Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G16271 Trifolium pratense HOM05D007489 ORTHO05D008037 0.0e+00 1486.1 822 100.0
Medtr4g087875 Medicago truncatula HOM05D007489 ORTHO05D008037 0.0e+00 1148.3 823 81.5
Lj4g0021888 Lotus japonicus HOM05D007489 ORTHO05D008037 9.0e-252 874.0 789 65.1
Ca_26049_v3 Cicer arietinum L. HOM05D007489 ORTHO05D008037 3.0e-247 859.0 820 64.0
Glyma.07G204500 Glycine max HOM05D007489 ORTHO05D008037 5.0e-242 841.6 811 62.8
Phvul.003G057800 Phaseolus vulgaris HOM05D007489 ORTHO05D008037 1.0e-215 754.2 846 56.9
arahy.Tifrunner.gnm1.ann1.S0ULK2 Arachis hypogaea HOM05D007489 ORTHO05D008037 8.6e-194 681.4 789 55.3
arahy.Tifrunner.gnm1.ann1.X1E7Z2 Arachis hypogaea HOM05D007489 ORTHO05D008037 7.0e-180 635.2 762 54.5
Lalb_Chr16g0384211 Lupinus albus HOM05D007489 ORTHO05D008037 9.0e-143 511.9 553 56.1
VMungo0251G2273 Vigna mungo HOM05D007489 ORTHO05D008037 4.6e-131 473.0 633 49.3
Prupe.4G057700 Prunus persica HOM05D007489 ORTHO05D008037 2.0e-86 324.7 828 36.1
MD10G1283800 Malus domestica HOM05D007489 ORTHO05D008037 5.5e-84 316.6 835 35.6
CSS0034374 Camellia sinensis var. sinensis HOM05D007489 ORTHO05D008037 5.4e-79 300.1 861 32.6
RcHm_v2.0_Chr7g0215591 Rosa chinensis HOM05D007489 ORTHO05D008037 2.1e-75 288.1 836 32.8
TAR627G1016 Trochodendron aralioides HOM05D007489 ORTHO05D008037 2.9e-72 277.7 870 32.3
Duzib235G0638 Durio zibethinus HOM05D007489 ORTHO05D008037 3.7e-72 277.3 854 33.4
FAN08G0692 Fragaria x ananassa HOM05D007489 ORTHO05D008037 6.0e-70 270.0 860 32.3
Duzib192G0524 Durio zibethinus HOM05D007489 ORTHO05D008037 7.8e-70 269.6 849 32.3
RcHm_v2.0_Chr7g0216741 Rosa chinensis HOM05D007489 ORTHO05D008037 1.7e-69 268.5 848 32.3
Potri.011G063500 Populus trichocarpa HOM05D007489 ORTHO05D008037 2.8e-67 261.2 799 32.2
Gohir.D10G031400 Gossypium hirsutum HOM05D007489 ORTHO05D008037 9.8e-65 252.7 868 31.2
FvH4_5g26040 Fragaria vesca HOM05D007489 ORTHO05D008037 4.9e-64 250.4 847 32.2
FAN18G0613 Fragaria x ananassa HOM05D007489 ORTHO05D008037 1.9e-63 248.4 867 31.5
FAN04G2784 Fragaria x ananassa HOM05D007489 ORTHO05D008037 7.1e-63 246.5 869 31.2
Sabra11G0045300 Salix brachista HOM05D007489 ORTHO05D008037 1.2e-62 245.7 809 31.4
Hma1.2p1_0155F.1_g068400 Hydrangea macrophylla HOM05D007489 ORTHO05D008037 1.7e-61 241.9 833 31.1
Nn1g09012 Nelumbo nucifera HOM05D007489 ORTHO05D008037 3.0e-61 241.1 845 32.1
Haze_06275 Corylus avellana HOM05D007489 ORTHO05D008037 5.1e-61 240.4 851 30.2
Dinv40650 Davidia involucrata HOM05D007489 ORTHO05D008037 8.6e-61 239.6 856 31.7
Manes.16G035700 Manihot esculenta HOM05D007489 ORTHO05D008037 1.5e-60 238.8 986 29.7
Thecc.06G175600 Theobroma cacao HOM05D007489 ORTHO05D008037 5.6e-60 236.9 804 31.2
CANSAT54G0123 Cannabis sativa HOM05D007489 ORTHO05D008037 8.1e-59 233.0 876 28.9
Rhsim02G0140400 Rhododendron simsii HOM05D007489 ORTHO05D008037 8.1e-59 233.0 893 29.8
Glyma.13G171600 Glycine max HOM05D007489 ORTHO05D008037 1.8e-58 231.9 248 56.5
Gohir.A10G030500 Gossypium hirsutum HOM05D007489 ORTHO05D008037 9.9e-57 226.1 811 31.6
Gorai.011G033000 Gossypium raimondii HOM05D007489 ORTHO05D008037 9.9e-57 226.1 859 30.3
Sc05g0007220 Simmondsia chinensis HOM05D007489 ORTHO05D008037 1.7e-56 225.3 896 30.6
ClCG01G023550 Citrullus lanatus HOM05D007489 ORTHO05D008037 2.4e-55 221.5 826 30.3
HanXRQChr11g0327141 Helianthus annuus HOM05D007489 ORTHO05D008037 1.2e-54 219.2 829 30.8
MELO3C007230.2 Cucumis melo HOM05D007489 ORTHO05D008037 9.6e-52 209.5 822 30.3
Lj1A1196T41 Lonicera japonica HOM05D007489 ORTHO05D008037 1.6e-51 208.8 778 31.0
CAN.G79.55 Capsicum annuum HOM05D007489 ORTHO05D008037 2.4e-50 204.9 858 31.9
ECA234G3308 Erigeron canadensis HOM05D007489 ORTHO05D008037 8.9e-50 203.0 844 29.3
CiPaw.10G057000 Carya illinoinensis HOM05D007489 ORTHO05D008037 2.0e-49 201.8 461 35.8
Lsat_1_v5_gn_4_50401 Lactuca sativa HOM05D007489 ORTHO05D008037 2.0e-49 201.8 822 29.0
Sed0003654 Sechium edule HOM05D007489 ORTHO05D008037 3.4e-49 201.1 836 28.6
Aqoxy5G02160 Aquilegia oxysepala HOM05D007489 ORTHO05D008037 8.4e-48 196.4 835 29.7
Atru.chr10.1727 Acer truncatum HOM05D007489 ORTHO05D008037 1.2e-46 192.6 350 40.6
Glyma.13G171550 Glycine max HOM05D007489 ORTHO05D008037 1.6e-46 192.2 157 68.2
Nitab4.5_0001928g0060 Nicotiana tabacum HOM05D007489 ORTHO05D008037 2.1e-46 191.8 831 30.3
FAN13G1982 Fragaria x ananassa HOM05D007489 ORTHO05D008037 1.1e-44 186.0 877 27.4
PGR004G0633 Punica granatum HOM05D007489 ORTHO05D008037 3.6e-43 181.0 837 27.4
AL7G35790 Arabidopsis lyrata HOM05D010718 ORTHO05D008037 4.0e-42 177.6 862 27.4
Sopen02g022090 Solanum pennellii HOM05D007489 ORTHO05D008037 5.3e-42 177.2 867 28.3
PSO063G1126 Papaver somniferum HOM05D007489 ORTHO05D008037 1.5e-41 175.6 925 27.5
AUR62036546 Chenopodium quinoa HOM05D007489 ORTHO05D008037 4.9e-40 170.6 856 28.0
EL10Ac8g20488 Beta vulgaris HOM05D007489 ORTHO05D008037 6.0e-38 163.7 871 28.6
AT4G18490 Arabidopsis thaliana HOM05D010718 ORTHO05D008037 7.8e-38 163.3 851 27.4
BcaC06g30581 Brassica carinata HOM05D010718 ORTHO05D008037 2.3e-37 161.8 850 27.5
Oeu041109.2 Olea europaea HOM05D007489 ORTHO05D008037 3.0e-37 161.4 900 25.2
A03p51330 Brassica napus HOM05D010718 ORTHO05D008037 2.5e-36 158.3 872 26.8
QL05p044409 Quercus lobata HOM05D007489 ORTHO05D008037 5.6e-36 157.1 272 43.4
Thhalv10024499m.g Eutrema salsugineum HOM05D010718 ORTHO05D008037 2.8e-35 154.8 822 28.5
GSVIVG01021171001 Vitis vinifera HOM05D007489 ORTHO05D008037 1.1e-34 152.9 262 43.1
CARHR225330 Cardamine hirsuta HOM05D010718 ORTHO05D008037 3.1e-34 151.4 859 27.4
Sp7g15530 Schrenkiella parvula HOM05D010718 ORTHO05D008037 1.3e-32 146.0 873 26.9
CsaV3_6G050690 Cucumis sativus L. HOM05D007489 ORTHO05D008037 1.9e-31 142.1 894 24.6
Migut.J01535 Erythranthe guttata HOM05D007489 ORTHO05D008037 2.1e-30 138.7 793 26.7
Aa31LG6G1240 Aethionema arabicum HOM05D010718 ORTHO05D008037 2.7e-30 138.3 829 28.0
BraA03t14214Z Brassica rapa HOM05D010718 ORTHO05D008037 6.0e-30 137.1 833 27.1
Cpa.g.sc7.37 Carica papaya HOM05D007489 ORTHO05D008037 1.3e-27 129.4 437 31.1
MBI06_g31402_MAGBIO Magnolia biondii HOM05D007489 ORTHO05D008037 3.7e-27 127.9 610 28.5
Lalb_Chr16g0384221 Lupinus albus HOM05D007489 ORTHO05D008037 6.2e-27 127.1 108 66.7
Carub.0007s2274 Capsella rubella HOM05D010718 ORTHO05D008037 1.1e-26 126.3 877 27.4
SalBow6G6000 Salvia bowleyana HOM05D007489 ORTHO05D008037 5.3e-26 124.0 890 25.7
BraA01t00996Z Brassica rapa HOM05D010718 ORTHO05D008037 9.0e-26 123.2 906 25.6
DCAR_004024 Daucus carota HOM05D007489 ORTHO05D008037 9.0e-26 123.2 332 34.3
C07p49740 Brassica napus HOM05D010718 ORTHO05D008037 7.6e-25 120.2 843 25.7
SalBow6G3268 Salvia bowleyana HOM05D007489 ORTHO05D008037 7.6e-25 120.2 893 25.8
BcaNung02709 Brassica carinata HOM05D010718 ORTHO05D008037 1.0e-24 119.8 861 25.7
BolC7t45475H Brassica oleracea HOM05D010718 ORTHO05D008037 2.2e-24 118.6 848 25.9
MD05G1304700 Malus domestica HOM05D007489 ORTHO05D008037 4.9e-24 117.5 164 46.3
Ciclev10017982m.g Citrus clementina HOM05D007489 ORTHO05D008037 1.9e-23 115.5 209 42.6
PGR004G2208 Punica granatum HOM05D007489 ORTHO05D008037 1.2e-22 112.8 294 33.7
C01p12440 Brassica napus HOM05D010718 ORTHO05D008037 1.6e-22 112.5 899 24.7
A01p10500 Brassica napus HOM05D010718 ORTHO05D008037 5.1e-21 107.5 893 24.3
Solyc02g077210.1 Solanum lycopersicum HOM05D007489 ORTHO05D008037 3.3e-20 104.8 264 34.5
Os01g0755100 Oryza sativa ssp. japonica HOM05D007489 ORTHO05D008037 5.7e-20 104.0 829 25.5
COL.COLO4_31347 Corchorus olitorius HOM05D007489 ORTHO05D008037 7.4e-20 103.6 921 24.1
Peaxi162Scf00223g01419 Petunia axillaris HOM05D007489 ORTHO05D008037 3.7e-19 101.3 202 37.1
Peaxi162Scf00223g01422 Petunia axillaris HOM05D007489 ORTHO05D008037 4.8e-19 100.9 94 58.5
Zm00001eb152860 Zea mays HOM05D007489 ORTHO05D008037 6.2e-19 100.5 823 24.3
Hund23951 Selenicereus undatus HOM05D007489 ORTHO05D008037 1.4e-18 99.4 281 35.6
DCAR_007972 Daucus carota HOM05D007489 ORTHO05D008037 4.1e-18 97.8 102 52.0
MBI06_g31401_MAGBIO Magnolia biondii HOM05D007489 ORTHO05D008037 1.2e-17 96.3 106 49.1
unitig_0.g132 Utricularia gibba HOM05D007489 ORTHO05D008037 2.6e-17 95.1 108 48.1
SEGI_30603 Sequoiadendron giganteum HOM05D007489 ORTHO05D008037 1.3e-16 92.8 148 40.5
Aqoxy534s001 Aquilegia oxysepala HOM05D007489 ORTHO05D008037 1.9e-15 89.0 104 47.1
ATR0602G208 Amborella trichopoda HOM05D007489 ORTHO05D008037 5.5e-15 87.4 793 23.6
SGA_v2.0_scaffold66G22379 Striga asiatica HOM05D007489 ORTHO05D008037 1.2e-14 86.3 867 25.7
arahy.Tifrunner.gnm1.ann1.8IS92U Arachis hypogaea HOM05D007489 ORTHO05D008037 1.1e-12 79.7 65 66.2
AUR62031141 Chenopodium quinoa HOM05D007489 ORTHO05D008037 2.5e-12 78.6 782 25.8
Nitab4.5_0000376g0220 Nicotiana tabacum HOM05D007489 ORTHO05D008037 5.7e-12 77.4 838 23.6
BolC1t01218H Brassica oleracea HOM05D010718 ORTHO05D008037 1.1e-10 73.2 917 23.7
HPP92_008016 Vanilla planifolia HOM05D007489 ORTHO05D008037 1.1e-10 73.2 805 22.2
SalBow2G2687 Salvia bowleyana HOM05D007489 ORTHO05D008037 2.4e-10 72.0 71 50.7
SalBow1G4805 Salvia bowleyana HOM05D007489 ORTHO05D008037 2.6e-09 68.6 71 49.3
HPP92_007965 Vanilla planifolia HOM05D007489 ORTHO05D008037 1.0e-08 66.6 114 37.7
SMO340G0226 Selaginella moellendorffii HOM05D029666 ORTHO05D008037 1.3e-08 66.2 65 49.2
QL05p044176 Quercus lobata HOM05D007489 ORTHO05D008037 1.7e-08 65.9 137 42.3
SMO356G0683 Selaginella moellendorffii HOM05D029666 ORTHO05D008037 1.7e-08 65.9 65 49.2
MD05G1304800 Malus domestica HOM05D007489 ORTHO05D008037 5.5e-07 60.8 505 24.6
Eucgr.D00548 Eucalyptus grandis HOM05D007489 ORTHO05D008037 3.6e-06 58.2 43 74.4


User provided reference genes

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