ORTHO05D004679 0.0e+00 1255.4 871 72.9
Thecc.01G260300 Theobroma cacao HOM05D003973 ORTHO05D004679 0.0e+00 1255.4 871 73.1
Haze_24609 Corylus avellana HOM05D003973 ORTHO05D004679 0.0e+00 1255.0 911 70.8
Atru.chr5.1648 Acer truncatum HOM05D003973 ORTHO05D004679 0.0e+00 1254.2 901 70.3
Ciclev10018809m.g Citrus clementina HOM05D003973 ORTHO05D004679 0.0e+00 1245.3 874 72.0
Actinidia12891 Actinidia chinensis HOM05D003973 ORTHO05D004679 0.0e+00 1232.2 868 72.0
TWI18G0068 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 0.0e+00 1231.5 876 71.7
TWI12G0927 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 0.0e+00 1230.7 873 71.9
Cpa.g.sc50.33 Carica papaya HOM05D003973 ORTHO05D004679 0.0e+00 1228.8 869 72.0
CSS0019197 Camellia sinensis var. sinensis HOM05D003973 ORTHO05D004679 0.0e+00 1224.9 871 72.0
COL.COLO4_05173 Corchorus olitorius HOM05D003973 ORTHO05D004679 0.0e+00 1223.4 857 72.3
Gorai.004G072800 Gossypium raimondii HOM05D003973 ORTHO05D004679 0.0e+00 1222.2 873 71.8
TWI75G1776 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 0.0e+00 1221.5 961 65.8
CiPaw.03G262600 Carya illinoinensis HOM05D003973 ORTHO05D004679 0.0e+00 1220.3 842 73.5
Potri.002G039900 Populus trichocarpa HOM05D003973 ORTHO05D004679 0.0e+00 1219.5 878 71.4
MD05G1199600 Malus domestica HOM05D003973 ORTHO05D004679 0.0e+00 1212.6 889 70.4
Gorai.007G145200 Gossypium raimondii HOM05D003973 ORTHO05D004679 0.0e+00 1211.1 872 71.4
Gohir.A11G129900 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1209.5 872 71.2
Gohir.D11G135600 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1208.7 872 71.3
QL09p038243 Quercus lobata HOM05D003973 ORTHO05D004679 0.0e+00 1206.8 867 70.9
Potri.005G222800 Populus trichocarpa HOM05D003973 ORTHO05D004679 0.0e+00 1200.7 875 70.5
Sabra02G0032000 Salix brachista HOM05D003973 ORTHO05D004679 0.0e+00 1198.7 866 71.1
Sabra05G0171500 Salix brachista HOM05D003973 ORTHO05D004679 0.0e+00 1198.7 894 68.6
Duzib138G0375 Durio zibethinus HOM05D003973 ORTHO05D004679 0.0e+00 1190.3 871 69.6
MD10G1185900 Malus domestica HOM05D003973 ORTHO05D004679 0.0e+00 1188.7 888 69.6
CANSAT01G0525 Cannabis sativa HOM05D003973 ORTHO05D004679 0.0e+00 1187.6 879 69.6
Dinv34610 Davidia involucrata HOM05D003973 ORTHO05D004679 0.0e+00 1182.5 865 70.1
RcHm_v2.0_Chr6g0288391 Rosa chinensis HOM05D003973 ORTHO05D004679 0.0e+00 1180.2 888 68.8
PGR044G1639 Punica granatum HOM05D003973 ORTHO05D004679 0.0e+00 1171.8 900 67.6
Eucgr.B01536 Eucalyptus grandis HOM05D003973 ORTHO05D004679 0.0e+00 1169.1 874 68.9
Prupe.8G225400 Prunus persica HOM05D003973 ORTHO05D004679 0.0e+00 1167.9 872 68.9
Nn4g22928 Nelumbo nucifera HOM05D003973 ORTHO05D004679 0.0e+00 1164.4 877 68.4
FvH4_2g21710 Fragaria vesca HOM05D003973 ORTHO05D004679 0.0e+00 1162.9 889 67.7
FAN27G0583 Fragaria x ananassa HOM05D003973 ORTHO05D004679 0.0e+00 1159.8 890 67.5
TAR362G0234 Trochodendron aralioides HOM05D003973 ORTHO05D004679 0.0e+00 1156.0 876 68.5
FAN24G2194 Fragaria x ananassa HOM05D003973 ORTHO05D004679 0.0e+00 1152.5 913 65.9
FAN20G1573 Fragaria x ananassa HOM05D003973 ORTHO05D004679 0.0e+00 1151.3 890 67.5
Cc11_g02590 Coffea canephora HOM05D003973 ORTHO05D004679 0.0e+00 1151.0 854 68.3
Psat6g055320 Pisum sativum HOM05D003973 ORTHO05D004679 0.0e+00 1150.6 900 68.3
Duzib133G1136 Durio zibethinus HOM05D003973 ORTHO05D004679 0.0e+00 1147.9 871 67.7
CAN.G194.11 Capsicum annuum HOM05D003973 ORTHO05D004679 0.0e+00 1146.3 860 67.2
Gohir.D08G207800 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1144.8 871 67.4
TAR633G0700 Trochodendron aralioides HOM05D003973 ORTHO05D004679 0.0e+00 1144.0 872 67.4
PGSC0003DMG400031378 Solanum tuberosum HOM05D003973 ORTHO05D004679 0.0e+00 1142.1 862 66.4
FAN15G1892 Fragaria x ananassa HOM05D003973 ORTHO05D004679 0.0e+00 1140.6 914 65.5
Nitab4.5_0001419g0010 Nicotiana tabacum HOM05D003973 ORTHO05D004679 0.0e+00 1139.8 860 67.2
GSVIVG01028304001 Vitis vinifera HOM05D003973 ORTHO05D004679 0.0e+00 1139.8 861 67.8
Dinv22416 Davidia involucrata HOM05D003973 ORTHO05D004679 0.0e+00 1135.9 858 68.3
Nitab4.5_0000129g0340 Nicotiana tabacum HOM05D003973 ORTHO05D004679 0.0e+00 1135.2 859 66.9
ClCG07G000970 Citrullus lanatus HOM05D003973 ORTHO05D004679 0.0e+00 1134.8 884 66.2
Oeu026512.1 Olea europaea HOM05D003973 ORTHO05D004679 0.0e+00 1134.0 860 67.2
Peaxi162Scf00329g00811 Petunia axillaris HOM05D003973 ORTHO05D004679 0.0e+00 1129.0 893 64.6
Sed0025131 Sechium edule HOM05D003973 ORTHO05D004679 0.0e+00 1128.6 882 65.9
MSTRG.18316 Avicennia marina HOM05D003973 ORTHO05D004679 0.0e+00 1125.2 860 66.3
Phvul.007G194300 Phaseolus vulgaris HOM05D003973 ORTHO05D004679 0.0e+00 1123.2 886 65.2
Sed0015853 Sechium edule HOM05D003973 ORTHO05D004679 0.0e+00 1119.8 880 66.2
MELO3C012904.2 Cucumis melo HOM05D003973 ORTHO05D004679 0.0e+00 1115.5 882 65.3
Solyc04g008630.3 Solanum lycopersicum HOM05D003973 ORTHO05D004679 0.0e+00 1114.4 894 63.4
Sopen04g003790 Solanum pennellii HOM05D003973 ORTHO05D004679 0.0e+00 1114.0 894 63.3
Rhsim13G0034000 Rhododendron simsii HOM05D003973 ORTHO05D004679 0.0e+00 1113.6 877 67.2
CsaV3_3G022520 Cucumis sativus L. HOM05D003973 ORTHO05D004679 0.0e+00 1112.4 891 65.0
MBI17_g07970_MAGBIO Magnolia biondii HOM05D003973 ORTHO05D004679 0.0e+00 1111.7 875 65.6
THA.LOC104826212 Tarenaya hassleriana HOM05D003973 ORTHO05D004679 0.0e+00 1111.3 882 65.8
Duzib211G0218 Durio zibethinus HOM05D003973 ORTHO05D004679 0.0e+00 1107.8 875 66.5
SalBow4G2825 Salvia bowleyana HOM05D003973 ORTHO05D004679 0.0e+00 1102.4 892 63.8
DCAR_005697 Daucus carota HOM05D003973 ORTHO05D004679 0.0e+00 1102.0 860 65.3
Gohir.A08G060000 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1095.1 873 66.3
AL4G26480 Arabidopsis lyrata HOM05D003973 ORTHO05D004679 0.0e+00 1092.8 881 65.9
THA.LOC104800875 Tarenaya hassleriana HOM05D003973 ORTHO05D004679 0.0e+00 1091.3 876 65.6
Migut.D00414 Erythranthe guttata HOM05D003973 ORTHO05D004679 0.0e+00 1088.9 859 65.5
Thhalv10016226m.g Eutrema salsugineum HOM05D003973 ORTHO05D004679 0.0e+00 1088.9 886 65.0
Gohir.D08G069200 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1086.2 873 65.4
Lsat_1_v5_gn_9_8721 Lactuca sativa HOM05D003973 ORTHO05D004679 0.0e+00 1086.2 867 65.4
DCAR_000939 Daucus carota HOM05D003973 ORTHO05D004679 0.0e+00 1084.3 905 62.8
Sp4g13740 Schrenkiella parvula HOM05D003973 ORTHO05D004679 0.0e+00 1084.3 872 65.3
ECA247G3763 Erigeron canadensis HOM05D003973 ORTHO05D004679 0.0e+00 1083.6 868 65.3
Carub.0004s1253 Capsella rubella HOM05D003973 ORTHO05D004679 0.0e+00 1083.2 872 65.1
CARHR124850 Cardamine hirsuta HOM05D003973 ORTHO05D004679 0.0e+00 1081.6 874 64.9
AT2G31260 Arabidopsis thaliana HOM05D003973 ORTHO05D004679 0.0e+00 1076.2 882 65.0
BolC4t27568H Brassica oleracea HOM05D003973 ORTHO05D004679 0.0e+00 1075.1 875 64.6
BcaB06g28520 Brassica carinata HOM05D003973 ORTHO05D004679 4.1e-311 1071.2 875 64.3
BcaB02g10369 Brassica carinata HOM05D003973 ORTHO05D004679 1.5e-310 1069.3 873 63.9
C04p60770 Brassica napus HOM05D003973 ORTHO05D004679 1.5e-310 1069.3 875 64.3
Aqoxy1G00848 Aquilegia oxysepala HOM05D003973 ORTHO05D004679 5.0e-309 1064.3 874 63.5
A04p24090 Brassica napus HOM05D003973 ORTHO05D004679 2.1e-307 1058.9 863 64.7
Gorai.004G220200 Gossypium raimondii HOM05D003973 ORTHO05D004679 4.6e-307 1057.7 746 71.3
HanXRQChr15g0467921 Helianthus annuus HOM05D003973 ORTHO05D004679 4.6e-307 1057.7 863 64.0
Oeu039681.1 Olea europaea HOM05D003973 ORTHO05D004679 4.6e-307 1057.7 865 64.2
Ah.11g049650 Amaranthus hybridus HOM05D003973 ORTHO05D004679 1.5e-305 1052.7 887 62.7
HanXRQChr10g0281061 Helianthus annuus HOM05D003973 ORTHO05D004679 9.7e-305 1050.0 863 63.3
BraA04t17928Z Brassica rapa HOM05D003973 ORTHO05D004679 1.3e-304 1049.7 798 67.4
BcaB06g28436 Brassica carinata HOM05D003973 ORTHO05D004679 4.5e-302 1041.2 884 63.6
PSO782G1372 Papaver somniferum HOM05D003973 ORTHO05D004679 5.9e-302 1040.8 852 63.3
PSO063G1318 Papaver somniferum HOM05D003973 ORTHO05D004679 2.2e-301 1038.9 850 63.8
Lj2A1153G48 Lonicera japonica HOM05D003973 ORTHO05D004679 1.4e-300 1036.2 860 63.7
Aa31LG5G5690 Aethionema arabicum HOM05D003973 ORTHO05D004679 3.0e-298 1028.5 777 67.1
Gohir.A08G189300 Gossypium hirsutum HOM05D003973 ORTHO05D004679 2.6e-297 1025.4 871 61.9
Lj1A65T50 Lonicera japonica HOM05D003973 ORTHO05D004679 1.0e-290 1003.4 847 62.8
EL10Ac5g10415 Beta vulgaris HOM05D003973 ORTHO05D004679 8.8e-290 1000.3 945 56.2
SGA_v2.0_scaffold138G35249 Striga asiatica HOM05D003973 ORTHO05D004679 1.3e-285 986.5 857 60.9
Hund09596 Selenicereus undatus HOM05D003973 ORTHO05D004679 1.5e-284 983.0 883 60.1
vmacro02653 Vaccinium macrocarpon HOM05D003973 ORTHO05D004679 1.4e-279 966.5 853 61.8
Oeu058816.4 Olea europaea HOM05D003973 ORTHO05D004679 2.2e-277 959.1 953 55.8
HanXRQChr08g0217761 Helianthus annuus HOM05D003973 ORTHO05D004679 1.5e-276 956.4 855 59.8
Nn3g17035 Nelumbo nucifera HOM05D003973 ORTHO05D004679 1.5e-276 956.4 617 76.3
AUR62024730 Chenopodium quinoa HOM05D003973 ORTHO05D004679 1.2e-270 936.8 896 55.9
Sc17g0000740 Simmondsia chinensis HOM05D003973 ORTHO05D004679 7.2e-268 927.5 582 77.7
AUR62011889 Chenopodium quinoa HOM05D003973 ORTHO05D004679 1.6e-267 926.4 894 56.3
unitig_0.g154 Utricularia gibba HOM05D003973 ORTHO05D004679 2.3e-266 922.5 874 56.1
ATR0680G230 Amborella trichopoda HOM05D003973 ORTHO05D004679 2.9e-261 905.6 825 57.1
SHI09836 Sapria himalayana HOM05D003973 ORTHO05D004679 6.6e-253 877.9 909 54.3
ATR0559G363 Amborella trichopoda HOM05D003973 ORTHO05D004679 5.8e-249 864.8 828 55.2
HPP92_008425 Vanilla planifolia HOM05D003973 ORTHO05D004679 3.5e-238 828.9 812 54.7
Zm00001eb010620 Zea mays HOM05D003973 ORTHO05D004679 2.5e-236 822.8 868 52.2
Os03g0248000 Oryza sativa ssp. japonica HOM05D003973 ORTHO05D004679 5.6e-236 821.6 863 51.4
Os10g0163100 Oryza sativa ssp. japonica HOM05D003973 ORTHO05D004679 8.1e-235 817.8 805 53.5
ECA236G2624 Erigeron canadensis HOM05D003973 ORTHO05D004679 8.4e-232 807.7 868 51.8
SEGI_30090 Sequoiadendron giganteum HOM05D003973 ORTHO05D004679 1.2e-230 803.9 812 53.4
Ah.02g111890 Amaranthus hybridus HOM05D003973 ORTHO05D004679 2.4e-226 789.6 805 54.3
HPP92_008421 Vanilla planifolia HOM05D003973 ORTHO05D004679 6.4e-224 781.6 610 63.4
CiPaw.04G185700 Carya illinoinensis HOM05D003973 ORTHO05D004679 1.1e-223 780.8 575 70.6
Mapoly0002s0148 Marchantia polymorpha HOM05D003973 ORTHO05D004679 1.4e-210 737.3 844 47.3
SMO239G0162 Selaginella moellendorffii HOM05D003973 ORTHO05D004679 3.1e-210 736.1 566 61.7
Pp3c10_9800 Physcomitrium patens HOM05D003973 ORTHO05D004679 1.4e-202 710.7 864 45.1
Pp3c2_1820 Physcomitrium patens HOM05D003973 ORTHO05D004679 3.3e-196 689.5 878 43.6
BraA05t20372Z Brassica rapa HOM05D003973 ORTHO05D004679 1.0e-189 667.9 624 58.3
A05p14440 Brassica napus HOM05D003973 ORTHO05D004679 4.1e-186 656.0 624 57.4
CBR_g24398 Chara braunii HOM05D003973 ORTHO05D004679 3.8e-184 649.4 610 52.6
unitig_60.g25752 Utricularia gibba HOM05D003973 ORTHO05D004679 4.8e-171 605.9 865 41.7
VMungo0720G0690 Vigna mungo HOM05D003973 ORTHO05D004679 8.2e-171 605.1 578 55.9
AagrBONN_evm.TU.Sc2ySwM_117.1675 Anthoceros agrestis HOM05D003973 ORTHO05D004679 6.1e-142 509.2 571 47.5
MBI18_g15332_MAGBIO Magnolia biondii HOM05D003973 ORTHO05D004679 1.8e-141 507.7 517 54.9
AUR62024729 Chenopodium quinoa HOM05D003973 ORTHO05D004679 1.8e-133 481.1 426 58.7
MCO05G121 Micromonas commoda HOM05D003973 ORTHO05D004679 1.7e-115 421.4 575 39.3
CDE02G3928 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 7.3e-111 406.0 501 46.3
CDE06G1379 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 1.2e-110 405.2 475 48.0
BcaB06g28438 Brassica carinata HOM05D003973 ORTHO05D004679 5.2e-109 399.8 401 57.1
BolC4t23456H Brassica oleracea HOM05D003973 ORTHO05D004679 4.3e-95 353.6 266 64.3
Cre09.g391500 Chlamydomonas reinhardtii HOM05D003973 ORTHO05D004679 1.2e-92 345.5 698 32.2
CDE06G1301 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 2.7e-81 307.8 225 63.6
C04p19230 Brassica napus HOM05D003973 ORTHO05D004679 3.7e-78 297.4 266 57.1
BcaC02g11207 Brassica carinata HOM05D003973 ORTHO05D004679 1.1e-69 269.2 175 71.4
Cfa025050 Carpinus fangiana HOM05D003973 ORTHO05D004679 4.5e-68 263.8 520 30.0
PRCOL_00006952 Prasinoderma coloniale HOM05D003973 ORTHO05D004679 9.1e-61 239.6 506 30.0
Hund02908 Selenicereus undatus HOM05D003973 ORTHO05D004679 1.8e-56 225.3 157 70.7
VMungo0720G0978 Vigna mungo HOM05D003973 ORTHO05D435101 4.1e-37 161.0 264 39.4
Psat2g015440 Pisum sativum HOM05D003973 ORTHO05D004679 3.5e-36 157.9 190 50.5
Sc17g0000730 Simmondsia chinensis HOM05D003973 ORTHO05D004679 6.3e-30 137.1 210 42.4
AagrBONN_evm.TU.Sc2ySwM_344.134 Anthoceros agrestis HOM05D003973 ORTHO05D004679 1.3e-19 102.8 73 63.0
BcaB06g28437 Brassica carinata HOM05D003973 ORTHO05D004679 1.5e-18 99.4 366 29.2
CSS0024912 Camellia sinensis var. sinensis HOM05D003973 ORTHO05D004679 2.5e-18 98.6 74 70.3
Hund02909 Selenicereus undatus HOM05D003973 ORTHO05D004679 1.2e-17 96.3 123 48.0
VMungo0251G0786 Vigna mungo HOM05D003973 ORTHO05D432747 3.5e-12 78.2 74 59.5


User provided reference genes

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