Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G16245 Trifolium pratense HOM05D005619 ORTHO05D006696 4.6e-106 387.9 192 100.0
Medtr3g070470 Medicago truncatula HOM05D005619 ORTHO05D006696 5.1e-97 357.8 193 93.8
Psat5g128520 Pisum sativum HOM05D005619 ORTHO05D006696 2.0e-93 345.9 192 90.1
Lj1g0018800 Lotus japonicus HOM05D005619 ORTHO05D006696 3.9e-89 331.6 192 85.9
Lj6g0025019 Lotus japonicus HOM05D005619 ORTHO05D006696 3.9e-89 331.6 192 85.9
Lalb_Chr03g0027081 Lupinus albus HOM05D005619 ORTHO05D006696 2.5e-88 328.9 192 85.9
arahy.Tifrunner.gnm1.ann1.IDH5I9 Arachis hypogaea HOM05D005619 ORTHO05D006696 8.1e-87 323.9 192 84.9
Phvul.001G242800 Phaseolus vulgaris HOM05D005619 ORTHO05D006696 1.4e-86 323.2 192 83.9
arahy.Tifrunner.gnm1.ann1.2YL4XG Arachis hypogaea HOM05D005619 ORTHO05D006696 2.4e-86 322.4 192 83.9
Glyma.18G027600 Glycine max HOM05D005619 ORTHO05D006696 7.6e-85 317.4 192 83.3
VMungo1383G0062 Vigna mungo HOM05D005619 ORTHO05D006696 9.9e-85 317.0 189 82.5
Glyma.11G229600 Glycine max HOM05D005619 ORTHO05D006696 4.9e-84 314.7 192 81.8
Lalb_Chr01g0004131 Lupinus albus HOM05D005619 ORTHO05D006696 1.8e-81 306.2 213 75.6
QL08p063145 Quercus lobata HOM05D005619 ORTHO05D006696 9.6e-80 300.4 191 79.6
Cfa001322 Carpinus fangiana HOM05D005619 ORTHO05D006696 1.9e-75 286.2 192 76.6
Haze_17223 Corylus avellana HOM05D005619 ORTHO05D006696 2.4e-75 285.8 192 76.6
CANSAT56G2799 Cannabis sativa HOM05D005619 ORTHO05D006696 5.5e-75 284.6 192 72.4
GSVIVG01032822001 Vitis vinifera HOM05D005619 ORTHO05D006696 2.1e-74 282.7 193 72.5
Thecc.10G016900 Theobroma cacao HOM05D005619 ORTHO05D006696 1.0e-73 280.4 192 72.4
Sed0003089 Sechium edule HOM05D005619 ORTHO05D006696 3.9e-73 278.5 192 70.3
Cpa.g.sc19.176 Carica papaya HOM05D005619 ORTHO05D006696 8.7e-73 277.3 192 70.3
TAR369G0168 Trochodendron aralioides HOM05D005619 ORTHO05D006696 1.1e-72 276.9 193 70.5
Duzib128G1619 Durio zibethinus HOM05D005619 ORTHO05D006696 5.6e-72 274.6 192 70.8
CiPaw.02G192300 Carya illinoinensis HOM05D000781 ORTHO05D000643 1.3e-71 273.5 184 73.4
Duzib114G0170 Durio zibethinus HOM05D005619 ORTHO05D006696 1.3e-71 273.5 192 70.3
Gohir.A06G163800 Gossypium hirsutum HOM05D005619 ORTHO05D006696 4.8e-71 271.6 192 69.8
Gohir.D06G169500 Gossypium hirsutum HOM05D005619 ORTHO05D006696 4.8e-71 271.6 192 69.8
Gorai.010G198200 Gossypium raimondii HOM05D005619 ORTHO05D006696 4.8e-71 271.6 192 69.8
FAN01G2425 Fragaria x ananassa HOM05D005619 ORTHO05D006696 6.2e-71 271.2 192 69.8
CiPaw.08G091200 Carya illinoinensis HOM05D005619 ORTHO05D006696 1.1e-70 270.4 192 69.8
FAN10G0566 Fragaria x ananassa HOM05D005619 ORTHO05D006696 1.4e-70 270.0 192 69.8
RcHm_v2.0_Chr1g0370121 Rosa chinensis HOM05D005619 ORTHO05D006696 1.4e-70 270.0 192 69.3
Atru.chr12.29 Acer truncatum HOM05D005619 ORTHO05D006696 2.4e-70 269.2 191 67.5
Hund13861 Selenicereus undatus HOM05D005619 ORTHO05D006696 2.4e-70 269.2 193 66.8
THA.LOC104824313 Tarenaya hassleriana HOM05D005619 ORTHO05D006696 2.4e-70 269.2 188 69.1
FvH4_7g24440 Fragaria vesca HOM05D005619 ORTHO05D006696 3.1e-70 268.9 192 69.3
CsaV3_6G001830 Cucumis sativus L. HOM05D005619 ORTHO05D006696 4.0e-70 268.5 192 68.8
COL.COLO4_38547 Corchorus olitorius HOM05D005598 ORTHO05D006587 9.0e-70 267.3 192 70.3
Eucgr.G03057 Eucalyptus grandis HOM05D005619 ORTHO05D006696 9.0e-70 267.3 192 68.2
Sc11g0001040 Simmondsia chinensis HOM05D005619 ORTHO05D006696 2.0e-69 266.2 193 66.8
PGR142G0483 Punica granatum HOM05D005619 ORTHO05D006696 2.6e-69 265.8 192 68.8
Potri.008G068100 Populus trichocarpa HOM05D005619 ORTHO05D006696 5.8e-69 264.6 192 69.3
Thhalv10017287m.g Eutrema salsugineum HOM05D005619 ORTHO05D006696 7.6e-69 264.2 188 69.7
Nn2g11500 Nelumbo nucifera HOM05D005619 ORTHO05D006696 1.0e-68 263.8 192 66.7
Sabra08G0050000 Salix brachista HOM05D005619 ORTHO05D006696 2.2e-68 262.7 192 69.3
EL10Ac2g04534 Beta vulgaris HOM05D005619 ORTHO05D006696 3.8e-68 261.9 193 67.9
AL5G36640 Arabidopsis lyrata HOM05D005619 ORTHO05D006696 4.9e-68 261.5 192 66.7
AT1G19080 Arabidopsis thaliana HOM05D005619 ORTHO05D006696 4.9e-68 261.5 192 67.2
AT3G55490 Arabidopsis thaliana HOM05D005619 ORTHO05D006696 4.9e-68 261.5 192 67.2
Manes.04G157300 Manihot esculenta HOM05D005619 ORTHO05D006696 4.9e-68 261.5 192 68.2
Lj3A878T24 Lonicera japonica HOM05D005619 ORTHO05D006696 1.1e-67 260.4 192 67.2
MBI05_g05306_MAGBIO Magnolia biondii HOM05D005619 ORTHO05D006696 1.4e-67 260.0 190 64.7
Potri.010G189200 Populus trichocarpa HOM05D005619 ORTHO05D006696 1.9e-67 259.6 192 69.3
MD01G1152600 Malus domestica HOM05D005619 ORTHO05D006696 3.2e-67 258.8 192 64.6
AUR62034382 Chenopodium quinoa HOM05D005619 ORTHO05D006696 4.2e-67 258.5 193 67.4
ClCG11G006160 Citrullus lanatus HOM05D005619 ORTHO05D006696 4.2e-67 258.5 192 67.2
Dinv16155 Davidia involucrata HOM05D005619 ORTHO05D006696 7.1e-67 257.7 192 65.6
Aqoxy4G02564 Aquilegia oxysepala HOM05D005619 ORTHO05D006696 1.6e-66 256.5 193 64.8
AUR62022323 Chenopodium quinoa HOM05D005619 ORTHO05D006696 1.6e-66 256.5 193 67.4
BraA04t18498Z Brassica rapa HOM05D005619 ORTHO05D006696 4.6e-66 255.0 188 67.6
CARHR165540 Cardamine hirsuta HOM05D005619 ORTHO05D006696 4.6e-66 255.0 192 65.1
BcaNung05464 Brassica carinata HOM05D005619 ORTHO05D006696 7.9e-66 254.2 188 67.6
Actinidia31994 Actinidia chinensis HOM05D005619 ORTHO05D006696 1.3e-65 253.4 193 64.2
A04p30090 Brassica napus HOM05D005619 ORTHO05D006696 1.3e-65 253.4 185 68.1
CARHR135030 Cardamine hirsuta HOM05D005619 ORTHO05D006696 1.3e-65 253.4 192 66.7
Prupe.2G202300 Prunus persica HOM05D005619 ORTHO05D006696 1.3e-65 253.4 188 66.0
Prupe.2G249700 Prunus persica HOM05D005619 ORTHO05D006696 3.0e-65 252.3 188 65.4
BolC4t28280H Brassica oleracea HOM05D005619 ORTHO05D006696 6.7e-65 251.1 189 67.7
Ciclev10033435m.g Citrus clementina HOM05D005619 ORTHO05D006696 1.9e-64 249.6 177 68.4
Aqoxy5G02842 Aquilegia oxysepala HOM05D005619 ORTHO05D006696 2.5e-64 249.2 193 63.2
C04p67770 Brassica napus HOM05D005619 ORTHO05D006696 2.5e-64 249.2 189 67.7
BcaC02g07350 Brassica carinata HOM05D005619 ORTHO05D006696 4.3e-64 248.4 187 66.8
PSO339G2325 Papaver somniferum HOM05D005619 ORTHO05D006696 5.7e-64 248.1 189 63.5
Carub.0005s2221 Capsella rubella HOM05D005619 ORTHO05D006696 7.4e-64 247.7 192 63.5
Sp4g22380 Schrenkiella parvula HOM05D005619 ORTHO05D006696 7.4e-64 247.7 188 64.9
CSS0006168 Camellia sinensis var. sinensis HOM05D005619 ORTHO05D006696 2.8e-63 245.7 193 63.7
DCAR_026757 Daucus carota HOM05D005619 ORTHO05D006696 2.8e-63 245.7 192 64.1
SalBow8G4625 Salvia bowleyana HOM05D005619 ORTHO05D006696 8.2e-63 244.2 192 63.0
COL.COLO4_25718 Corchorus olitorius HOM05D005619 ORTHO05D006696 1.8e-62 243.0 192 65.6
Hma1.2p1_2256F.1_g318210 Hydrangea macrophylla HOM05D005619 ORTHO05D006696 1.8e-62 243.0 189 64.0
Oeu057772.1 Olea europaea HOM05D005619 ORTHO05D006696 6.9e-62 241.1 192 63.0
TWI53G0619 Tripterygium wilfordii HOM05D005619 ORTHO05D006696 9.0e-62 240.7 181 66.3
HanXRQChr08g0213181 Helianthus annuus HOM05D005619 ORTHO05D006696 3.4e-61 238.8 189 63.5
MSTRG.870 Avicennia marina HOM05D005619 ORTHO05D006696 7.6e-61 237.7 191 62.3
HanXRQChr15g0468911 Helianthus annuus HOM05D005619 ORTHO05D006696 1.7e-60 236.5 189 63.0
CDE04G2394 Ceratophyllum demersum HOM05D005619 ORTHO05D006696 2.9e-60 235.7 188 62.2
Migut.E00386 Erythranthe guttata HOM05D005619 ORTHO05D006696 6.5e-60 234.6 193 61.1
ECA233G2873 Erigeron canadensis HOM05D005619 ORTHO05D006696 4.2e-59 231.9 189 61.9
Lsat_1_v5_gn_8_41961 Lactuca sativa HOM05D005619 ORTHO05D006696 5.5e-59 231.5 189 61.9
SGA_v2.0_scaffold170G38815 Striga asiatica HOM05D005619 ORTHO05D006696 5.5e-59 231.5 192 59.9
Os08g0274700 Oryza sativa ssp. japonica HOM05D005619 ORTHO05D006696 7.2e-59 231.1 190 60.0
HPP92_000355 Vanilla planifolia HOM05D000755 ORTHO05D000642 7.2e-59 231.1 190 60.5
BcaC02g07392 Brassica carinata HOM05D005619 ORTHO05D006696 9.4e-59 230.7 170 68.2
HPP92_000422 Vanilla planifolia HOM05D000755 ORTHO05D006696 9.4e-59 230.7 190 60.0
unitig_52.g17125 Utricularia gibba HOM05D005619 ORTHO05D006696 2.7e-58 229.2 190 61.6
Zm00001eb412290 Zea mays HOM05D005619 ORTHO05D006696 6.1e-58 228.0 190 58.9
Peaxi162Scf00451g00930 Petunia axillaris HOM05D005619 ORTHO05D006696 3.0e-57 225.7 195 60.0
HanXRQChr09g0271791 Helianthus annuus HOM05D005619 ORTHO05D006696 1.1e-56 223.8 189 58.2
ATR0481G004 Amborella trichopoda HOM05D005619 ORTHO05D006696 1.5e-56 223.4 190 56.8
CAN.G1489.22 Capsicum annuum HOM05D005619 ORTHO05D006696 1.5e-56 223.4 195 60.5
Solyc05g008620.4 Solanum lycopersicum HOM05D005619 ORTHO05D006696 1.9e-56 223.0 195 59.5
Sopen05g004460 Solanum pennellii HOM05D005619 ORTHO05D006696 1.9e-56 223.0 195 59.5
Zm00001eb198650 Zea mays HOM05D005619 ORTHO05D006696 2.5e-56 222.6 190 58.4
Cc03_g10740 Coffea canephora HOM05D005619 ORTHO05D006696 3.3e-56 222.2 194 58.8
ECA247G2146 Erigeron canadensis HOM05D005619 ORTHO05D006696 4.3e-56 221.9 189 58.7
PGSC0003DMG400030566 Solanum tuberosum HOM05D005619 ORTHO05D006696 7.4e-56 221.1 195 59.0
TAR633G2706 Trochodendron aralioides HOM05D005619 ORTHO05D006696 1.3e-55 220.3 154 71.4
FAN06G3728 Fragaria x ananassa HOM05D005619 ORTHO05D006696 3.1e-54 215.7 155 68.4
SMO356G0622 Selaginella moellendorffii HOM05D005619 ORTHO05D006696 7.2e-51 204.5 191 52.4
SalBow8G2997 Salvia bowleyana HOM05D005619 ORTHO05D006696 1.6e-50 203.4 210 53.3
TWI73G0774 Tripterygium wilfordii HOM05D005619 ORTHO05D006696 1.0e-49 200.7 189 57.1
Nitab4.5_0000350g0020 Nicotiana tabacum HOM05D005619 ORTHO05D006696 3.9e-49 198.7 194 57.7
Mapoly0053s0030 Marchantia polymorpha HOM05D005619 ORTHO05D006696 2.6e-48 196.1 189 50.3
DCAR_023625 Daucus carota HOM05D005619 ORTHO05D006696 4.4e-48 195.3 154 61.7
Mapoly0034s0059 Marchantia polymorpha HOM05D005619 ORTHO05D006696 5.7e-48 194.9 189 49.7
MELO3C029903.2 Cucumis melo HOM05D005619 ORTHO05D006696 7.4e-48 194.5 206 53.9
Sabra10G0145900 Salix brachista HOM05D005619 ORTHO05D006696 4.8e-47 191.8 192 55.7
Peaxi162Scf00205g01136 Petunia axillaris HOM05D005619 ORTHO05D006696 6.3e-47 191.4 150 63.3
Cc03_g13530 Coffea canephora HOM05D005619 ORTHO05D006696 2.6e-45 186.0 171 55.6
CSS0006460 Camellia sinensis var. sinensis HOM05D005619 ORTHO05D006696 7.7e-45 184.5 174 55.7
Pp3c25_12660 Physcomitrium patens HOM05D005619 ORTHO05D006696 2.2e-44 183.0 188 47.3
C04p07340 Brassica napus HOM05D004515 ORTHO05D006013 3.2e-43 179.1 145 63.4
FAN06G2505 Fragaria x ananassa HOM05D005619 ORTHO05D006696 1.6e-42 176.8 155 60.6
AagrBONN_evm.TU.Sc2ySwM_344.729 Anthoceros agrestis HOM05D005619 ORTHO05D006696 2.3e-41 172.9 189 46.6
Nitab4.5_0003886g0110 Nicotiana tabacum HOM05D005619 ORTHO05D006696 1.1e-40 170.6 193 50.8
AagrBONN_evm.TU.Sc2ySwM_228.5247 Anthoceros agrestis HOM05D005619 ORTHO05D006696 2.0e-40 169.9 189 46.0
CARHR159370 Cardamine hirsuta HOM05D005619 ORTHO05D006696 8.2e-39 164.5 118 65.3
CBR_g38120 Chara braunii HOM05D005619 ORTHO05D006696 1.6e-37 160.2 193 40.9
Aa31LG5G19540 Aethionema arabicum HOM05D005619 ORTHO05D006696 1.0e-36 157.5 109 68.8
BolC4t22357H Brassica oleracea HOM05D004515 ORTHO05D006013 3.8e-28 129.0 145 48.3
ATR0568G146 Amborella trichopoda HOM05D005619 ORTHO05D006696 4.0e-25 119.0 118 50.0
AagrBONN_evm.TU.Sc2ySwM_344.737 Anthoceros agrestis HOM05D005619 ORTHO05D006696 9.8e-24 114.4 110 53.6
Actinidia33632 Actinidia chinensis HOM05D005619 ORTHO05D006696 1.4e-22 110.5 100 58.0
C04p07380 Brassica napus HOM05D005619 ORTHO05D006696 4.5e-21 105.5 135 45.9
BcaB08g35316 Brassica carinata HOM05D005619 ORTHO05D006696 5.5e-19 98.6 77 61.0
Thecc.10G017600 Theobroma cacao HOM05D009631 ORTHO05D011824 1.6e-18 97.1 83 62.7
Cre06.g251750 Chlamydomonas reinhardtii HOM05D005619 ORTHO05D006696 1.4e-17 94.0 191 29.3
HanXRQChr01g0017101 Helianthus annuus HOM05D005619 ORTHO05D006696 2.3e-17 93.2 68 67.6
MCO08G248 Micromonas commoda HOM05D005619 ORTHO05D006696 2.3e-17 93.2 171 31.6
HanXRQChr12g0375531 Helianthus annuus HOM05D005619 ORTHO05D006696 7.0e-14 81.6 78 50.0
QL03p009034 Quercus lobata HOM05D000946 ORTHO05D006696 4.0e-09 65.9 37 81.1


User provided reference genes

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