Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G16259 Trifolium pratense HOM05D004920 ORTHO05D005998 1.0e-145 520.0 251 100.0
Medtr4g087955 Medicago truncatula HOM05D004920 ORTHO05D005998 1.7e-121 439.5 251 83.3
Ca_10660_v3 Cicer arietinum L. HOM05D004920 ORTHO05D005998 4.7e-119 431.4 251 82.1
TPR.G17014 Trifolium pratense HOM05D004920 ORTHO05D005998 1.5e-117 426.4 251 82.1
Glyma.12G114600 Glycine max HOM05D004920 ORTHO05D005998 3.2e-115 418.7 252 78.6
Lj4g0024893 Lotus japonicus HOM05D004920 ORTHO05D005998 4.6e-114 414.8 251 78.9
Phvul.001G005700 Phaseolus vulgaris HOM05D004920 ORTHO05D005998 6.0e-114 414.5 252 79.4
VMungo1127G0753 Vigna mungo HOM05D004920 ORTHO05D005998 2.5e-112 409.1 252 79.0
Lalb_Chr07g0189681 Lupinus albus HOM05D004920 ORTHO05D005998 8.7e-97 357.5 251 72.5
CsaV3_6G050600 Cucumis sativus L. HOM05D004920 ORTHO05D005998 2.1e-95 352.8 241 70.5
Haze_06318 Corylus avellana HOM05D004920 ORTHO05D005998 2.8e-95 352.4 247 68.8
Cfa000557 Carpinus fangiana HOM05D004920 ORTHO05D005998 4.8e-95 351.7 247 68.4
Duzib235G1063 Durio zibethinus HOM05D004920 ORTHO05D005998 2.4e-94 349.4 257 66.1
ClCG01G023480 Citrullus lanatus HOM05D004920 ORTHO05D005998 4.0e-94 348.6 240 69.6
Gohir.D01G045600 Gossypium hirsutum HOM05D004920 ORTHO05D005998 9.0e-94 347.4 255 66.7
Actinidia07625 Actinidia chinensis HOM05D004920 ORTHO05D005998 2.6e-93 345.9 221 71.9
Oeu043091.1 Olea europaea HOM05D004920 ORTHO05D005998 7.6e-93 344.4 249 66.7
Thecc.06G177000 Theobroma cacao HOM05D004920 ORTHO05D005998 9.9e-93 344.0 260 66.2
CiPaw.09G066500 Carya illinoinensis HOM05D004920 ORTHO05D005998 1.3e-92 343.6 256 66.8
Dinv40630 Davidia involucrata HOM05D004920 ORTHO05D005998 2.2e-92 342.8 221 72.9
Manes.17G051900 Manihot esculenta HOM05D004920 ORTHO05D005998 2.2e-92 342.8 222 72.5
Gorai.002G065200 Gossypium raimondii HOM05D004920 ORTHO05D005998 2.9e-92 342.4 254 66.5
Oeu025561.1 Olea europaea HOM05D004920 ORTHO05D005998 3.8e-92 342.0 253 65.6
TAR624G0520 Trochodendron aralioides HOM05D004920 ORTHO05D005998 4.9e-92 341.7 248 66.5
CANSAT35G1037 Cannabis sativa HOM05D004920 ORTHO05D005998 1.4e-91 340.1 220 71.4
MD05G1306300 Malus domestica HOM05D004920 ORTHO05D005998 1.4e-91 340.1 220 72.7
Sabra04G0033000 Salix brachista HOM05D004920 ORTHO05D005998 1.9e-91 339.7 208 74.0
Cpa.g.sc80.25 Carica papaya HOM05D004920 ORTHO05D005998 3.2e-91 339.0 220 71.4
MD10G1285300 Malus domestica HOM05D004920 ORTHO05D005998 4.2e-91 338.6 220 71.8
Sed0019770 Sechium edule HOM05D004920 ORTHO05D005998 5.4e-91 338.2 208 74.5
Cc02_g14330 Coffea canephora HOM05D004920 ORTHO05D005998 7.1e-91 337.8 221 70.1
Eucgr.D00572 Eucalyptus grandis HOM05D004920 ORTHO05D005998 7.1e-91 337.8 217 74.7
Gohir.D05G160000 Gossypium hirsutum HOM05D004920 ORTHO05D005998 9.3e-91 337.4 222 72.5
Potri.004G052200 Populus trichocarpa HOM05D004920 ORTHO05D005998 9.3e-91 337.4 208 73.1
GSVIVG01021153001 Vitis vinifera HOM05D004920 ORTHO05D005998 1.2e-90 337.0 224 71.0
Ciclev10016425m.g Citrus clementina HOM05D004920 ORTHO05D005998 1.6e-90 336.7 220 70.5
Nn2g14559 Nelumbo nucifera HOM05D004920 ORTHO05D005998 3.5e-90 335.5 209 72.7
TWI38G1999 Tripterygium wilfordii HOM05D004920 ORTHO05D005998 4.6e-90 335.1 202 75.7
Gohir.A05G157100 Gossypium hirsutum HOM05D004920 ORTHO05D005998 7.9e-90 334.3 258 64.7
RcHm_v2.0_Chr5g0009901 Rosa chinensis HOM05D004920 ORTHO05D005998 1.0e-89 334.0 213 73.2
Atru.chr10.1743 Acer truncatum HOM05D004920 ORTHO05D005998 1.3e-89 333.6 220 70.5
AT2G34050 Arabidopsis thaliana HOM05D004920 ORTHO05D005998 1.7e-89 333.2 247 65.2
Rhsim02G0138400 Rhododendron simsii HOM05D004920 ORTHO05D005998 2.3e-89 332.8 254 66.1
Sed0013972 Sechium edule HOM05D004920 ORTHO05D005998 3.0e-89 332.4 214 72.4
Aa31LG9G13860 Aethionema arabicum HOM05D004920 ORTHO05D005998 5.1e-89 331.6 245 64.5
PGR004G0415 Punica granatum HOM05D004920 ORTHO05D005998 8.7e-89 330.9 218 72.5
PGR046G0004 Punica granatum HOM05D004920 ORTHO05D005998 8.7e-89 330.9 218 72.5
Hund21192 Selenicereus undatus HOM05D004920 ORTHO05D005998 1.1e-88 330.5 220 70.5
BcaC02g07783 Brassica carinata HOM05D004920 ORTHO05D005998 1.5e-88 330.1 247 64.0
CARHR128130 Cardamine hirsuta HOM05D004920 ORTHO05D005998 3.3e-88 328.9 219 69.9
Peaxi162Scf00016g00346 Petunia axillaris HOM05D004920 ORTHO05D005998 3.3e-88 328.9 208 72.6
Thhalv10017133m.g Eutrema salsugineum HOM05D004920 ORTHO05D005998 4.3e-88 328.6 251 62.9
Peaxi162Scf00367g00049 Petunia axillaris HOM05D004920 ORTHO05D005998 4.3e-88 328.6 208 72.6
AL4G29930 Arabidopsis lyrata HOM05D004920 ORTHO05D005998 5.6e-88 328.2 222 69.4
FvH4_7g02080 Fragaria vesca HOM05D004920 ORTHO05D005998 7.3e-88 327.8 248 63.7
FAN06G4868 Fragaria x ananassa HOM05D004920 ORTHO05D005998 7.3e-88 327.8 248 63.7
Carub.0004s1568 Capsella rubella HOM05D004920 ORTHO05D005998 9.6e-88 327.4 247 63.6
A04p26140 Brassica napus HOM05D004920 ORTHO05D005998 1.3e-87 327.0 245 63.7
BolC4t27823H Brassica oleracea HOM05D004920 ORTHO05D005998 1.3e-87 327.0 251 62.5
FAN03G1929 Fragaria x ananassa HOM05D004920 ORTHO05D005998 1.3e-87 327.0 248 64.1
Sp4g16400 Schrenkiella parvula HOM05D004920 ORTHO05D005998 3.6e-87 325.5 202 73.8
Dinv36435 Davidia involucrata HOM05D004920 ORTHO05D005998 4.8e-87 325.1 209 71.8
A05p11610 Brassica napus HOM05D004920 ORTHO05D005998 8.1e-87 324.3 206 71.4
C04p15060 Brassica napus HOM05D004920 ORTHO05D005998 8.1e-87 324.3 206 71.8
C04p63520 Brassica napus HOM05D004920 ORTHO05D005998 8.1e-87 324.3 245 62.9
BraA04t18117Z Brassica rapa HOM05D004920 ORTHO05D005998 8.1e-87 324.3 245 62.9
BraA05t20108Z Brassica rapa HOM05D004920 ORTHO05D005998 8.1e-87 324.3 206 71.4
FvH4_3g08250 Fragaria vesca HOM05D004920 ORTHO05D005998 8.1e-87 324.3 244 63.9
FAN11G1044 Fragaria x ananassa HOM05D004920 ORTHO05D005998 8.1e-87 324.3 244 63.9
FAN16G1146 Fragaria x ananassa HOM05D004920 ORTHO05D005998 8.1e-87 324.3 244 63.9
MSTRG.14155 Avicennia marina HOM05D004920 ORTHO05D005998 1.8e-86 323.2 202 71.8
BcaB02g10610 Brassica carinata HOM05D004920 ORTHO05D005998 1.8e-86 323.2 226 67.3
Solyc02g031770.4 Solanum lycopersicum HOM05D004920 ORTHO05D005998 1.8e-86 323.2 247 61.5
Hma1.2p1_0155F.1_g068520 Hydrangea macrophylla HOM05D004920 ORTHO05D005998 2.4e-86 322.8 226 67.7
THA.LOC104812631 Tarenaya hassleriana HOM05D004920 ORTHO05D005998 3.1e-86 322.4 202 74.3
BolC4t23082H Brassica oleracea HOM05D004920 ORTHO05D005998 4.0e-86 322.0 206 71.4
Sopen02g010080 Solanum pennellii HOM05D004920 ORTHO05D005998 4.0e-86 322.0 247 61.1
CAN.G1961.2 Capsicum annuum HOM05D004920 ORTHO05D005998 5.3e-86 321.6 202 72.3
Sc17g0005830 Simmondsia chinensis HOM05D004920 ORTHO05D005998 6.9e-86 321.2 220 68.6
MBI07_g06434_MAGBIO Magnolia biondii HOM05D004920 ORTHO05D005998 1.2e-85 320.5 251 60.6
Aqoxy1G02218 Aquilegia oxysepala HOM05D004920 ORTHO05D005998 2.0e-85 319.7 200 73.0
Lsat_1_v5_gn_7_23761 Lactuca sativa HOM05D004920 ORTHO05D005998 2.0e-85 319.7 222 68.0
SGA_v2.0_scaffold16G07660 Striga asiatica HOM05D004920 ORTHO05D005998 4.5e-85 318.5 196 73.0
Rhsim06G0035100 Rhododendron simsii HOM05D004920 ORTHO05D005998 5.8e-85 318.2 267 61.8
AUR62031127 Chenopodium quinoa HOM05D004920 ORTHO05D005998 1.3e-84 317.0 198 72.2
DCAR_007975 Daucus carota HOM05D004920 ORTHO05D005998 1.3e-84 317.0 202 70.3
Nitab4.5_0000138g0010 Nicotiana tabacum HOM05D004920 ORTHO05D005998 1.7e-84 316.6 262 59.9
AUR62014920 Chenopodium quinoa HOM05D004920 ORTHO05D005998 3.8e-84 315.5 201 71.1
Migut.M01075 Erythranthe guttata HOM05D004920 ORTHO05D005998 3.8e-84 315.5 206 69.9
Ah.05g178940 Amaranthus hybridus HOM05D004920 ORTHO05D005998 4.9e-84 315.1 205 68.8
BcaB06g28727 Brassica carinata HOM05D004920 ORTHO05D005998 1.1e-83 313.9 249 61.0
ECA236G4389 Erigeron canadensis HOM05D004920 ORTHO05D005998 4.2e-83 312.0 208 70.7
EL10Ac1g01008 Beta vulgaris HOM05D004920 ORTHO05D005998 9.3e-83 310.8 204 69.1
HPP92_018237 Vanilla planifolia HOM05D004920 ORTHO05D005998 1.6e-82 310.1 205 68.8
CDE02G3849 Ceratophyllum demersum HOM05D004920 ORTHO05D005998 2.1e-82 309.7 198 68.7
PSO063G1259 Papaver somniferum HOM05D004920 ORTHO05D005998 6.0e-82 308.1 201 68.2
PSO541G3866 Papaver somniferum HOM05D004920 ORTHO05D005998 1.3e-81 307.0 201 68.2
PSO675G0526 Papaver somniferum HOM05D004920 ORTHO05D005998 2.3e-81 306.2 201 68.2
HanXRQChr15g0481321 Helianthus annuus HOM05D004920 ORTHO05D005998 4.3e-80 302.0 186 71.5
Lj7P478G59 Lonicera japonica HOM05D004920 ORTHO05D005998 5.6e-80 301.6 172 79.7
SGA_v2.0_scaffold341G49353 Striga asiatica HOM05D004920 ORTHO05D005998 2.1e-79 299.7 189 70.4
FAN25G0865 Fragaria x ananassa HOM05D004920 ORTHO05D005998 3.1e-78 295.8 245 58.4
MELO3C007238.2 Cucumis melo HOM05D004920 ORTHO05D005998 1.7e-76 290.0 248 60.5
Gorai.009G165000 Gossypium raimondii HOM05D004920 ORTHO05D005998 1.7e-76 290.0 222 64.9
Nitab4.5_0008952g0010 Nicotiana tabacum HOM05D004920 ORTHO05D005998 7.1e-75 284.6 349 44.4
ATR0712G057 Amborella trichopoda HOM05D004920 ORTHO05D005998 2.5e-72 276.2 203 62.6
Glyma.06G291400 Glycine max HOM05D004920 ORTHO05D005998 6.2e-71 271.6 148 86.5
vmacro15953 Vaccinium macrocarpon HOM05D004920 ORTHO05D005998 4.6e-66 255.4 271 50.6
THA.LOC104814688 Tarenaya hassleriana HOM05D004920 ORTHO05D005998 1.8e-65 253.4 169 69.2
QL04p069154 Quercus lobata HOM05D004920 ORTHO05D005998 5.9e-61 238.4 136 82.4
BcaB06g28732 Brassica carinata HOM05D004920 ORTHO05D005998 3.8e-60 235.7 220 54.1
Mapoly0023s0159 Marchantia polymorpha HOM05D004920 ORTHO05D005998 1.9e-59 233.4 213 52.6
AagrBONN_evm.TU.Sc2ySwM_228.2942 Anthoceros agrestis HOM05D004920 ORTHO05D005998 4.2e-59 232.3 189 56.6
FAN21G0445 Fragaria x ananassa HOM05D004920 ORTHO05D005998 4.6e-58 228.8 231 51.9
Pp3c14_19140 Physcomitrium patens HOM05D004920 ORTHO05D005998 5.7e-56 221.9 193 50.8
DCAR_004027 Daucus carota HOM05D004920 ORTHO05D005998 7.7e-53 211.5 203 52.7
SEGI_15656 Sequoiadendron giganteum HOM05D004920 ORTHO05D005998 7.7e-53 211.5 146 66.4
Glyma.04G173800 Glycine max HOM05D004920 ORTHO05D005998 2.2e-52 209.9 119 85.7
SMO196G0025 Selaginella moellendorffii HOM05D004920 ORTHO05D005998 3.7e-47 192.6 181 47.0
BcaC01g05809 Brassica carinata HOM05D004920 ORTHO05D005998 6.3e-47 191.8 154 59.1
SHI18442 Sapria himalayana HOM05D004920 ORTHO05D005998 2.0e-45 186.8 216 45.8
BolC3t14602H Brassica oleracea HOM05D004920 ORTHO05D005998 6.5e-44 181.8 169 53.8
COL.COLO4_31383 Corchorus olitorius HOM05D004920 ORTHO05D005998 1.1e-43 181.0 106 81.1
Prupe.4G056300 Prunus persica HOM05D004920 ORTHO05D005998 7.2e-43 178.3 124 63.7
Ca_26043_v3 Cicer arietinum L. HOM05D004920 ORTHO05D005998 1.2e-42 177.6 99 87.9
TAR626G0293 Trochodendron aralioides HOM05D004920 ORTHO05D005998 9.7e-40 167.9 99 79.8
Psat4g001400 Pisum sativum HOM05D004920 ORTHO05D005998 1.1e-38 164.5 134 61.9
Cpa.g.sc80.22 Carica papaya HOM05D004920 ORTHO05D005998 2.4e-38 163.3 99 79.8
unitig_60.g25415 Utricularia gibba HOM05D004920 ORTHO05D005998 5.9e-37 158.7 97 77.3
CAN.G160.23 Capsicum annuum HOM05D004920 ORTHO05D005998 3.2e-35 152.9 100 64.0
Cpa.g.sc12.156 Carica papaya HOM05D004920 ORTHO05D005998 3.0e-33 146.4 87 80.5
Zm00001eb237640 Zea mays HOM05D004920 ORTHO05D005998 2.2e-28 130.2 84 63.1
Os02g0312700 Oryza sativa ssp. japonica HOM05D004920 ORTHO05D005998 3.8e-28 129.4 84 64.3
BcaB01g03906 Brassica carinata HOM05D004920 ORTHO05D005998 2.3e-25 120.2 177 41.2
BcaC04g19340 Brassica carinata HOM05D001872 ORTHO05D005998 6.8e-25 118.6 77 74.0
CBR_g54210 Chara braunii HOM05D004920 ORTHO05D005998 8.8e-25 118.2 101 54.5
Cre10.g437050 Chlamydomonas reinhardtii HOM05D004920 ORTHO05D005998 8.8e-25 118.2 174 37.4
BcaC05g29287 Brassica carinata HOM05D001911 ORTHO05D001951 2.6e-24 116.7 72 76.4
BcaNung00861 Brassica carinata HOM05D001872 ORTHO05D001859 2.6e-24 116.7 72 76.4
BolC1t01767H Brassica oleracea HOM05D001872 ORTHO05D005998 2.6e-24 116.7 72 76.4
BolC7t45617H Brassica oleracea HOM05D001872 ORTHO05D001859 2.6e-24 116.7 72 76.4
C01p18450 Brassica napus HOM05D001872 ORTHO05D001859 9.8e-24 114.8 71 76.1
Medtr1g097870 Medicago truncatula HOM05D004920 ORTHO05D005998 1.8e-22 110.5 102 59.8
Glyma.06G291500 Glycine max HOM05D006477 ORTHO05D008311 2.7e-21 106.7 83 63.9
QL04p069158 Quercus lobata HOM05D004920 ORTHO05D005998 1.7e-20 104.0 72 63.9
PRCOL_00005737 Prasinoderma coloniale HOM05D004920 ORTHO05D005998 2.0e-16 90.5 182 30.8
MCO09G652 Micromonas commoda HOM05D004920 ORTHO05D005998 1.4e-14 84.3 117 35.0
Duzib192G0917 Durio zibethinus HOM05D004920 ORTHO05D005998 4.1e-14 82.8 110 43.6
A02p38170 Brassica napus HOM05D011482 ORTHO05D001953 2.7e-13 80.1 44 84.1
BraA02t08794Z Brassica rapa HOM05D001897 ORTHO05D001953 2.7e-13 80.1 44 84.1
Medtr1g097880 Medicago truncatula HOM05D004920 ORTHO05D005998 3.9e-12 76.3 94 47.9
Cpa.g.sc80.20 Carica papaya HOM05D009365 ORTHO05D000952 9.5e-11 71.6 48 70.8
Oeu062327.1 Olea europaea HOM05D004920 ORTHO05D005998 1.6e-10 70.9 42 78.6
BolC5t34235H Brassica oleracea HOM05D001872 ORTHO05D001859 2.1e-10 70.5 56 62.5
BcaC01g03531 Brassica carinata HOM05D004920 ORTHO05D094784 3.6e-10 69.7 122 36.9
BcaC01g04260 Brassica carinata HOM05D004920 ORTHO05D010632 4.7e-10 69.3 55 61.8
C03p43360 Brassica napus HOM05D004920 ORTHO05D010632 4.0e-09 66.2 35 85.7
BolC3t16607H Brassica oleracea HOM05D008686 ORTHO05D010632 4.0e-09 66.2 35 85.7
C03p13910 Brassica napus HOM05D004920 ORTHO05D005998 5.2e-09 65.9 40 75.0
SEGI_14350 Sequoiadendron giganteum HOM05D004920 ORTHO05D005998 1.5e-08 64.3 81 33.3
DCAR_032321 Daucus carota HOM05D004920 ORTHO05D005998 1.9e-06 57.4 55 38.2
Oeu019523.1 Olea europaea HOM05D004920 ORTHO05D005998 9.2e-06 55.1 40 52.5


User provided reference genes

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