Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G16235 Trifolium pratense HOM05D005703 ORTHO05D006643 4.0e-207 724.5 372 100.0
Medtr4g071190 Medicago truncatula HOM05D005703 ORTHO05D006643 1.9e-153 546.2 373 78.3
Psat7g139960 Pisum sativum HOM05D005703 ORTHO05D006643 6.7e-146 521.2 347 81.6
Ca_20918_v3 Cicer arietinum L. HOM05D005703 ORTHO05D006643 1.4e-143 513.5 347 80.7
Lj3g0017018 Lotus japonicus HOM05D005703 ORTHO05D006643 1.5e-137 493.4 336 78.0
Glyma.11G112900 Glycine max HOM05D005703 ORTHO05D006643 2.8e-136 489.2 339 79.4
Glyma.12G038800 Glycine max HOM05D005703 ORTHO05D006643 1.9e-132 476.5 339 77.9
VMungo1127G0812 Vigna mungo HOM05D005703 ORTHO05D006643 2.7e-131 472.6 339 75.2
arahy.Tifrunner.gnm1.ann1.YBLQ63 Arachis hypogaea HOM05D005703 ORTHO05D006643 3.0e-130 469.2 329 76.6
Lalb_Chr03g0025421 Lupinus albus HOM05D005703 ORTHO05D006643 3.3e-129 465.7 333 75.1
Potri.004G160800 Populus trichocarpa HOM05D005703 ORTHO05D006643 1.8e-122 443.4 317 72.6
Atru.chr5.3109 Acer truncatum HOM05D005703 ORTHO05D006643 1.7e-120 436.8 327 69.4
Sabra04G0107600 Salix brachista HOM05D005703 ORTHO05D006643 6.3e-120 434.9 297 72.1
MD10G1066100 Malus domestica HOM05D005703 ORTHO05D006643 1.8e-119 433.3 278 77.0
CSS0001334 Camellia sinensis var. sinensis HOM05D005703 ORTHO05D006643 2.4e-119 433.0 288 75.7
CiPaw.06G130900 Carya illinoinensis HOM05D005703 ORTHO05D006643 9.1e-119 431.0 335 69.0
Cpa.g.sc150.43 Carica papaya HOM05D005703 ORTHO05D006643 1.6e-118 430.3 325 68.9
FvH4_2g10050 Fragaria vesca HOM05D005703 ORTHO05D006643 2.0e-118 429.9 282 74.5
Sopen01g052320 Solanum pennellii HOM05D005703 ORTHO05D006643 2.7e-118 429.5 281 76.9
Phvul.011G040900 Phaseolus vulgaris HOM05D005703 ORTHO05D006643 3.5e-118 429.1 256 84.0
RcHm_v2.0_Chr6g0266981 Rosa chinensis HOM05D005703 ORTHO05D006643 3.5e-118 429.1 284 73.2
Eucgr.D00178 Eucalyptus grandis HOM05D005703 ORTHO05D006643 5.9e-118 428.3 282 75.2
Manes.11G087800 Manihot esculenta HOM05D005703 ORTHO05D006643 5.9e-118 428.3 330 68.5
Solyc01g110160.4 Solanum lycopersicum HOM05D005703 ORTHO05D006643 5.9e-118 428.3 276 77.5
QL11p045612 Quercus lobata HOM05D005703 ORTHO05D006643 7.7e-118 427.9 337 68.2
Hma1.2p1_0066F.1_g035910 Hydrangea macrophylla HOM05D005703 ORTHO05D006643 2.2e-117 426.4 277 75.1
Gohir.D12G030600 Gossypium hirsutum HOM05D005703 ORTHO05D006643 8.5e-117 424.5 278 75.2
Thecc.02G078100 Theobroma cacao HOM05D005703 ORTHO05D006643 8.5e-117 424.5 281 75.1
GSVIVG01024205001 Vitis vinifera HOM05D005703 ORTHO05D006643 1.5e-116 423.7 327 68.8
Gorai.008G031500 Gossypium raimondii HOM05D005703 ORTHO05D006643 2.5e-116 422.9 278 74.8
TWI31G0330 Tripterygium wilfordii HOM05D005703 ORTHO05D006643 3.2e-116 422.5 283 74.9
arahy.Tifrunner.gnm1.ann1.R55P3J Arachis hypogaea HOM05D005703 ORTHO05D006643 4.2e-116 422.2 302 75.5
CsaV3_7G000370 Cucumis sativus L. HOM05D005703 ORTHO05D006643 4.2e-116 422.2 333 67.3
MELO3C002791.2 Cucumis melo HOM05D005703 ORTHO05D006643 5.5e-116 421.8 317 68.8
COL.COLO4_26014 Corchorus olitorius HOM05D005703 ORTHO05D006643 1.4e-114 417.2 283 73.5
Nn6g32200 Nelumbo nucifera HOM05D005703 ORTHO05D006643 5.2e-114 415.2 277 73.3
Actinidia27862 Actinidia chinensis HOM05D005703 ORTHO05D006643 8.8e-114 414.5 277 72.9
PGSC0003DMG400030971 Solanum tuberosum HOM05D005703 ORTHO05D006643 1.5e-113 413.7 348 64.4
Actinidia02238 Actinidia chinensis HOM05D005703 ORTHO05D006643 2.6e-113 412.9 279 73.1
Aqoxy5G01507 Aquilegia oxysepala HOM05D005703 ORTHO05D006643 3.4e-113 412.5 324 67.9
MSTRG.20056 Avicennia marina HOM05D005703 ORTHO05D006643 5.7e-113 411.8 295 69.8
Rhsim05G0069500 Rhododendron simsii HOM05D005703 ORTHO05D006643 6.3e-112 408.3 289 69.6
Ciclev10028680m.g Citrus clementina HOM05D005703 ORTHO05D006643 1.1e-111 407.5 315 67.0
THA.LOC104824803 Tarenaya hassleriana HOM05D005703 ORTHO05D006643 1.1e-111 407.5 281 71.5
Migut.B00193 Erythranthe guttata HOM05D005703 ORTHO05D006643 1.4e-111 407.1 276 73.9
Peaxi162Scf00016g00231 Petunia axillaris HOM05D005703 ORTHO05D006643 1.4e-111 407.1 294 70.7
AT2G21385 Arabidopsis thaliana HOM05D005703 ORTHO05D006643 2.4e-111 406.4 287 70.7
AUR62010417 Chenopodium quinoa HOM05D005703 ORTHO05D006643 9.2e-111 404.4 299 69.6
Carub.0004s0043 Capsella rubella HOM05D005703 ORTHO05D006643 1.2e-110 404.1 284 70.1
CARHR112270 Cardamine hirsuta HOM05D005703 ORTHO05D006643 1.6e-110 403.7 320 65.6
ECA234G1754 Erigeron canadensis HOM05D005703 ORTHO05D006643 4.5e-110 402.1 319 66.8
AL4G10560 Arabidopsis lyrata HOM05D005703 ORTHO05D006643 7.8e-110 401.4 335 63.6
AUR62016798 Chenopodium quinoa HOM05D005703 ORTHO05D006643 2.3e-109 399.8 363 60.9
FAN15G0097 Fragaria x ananassa HOM05D005703 ORTHO05D006643 2.9e-109 399.4 335 62.4
HanXRQChr12g0373591 Helianthus annuus HOM05D005703 ORTHO05D006643 2.9e-109 399.4 325 63.4
PSO170G4951 Papaver somniferum HOM05D005703 ORTHO05D006643 5.0e-109 398.7 289 67.8
Aa31LG7G15130 Aethionema arabicum HOM05D005703 ORTHO05D001153 6.6e-109 398.3 333 63.1
Prupe.8G088000 Prunus persica HOM05D005703 ORTHO05D006643 6.6e-109 398.3 347 62.2
Sp4g00560 Schrenkiella parvula HOM05D005703 ORTHO05D006643 1.1e-108 397.5 319 64.6
ATR0661G148 Amborella trichopoda HOM05D005703 ORTHO05D006643 2.5e-108 396.4 281 68.7
BraA09t41216Z Brassica rapa HOM05D005703 ORTHO05D006643 1.2e-107 394.0 287 69.7
Os09g0531100 Oryza sativa ssp. japonica HOM05D005703 ORTHO05D006643 1.2e-107 394.0 283 67.1
Sc14g0002020 Simmondsia chinensis HOM05D005703 ORTHO05D006643 3.6e-107 392.5 339 62.2
HPP92_025877 Vanilla planifolia HOM05D005703 ORTHO05D006643 8.0e-107 391.3 277 68.6
A09p58290 Brassica napus HOM05D005703 ORTHO05D006643 1.4e-106 390.6 286 69.6
C08p41580 Brassica napus HOM05D005703 ORTHO05D006643 4.0e-106 389.0 280 70.0
BolC8t51720H Brassica oleracea HOM05D005703 ORTHO05D006643 4.0e-106 389.0 281 70.1
Zm00001eb353590 Zea mays HOM05D005703 ORTHO05D006643 8.9e-106 387.9 289 65.1
Lsat_1_v5_gn_5_125081 Lactuca sativa HOM05D005703 ORTHO05D006643 1.3e-104 384.0 320 64.4
CDE09G1081 Ceratophyllum demersum HOM05D005703 ORTHO05D006643 1.7e-101 373.6 319 61.4
Nitab4.5_0011132g0020 Nicotiana tabacum HOM05D005703 ORTHO05D006643 8.6e-101 371.3 281 67.6
Thhalv10000241m.g Eutrema salsugineum HOM05D005703 ORTHO05D006643 6.2e-99 365.2 251 71.7
Dinv23475 Davidia involucrata HOM05D005703 ORTHO05D006643 6.8e-98 361.7 250 72.4
Haze_02308 Corylus avellana HOM05D005703 ORTHO05D006643 4.4e-97 359.0 344 58.1
SGA_v2.0_scaffold58G20483 Striga asiatica HOM05D005703 ORTHO05D006643 1.4e-95 354.0 311 61.1
SalBow6G5125 Salvia bowleyana HOM05D005703 ORTHO05D006643 1.6e-94 350.5 279 65.6
Hma1.2p1_0066F.1_g035920 Hydrangea macrophylla HOM05D005703 ORTHO05D006643 6.0e-94 348.6 277 64.6
MELO3C013421.2 Cucumis melo HOM05D005703 ORTHO05D006643 8.6e-93 344.7 341 58.7
EL10Ac9g21670 Beta vulgaris HOM05D005703 ORTHO05D006643 1.1e-92 344.4 298 60.7
ClCG02G004580 Citrullus lanatus HOM05D005703 ORTHO05D006643 1.7e-88 330.5 335 57.9
DCAR_022931 Daucus carota HOM05D005703 ORTHO05D006643 1.9e-87 327.0 337 53.4
Nitab4.5_0002723g0090 Nicotiana tabacum HOM05D005703 ORTHO05D006643 1.7e-85 320.5 336 54.2
FAN27G2042 Fragaria x ananassa HOM05D005703 ORTHO05D006643 4.3e-84 315.8 282 58.9
FAN24G3327 Fragaria x ananassa HOM05D005703 ORTHO05D006643 1.2e-83 314.3 282 58.9
FAN20G2472 Fragaria x ananassa HOM05D005703 ORTHO05D006643 2.1e-83 313.5 287 59.2
vmacro17444 Vaccinium macrocarpon HOM05D005703 ORTHO05D006643 3.6e-83 312.8 278 59.7
CANSAT11G2682 Cannabis sativa HOM05D005703 ORTHO05D006643 1.4e-82 310.8 280 61.1
Sed0007704 Sechium edule HOM05D005703 ORTHO05D006643 3.1e-82 309.7 217 72.8
Hund00227 Selenicereus undatus HOM05D005703 ORTHO05D006643 4.4e-81 305.8 332 53.9
Cc02_g17090 Coffea canephora HOM05D005703 ORTHO05D006643 7.1e-79 298.5 197 75.6
Mapoly0084s0041 Marchantia polymorpha HOM05D005703 ORTHO05D006643 9.2e-79 298.1 316 49.7
Cfa005074 Carpinus fangiana HOM05D005703 ORTHO05D006643 1.7e-77 293.9 247 65.2
Lj5C191G8 Lonicera japonica HOM05D005703 ORTHO05D006643 8.6e-77 291.6 284 57.7
Pp3c22_4620 Physcomitrium patens HOM05D005703 ORTHO05D006643 1.5e-76 290.8 276 52.2
SMO356G0671 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 3.4e-73 279.6 276 52.9
unitig_0.g54 Utricularia gibba HOM05D005703 ORTHO05D006643 1.3e-72 277.7 198 68.7
SMO290G0004 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 2.1e-70 270.4 274 51.8
SMO290G0013 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 2.1e-70 270.4 270 52.2
SMO356G0278 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 2.0e-65 253.8 270 50.7
Gohir.A12G041600 Gossypium hirsutum HOM05D005703 ORTHO05D006643 2.9e-64 250.0 162 77.2
BcaB06g27102 Brassica carinata HOM05D005703 ORTHO05D006643 3.8e-64 249.6 260 53.1
AagrBONN_evm.TU.Sc2ySwM_228.378 Anthoceros agrestis HOM05D005703 ORTHO05D006643 2.4e-58 230.3 193 60.1
BraA01t01909Z Brassica rapa HOM05D005703 ORTHO05D006643 4.0e-58 229.6 207 58.5
Duzib132G0736 Durio zibethinus HOM05D005703 ORTHO05D006643 5.8e-57 225.7 338 43.8
Thhalv10005656m.g Eutrema salsugineum HOM05D005703 ORTHO05D006643 5.5e-55 219.2 159 68.6
TAR381G0871 Trochodendron aralioides HOM05D005703 ORTHO05D006643 8.2e-43 178.7 135 66.7
BolC1t00937H Brassica oleracea HOM05D005703 ORTHO05D006643 1.4e-39 167.9 144 61.1
MBI01_g29867_MAGBIO Magnolia biondii HOM05D005703 ORTHO05D006643 4.6e-38 162.9 114 71.9
C01p09750 Brassica napus HOM05D005703 ORTHO05D006643 3.3e-36 156.8 186 47.8
BolC2t11489H Brassica oleracea HOM05D005703 ORTHO05D006643 5.9e-33 146.0 185 46.5
CBR_g49480 Chara braunii HOM05D005703 ORTHO05D006643 1.1e-31 141.7 249 32.5
BolC4t23697H Brassica oleracea HOM05D005703 ORTHO05D006643 6.1e-30 136.0 189 41.8
Potri.009G121902 Populus trichocarpa HOM05D005703 ORTHO05D006643 3.0e-29 133.7 104 67.3
Cre08.g372000 Chlamydomonas reinhardtii HOM05D005703 ORTHO05D006643 1.1e-28 131.7 284 30.6
BcaC04g19425 Brassica carinata HOM05D005703 ORTHO05D006643 1.3e-27 128.3 225 39.1
PRCOL_00000952 Prasinoderma coloniale HOM05D005703 ORTHO05D006643 3.7e-27 126.7 232 33.2
C04p21760 Brassica napus HOM05D005703 ORTHO05D006643 1.8e-26 124.4 213 37.6
C09p55850 Brassica napus HOM05D005703 ORTHO05D006643 9.1e-26 122.1 215 37.2
HanXRQChr14g0433731 Helianthus annuus HOM05D005703 ORTHO05D006643 1.2e-25 121.7 79 83.5
QL11p045593 Quercus lobata HOM05D005703 ORTHO05D006643 3.4e-25 120.2 72 75.0
BcaC01g06448 Brassica carinata HOM05D005703 ORTHO05D006643 1.3e-24 118.2 137 51.1
C02p54250 Brassica napus HOM05D005703 ORTHO05D006643 1.3e-24 118.2 211 38.9
QL11p045598 Quercus lobata HOM05D005703 ORTHO05D006643 6.1e-22 109.4 70 72.9
Cc02_g17080 Coffea canephora HOM05D005703 ORTHO05D006643 6.7e-21 105.9 69 72.5
SEGI_33335 Sequoiadendron giganteum HOM05D005703 ORTHO05D006643 1.3e-19 101.7 90 54.4
MBI01_g29866_MAGBIO Magnolia biondii HOM05D005703 ORTHO05D006643 7.0e-18 95.9 60 70.0
unitig_0.g53 Utricularia gibba HOM05D005703 ORTHO05D006643 9.1e-18 95.5 124 46.0
BolC1t00936H Brassica oleracea HOM05D005703 ORTHO05D006643 3.6e-14 83.6 60 65.0
C03p15450 Brassica napus HOM05D005703 ORTHO05D006643 4.7e-14 83.2 151 37.1
BcaC09g52221 Brassica carinata HOM05D005703 ORTHO05D006643 6.1e-14 82.8 60 66.7
C03p56750 Brassica napus HOM05D005703 ORTHO05D006643 6.7e-13 79.3 128 36.7
C03p56740 Brassica napus HOM05D005703 ORTHO05D006643 2.2e-11 74.3 77 50.6
Oeu037764.1 Olea europaea HOM05D005703 ORTHO05D006643 6.5e-08 62.8 35 77.1
CAN.G878.5 Capsicum annuum HOM05D000269 ORTHO05D000216 1.9e-07 61.2 39 66.7
AUR62033094 Chenopodium quinoa HOM05D005703 ORTHO05D006643 9.4e-07 58.9 152 32.9
Lsat_1_v5_gn_1_61800 Lactuca sativa HOM05D005428 ORTHO05D002547 9.4e-07 58.9 56 53.6


User provided reference genes

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