Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G16206 Trifolium pratense HOM05D004356 ORTHO05D005542 6.0e-233 810.4 403 100.0
TPR.G30120 Trifolium pratense HOM05D004356 ORTHO05D005542 6.2e-214 747.3 403 91.8
Ca_19032_v3 Cicer arietinum L. HOM05D004356 ORTHO05D005542 3.7e-206 721.5 403 89.3
Psat2g068800 Pisum sativum HOM05D004356 ORTHO05D005542 1.1e-197 693.3 403 86.6
Medtr5g065270 Medicago truncatula HOM05D004356 ORTHO05D005542 2.4e-197 692.2 405 86.4
Glyma.14G178900 Glycine max HOM05D004356 ORTHO05D005542 1.5e-188 662.9 413 80.9
Phvul.008G178500 Phaseolus vulgaris HOM05D004356 ORTHO05D005542 5.0e-187 657.9 405 82.2
Lj1g0019049 Lotus japonicus HOM05D004356 ORTHO05D005542 1.1e-186 656.8 405 82.5
Lalb_Chr10g0102631 Lupinus albus HOM05D004356 ORTHO05D005542 6.1e-185 651.0 404 82.7
VMungo0647G1889 Vigna mungo HOM05D004356 ORTHO05D005542 1.0e-184 650.2 405 81.0
Glyma.02G211300 Glycine max HOM05D004356 ORTHO05D005542 1.8e-181 639.4 409 79.7
arahy.Tifrunner.gnm1.ann1.QY7301 Arachis hypogaea HOM05D004356 ORTHO05D005542 3.2e-178 628.6 398 80.2
arahy.Tifrunner.gnm1.ann1.JC6ZCB Arachis hypogaea HOM05D004356 ORTHO05D005542 2.7e-177 625.5 399 79.9
QL09p016893 Quercus lobata HOM05D004356 ORTHO05D005542 5.2e-176 621.3 404 76.0
arahy.Tifrunner.gnm1.ann1.VLAW7V Arachis hypogaea HOM05D004356 ORTHO05D005542 1.5e-175 619.8 341 88.6
Lj1g0006758 Lotus japonicus HOM05D004356 ORTHO05D005542 8.2e-174 614.0 405 78.5
CANSAT21G1617 Cannabis sativa HOM05D004356 ORTHO05D005542 5.0e-171 604.7 405 73.8
RcHm_v2.0_Chr1g0327751 Rosa chinensis HOM05D004356 ORTHO05D005542 6.5e-171 604.4 395 75.9
COL.COLO4_11966 Corchorus olitorius HOM05D004356 ORTHO05D005542 1.9e-170 602.8 399 74.7
Atru.chr13.1064 Acer truncatum HOM05D004356 ORTHO05D005542 5.5e-170 601.3 408 72.3
Atru.chr13.1070 Acer truncatum HOM05D004356 ORTHO05D005542 5.5e-170 601.3 408 72.3
MD00G1136500 Malus domestica HOM05D004356 ORTHO05D005542 9.4e-170 600.5 396 75.0
MELO3C011060.2 Cucumis melo HOM05D004356 ORTHO05D005542 2.7e-169 599.0 405 73.1
CsaV3_2G030020 Cucumis sativus L. HOM05D004356 ORTHO05D005542 1.4e-168 596.7 405 72.6
Dinv42649 Davidia involucrata HOM05D004356 ORTHO05D005542 1.4e-168 596.7 403 73.4
MD15G1379800 Malus domestica HOM05D004356 ORTHO05D005542 1.8e-168 596.3 397 74.3
RcHm_v2.0_Chr7g0237731 Rosa chinensis HOM05D004356 ORTHO05D005542 5.2e-168 594.7 395 74.7
Haze_22357 Corylus avellana HOM05D004356 ORTHO05D005542 1.5e-167 593.2 441 67.8
CSS0046210 Camellia sinensis var. sinensis HOM05D004356 ORTHO05D005542 2.6e-167 592.4 405 72.8
FAN18G3440 Fragaria x ananassa HOM05D004356 ORTHO05D005542 2.6e-167 592.4 397 74.8
FvH4_5g36000 Fragaria vesca HOM05D004356 ORTHO05D005542 3.4e-167 592.0 397 74.8
Sed0016629 Sechium edule HOM05D004356 ORTHO05D005542 5.7e-167 591.3 393 75.1
GSVIVG01009120001 Vitis vinifera HOM05D004356 ORTHO05D005542 9.8e-167 590.5 403 72.7
Duzib093G1902 Durio zibethinus HOM05D004356 ORTHO05D005542 1.3e-166 590.1 400 74.0
FAN04G0906 Fragaria x ananassa HOM05D004356 ORTHO05D005542 1.3e-166 590.1 397 74.6
TAR381G1323 Trochodendron aralioides HOM05D004356 ORTHO05D005542 1.3e-166 590.1 401 72.6
Actinidia33114 Actinidia chinensis HOM05D004356 ORTHO05D005542 8.3e-166 587.4 405 72.8
Gohir.A05G222100 Gossypium hirsutum HOM05D004356 ORTHO05D005542 2.0e-164 582.8 408 72.5
Gohir.D05G224800 Gossypium hirsutum HOM05D004356 ORTHO05D005542 4.5e-164 581.6 399 71.9
Gorai.009G232200 Gossypium raimondii HOM05D004356 ORTHO05D005542 7.7e-164 580.9 399 71.7
CiPaw.16G056200 Carya illinoinensis HOM05D004356 ORTHO05D005542 1.0e-163 580.5 403 70.0
PGSC0003DMG400001802 Solanum tuberosum HOM05D004356 ORTHO05D005542 1.3e-163 580.1 400 70.5
Cc10_g15470 Coffea canephora HOM05D004356 ORTHO05D005542 2.2e-163 579.3 403 71.2
HanXRQChr02g0040341 Helianthus annuus HOM05D004356 ORTHO05D005542 2.2e-163 579.3 402 68.9
Nitab4.5_0004523g0040 Nicotiana tabacum HOM05D004356 ORTHO05D005542 2.2e-163 579.3 404 69.8
Solyc01g081300.4 Solanum lycopersicum HOM05D004356 ORTHO05D005542 2.2e-163 579.3 400 70.2
Ciclev10001304m.g Citrus clementina HOM05D004356 ORTHO05D005542 2.9e-163 578.9 413 70.5
Cc10_g15440 Coffea canephora HOM05D004356 ORTHO05D005542 5.0e-163 578.2 401 71.6
TWI56G1415 Tripterygium wilfordii HOM05D004356 ORTHO05D005542 5.0e-163 578.2 407 71.0
FAN08G0112 Fragaria x ananassa HOM05D004356 ORTHO05D005542 6.5e-163 577.8 424 70.0
AUR62027839 Chenopodium quinoa HOM05D004356 ORTHO05D005542 1.1e-162 577.0 409 70.4
Hund16880 Selenicereus undatus HOM05D004356 ORTHO05D005542 1.9e-162 576.2 414 70.3
Nitab4.5_0001788g0020 Nicotiana tabacum HOM05D004356 ORTHO05D005542 2.5e-162 575.9 404 70.3
vmacro04684 Vaccinium macrocarpon HOM05D004356 ORTHO05D005542 2.5e-162 575.9 421 67.7
ECA247G0627 Erigeron canadensis HOM05D004356 ORTHO05D005542 3.2e-162 575.5 402 69.2
Aqoxy1G00182 Aquilegia oxysepala HOM05D004356 ORTHO05D005542 4.2e-162 575.1 362 75.4
CAN.G992.8 Capsicum annuum HOM05D004356 ORTHO05D005542 4.2e-162 575.1 403 69.5
Migut.M02007 Erythranthe guttata HOM05D004356 ORTHO05D005542 4.2e-162 575.1 402 71.1
arahy.Tifrunner.gnm1.ann1.3Z7WCZ Arachis hypogaea HOM05D004356 ORTHO05D005542 1.2e-161 573.5 400 74.5
Rhsim07G0209000 Rhododendron simsii HOM05D004356 ORTHO05D005542 1.6e-161 573.2 424 67.9
Sopen01g032880 Solanum pennellii HOM05D004356 ORTHO05D005542 3.6e-161 572.0 338 78.7
Manes.18G062300 Manihot esculenta HOM05D004356 ORTHO05D005542 1.0e-160 570.5 393 72.3
Cc07_g18320 Coffea canephora HOM05D004356 ORTHO05D005542 1.4e-160 570.1 348 76.7
Aqoxy3G00172 Aquilegia oxysepala HOM05D004356 ORTHO05D005542 1.8e-160 569.7 398 70.4
Eucgr.F00397 Eucalyptus grandis HOM05D004356 ORTHO05D005542 1.8e-160 569.7 367 75.7
SGA_v2.0_scaffold175G39331 Striga asiatica HOM05D004356 ORTHO05D005542 2.3e-160 569.3 409 69.2
Oeu025262.1 Olea europaea HOM05D004356 ORTHO05D005542 2.6e-159 565.8 336 79.5
Lsat_1_v5_gn_1_2520 Lactuca sativa HOM05D004356 ORTHO05D005542 3.4e-159 565.5 402 69.7
SalBow8G3481 Salvia bowleyana HOM05D004356 ORTHO05D005542 3.4e-159 565.5 397 69.8
PGR102G1623 Punica granatum HOM05D004356 ORTHO05D005542 5.7e-159 564.7 397 69.5
PSO675G0521 Papaver somniferum HOM05D004356 ORTHO05D005542 7.5e-159 564.3 333 79.9
Ah.05g170540 Amaranthus hybridus HOM05D004356 ORTHO05D005542 2.2e-158 562.8 419 67.1
CSS0005507 Camellia sinensis var. sinensis HOM05D004356 ORTHO05D005542 2.2e-158 562.8 405 70.4
MSTRG.16368 Avicennia marina HOM05D004356 ORTHO05D005542 2.8e-158 562.4 369 71.8
PSO675G5075 Papaver somniferum HOM05D004356 ORTHO05D005542 2.8e-158 562.4 403 70.2
Peaxi162Scf00592g00454 Petunia axillaris HOM05D004356 ORTHO05D005542 2.8e-158 562.4 429 64.8
Duzib106G0787 Durio zibethinus HOM05D004356 ORTHO05D005542 1.4e-157 560.1 358 77.1
PSO017G1942 Papaver somniferum HOM05D004356 ORTHO05D005542 1.8e-157 559.7 395 70.1
Cfa013712 Carpinus fangiana HOM05D004356 ORTHO05D005542 1.2e-156 557.0 405 69.4
ATR0022G038 Amborella trichopoda HOM05D004356 ORTHO05D005542 2.7e-156 555.8 335 78.5
EL10Ac9g21432 Beta vulgaris HOM05D000128 ORTHO05D005542 4.5e-156 555.1 346 76.9
THA.LOC104816870 Tarenaya hassleriana HOM05D004356 ORTHO05D005542 1.1e-154 550.4 338 76.0
unitig_37.g12048 Utricularia gibba HOM05D004356 ORTHO05D005542 1.2e-153 547.0 382 69.6
CDE04G0095 Ceratophyllum demersum HOM05D004356 ORTHO05D005542 4.7e-153 545.0 335 77.3
Thhalv10020825m.g Eutrema salsugineum HOM05D004356 ORTHO05D005542 4.7e-153 545.0 350 73.7
AT3G21110 Arabidopsis thaliana HOM05D004356 ORTHO05D005542 2.3e-152 542.7 350 74.0
AL3G35050 Arabidopsis lyrata HOM05D004356 ORTHO05D005542 3.0e-152 542.3 350 73.7
Dinv44826 Davidia involucrata HOM05D004356 ORTHO05D005542 3.0e-152 542.3 369 71.5
CARHR096940 Cardamine hirsuta HOM05D004356 ORTHO05D005542 4.0e-152 542.0 393 67.9
Thecc.08G065800 Theobroma cacao HOM05D004356 ORTHO05D005542 4.0e-152 542.0 298 86.9
A03p42020 Brassica napus HOM05D004356 ORTHO05D005542 1.5e-151 540.0 352 73.9
Aa31LG8G7830 Aethionema arabicum HOM05D004356 ORTHO05D005542 2.0e-151 539.7 345 74.5
A01p33740 Brassica napus HOM05D004356 ORTHO05D005542 2.0e-151 539.7 360 71.1
Carub.0003s2101 Capsella rubella HOM05D004356 ORTHO05D005542 2.0e-151 539.7 349 73.9
Carub.0003s2106 Capsella rubella HOM05D004356 ORTHO05D005542 3.4e-151 538.9 348 73.6
Os09g0467100 Oryza sativa ssp. japonica HOM05D004356 ORTHO05D005542 3.4e-151 538.9 327 77.4
BraA03t13356Z Brassica rapa HOM05D004356 ORTHO05D005542 4.4e-151 538.5 355 73.2
Zm00001eb284720 Zea mays HOM05D004356 ORTHO05D005542 7.5e-151 537.7 330 76.7
BcaB04g19136 Brassica carinata HOM05D004356 ORTHO05D005542 9.8e-151 537.3 401 66.6
arahy.Tifrunner.gnm1.ann1.1YQ32R Arachis hypogaea HOM05D004356 ORTHO05D005542 1.3e-150 537.0 326 81.0
AUR62018997 Chenopodium quinoa HOM05D004356 ORTHO05D005542 2.2e-150 536.2 393 68.2
HPP92_011797 Vanilla planifolia HOM05D004356 ORTHO05D005542 3.7e-150 535.4 335 75.2
BolC3t17429H Brassica oleracea HOM05D004356 ORTHO05D005542 8.3e-150 534.3 352 72.7
BraA01t03487Z Brassica rapa HOM05D004356 ORTHO05D005542 7.0e-149 531.2 343 73.8
Sabra17G0038400 Salix brachista HOM05D004356 ORTHO05D005542 1.0e-147 527.3 409 67.5
Sabra17G0043000 Salix brachista HOM05D004356 ORTHO05D005542 1.0e-147 527.3 409 67.5
Potri.017G051500 Populus trichocarpa HOM05D004356 ORTHO05D005542 1.1e-146 523.9 363 71.9
Sabra17G0037700 Salix brachista HOM05D004356 ORTHO05D005542 4.3e-146 521.9 409 67.0
BcaB04g20611 Brassica carinata HOM05D004356 ORTHO05D005542 8.0e-145 517.7 360 69.4
arahy.Tifrunner.gnm1.ann1.L8UQBM Arachis hypogaea HOM05D004356 ORTHO05D005542 1.8e-144 516.5 279 88.2
BcaC01g03528 Brassica carinata HOM05D004356 ORTHO05D004900 1.2e-143 513.8 345 70.7
SEGI_03509 Sequoiadendron giganteum HOM05D004356 ORTHO05D005542 1.3e-142 510.4 338 72.8
Prupe.1G526100 Prunus persica HOM05D004356 ORTHO05D005542 8.3e-142 507.7 283 84.1
Sp3g19060 Schrenkiella parvula HOM05D004356 ORTHO05D005542 1.6e-140 503.4 350 70.0
Mapoly0044s0034 Marchantia polymorpha HOM05D004356 ORTHO05D005542 3.0e-139 499.2 333 69.4
C03p51440 Brassica napus HOM05D004356 ORTHO05D005542 4.3e-138 495.4 359 68.0
Pp3c23_9790 Physcomitrium patens HOM05D004356 ORTHO05D005542 2.8e-137 492.7 387 63.0
Carub.0043s0008 Capsella rubella HOM05D004356 ORTHO05D005542 1.1e-136 490.7 297 76.4
C01p43120 Brassica napus HOM05D004356 ORTHO05D005542 4.4e-135 485.3 301 75.7
BolC1t04259H Brassica oleracea HOM05D004356 ORTHO05D005542 4.4e-135 485.3 301 75.7
AagrBONN_evm.TU.Sc2ySwM_344.5470 Anthoceros agrestis HOM05D004356 ORTHO05D005542 3.7e-134 482.3 328 67.7
Carub.0043s0006 Capsella rubella HOM05D004356 ORTHO05D005542 1.0e-131 474.2 350 67.1
SMO340G0097 Selaginella moellendorffii HOM05D004356 ORTHO05D005542 3.0e-131 472.6 376 61.7
CBR_g27760 Chara braunii HOM05D004356 ORTHO05D005542 8.9e-128 461.1 333 64.3
Sc23g0000510 Simmondsia chinensis HOM05D004356 ORTHO05D005542 2.4e-125 453.0 326 69.3
Lj4C732G13 Lonicera japonica HOM05D004356 ORTHO05D005542 4.1e-125 452.2 434 58.1
Carub.0043s0010 Capsella rubella HOM05D004356 ORTHO05D005542 7.3e-122 441.4 335 65.1
SHI20358 Sapria himalayana HOM05D004356 ORTHO05D005542 1.4e-120 437.2 339 64.6
Cre03.g202113 Chlamydomonas reinhardtii HOM05D004356 ORTHO05D005542 9.0e-112 407.9 350 55.7
Cpa.g.sc198.38 Carica papaya HOM05D004356 ORTHO05D005542 1.8e-107 393.7 263 72.6
MCO12G379 Micromonas commoda HOM05D004356 ORTHO05D005542 1.3e-105 387.5 319 58.6
Gohir.A05G222001 Gossypium hirsutum HOM05D004356 ORTHO05D005542 2.8e-105 386.3 318 64.2
PRCOL_00002575 Prasinoderma coloniale HOM05D004356 ORTHO05D005542 3.2e-101 372.9 295 60.0
CiPaw.16G030800 Carya illinoinensis HOM05D004356 ORTHO05D005542 3.9e-99 365.9 331 56.8
arahy.Tifrunner.gnm1.ann1.PGQR8U Arachis hypogaea HOM05D004356 ORTHO05D005542 5.5e-93 345.5 386 53.9
Actinidia29604 Actinidia chinensis HOM05D004356 ORTHO05D005542 1.8e-83 313.9 188 78.7
Nn1g08498 Nelumbo nucifera HOM05D004356 ORTHO05D005542 2.3e-83 313.5 251 65.7
ClCG00G002050 Citrullus lanatus HOM05D004356 ORTHO05D005542 3.0e-83 313.2 196 76.0
ClCG08G011430 Citrullus lanatus HOM05D004356 ORTHO05D005542 1.1e-74 284.6 163 83.4
Nn1g08495 Nelumbo nucifera HOM05D004356 ORTHO05D005542 2.0e-74 283.9 157 85.4
RcHm_v2.0_Chr3g0491851 Rosa chinensis HOM05D004356 ORTHO05D005542 5.9e-71 272.3 275 54.2
arahy.Tifrunner.gnm1.ann1.HK5GW2 Arachis hypogaea HOM05D004356 ORTHO05D005542 3.1e-64 250.0 242 58.3
Carub.0516s0001 Capsella rubella HOM05D004356 ORTHO05D005542 1.2e-63 248.1 145 76.6
arahy.Tifrunner.gnm1.ann1.X0GHYT Arachis hypogaea HOM05D004356 ORTHO05D005542 9.4e-61 238.4 235 57.4
arahy.Tifrunner.gnm1.ann1.F88CCI Arachis hypogaea HOM05D004356 ORTHO05D005542 1.2e-60 238.0 306 48.0
DCAR_012871 Daucus carota HOM05D004356 ORTHO05D005542 9.7e-58 228.4 298 44.6
Psat0s4321g0120 Pisum sativum HOM05D004356 ORTHO05D005542 4.2e-53 213.0 116 89.7
arahy.Tifrunner.gnm1.ann1.D1TUAT Arachis hypogaea HOM05D004356 ORTHO05D005542 6.8e-51 205.7 132 78.8
arahy.Tifrunner.gnm1.ann1.F3AJY4 Arachis hypogaea HOM05D004356 ORTHO05D005542 1.2e-50 204.9 181 64.1
arahy.Tifrunner.gnm1.ann1.FASD2W Arachis hypogaea HOM05D004356 ORTHO05D005542 1.2e-47 194.9 181 63.0
arahy.Tifrunner.gnm1.ann1.MUPT6T Arachis hypogaea HOM05D004356 ORTHO05D005542 1.2e-47 194.9 181 63.0
arahy.Tifrunner.gnm1.ann1.6VP8YS Arachis hypogaea HOM05D004356 ORTHO05D005542 3.6e-44 183.3 122 77.9
arahy.Tifrunner.gnm1.ann1.H4UIY2 Arachis hypogaea HOM05D004356 ORTHO05D005542 8.3e-33 145.6 159 54.1
arahy.Tifrunner.gnm1.ann1.JXGW17 Arachis hypogaea HOM05D004356 ORTHO05D005542 8.3e-33 145.6 159 54.1
Psat0s4321g0080 Pisum sativum HOM05D003122 ORTHO05D012218 5.4e-32 142.9 100 77.0
EL10As8g23848 Beta vulgaris HOM05D004356 ORTHO05D090264 8.6e-30 135.6 231 38.5
Cfa024383 Carpinus fangiana HOM05D004356 ORTHO05D124745 9.5e-21 105.5 172 37.2
Zm00001eb297900 Zea mays HOM05D004356 ORTHO05D005542 2.2e-17 94.4 53 75.5
Zm00001eb297960 Zea mays HOM05D004356 ORTHO05D444542 2.2e-17 94.4 53 75.5
arahy.Tifrunner.gnm1.ann1.8IDC4C Arachis hypogaea HOM05D004356 ORTHO05D005542 7.8e-15 85.9 51 80.4
arahy.Tifrunner.gnm1.ann1.03U3FR Arachis hypogaea HOM05D036434 ORTHO05D085949 9.9e-10 68.9 56 66.1
arahy.Tifrunner.gnm1.ann1.E3H3WY Arachis hypogaea HOM05D000075 ORTHO05D000073 9.9e-10 68.9 44 79.5
arahy.Tifrunner.gnm1.ann1.E7EHDM Arachis hypogaea HOM05D036434 ORTHO05D085916 9.9e-10 68.9 56 66.1
arahy.Tifrunner.gnm1.ann1.J07EWC Arachis hypogaea HOM05D004356 ORTHO05D005542 9.9e-10 68.9 39 87.2
SHI20361 Sapria himalayana HOM05D004356 ORTHO05D365714 1.9e-08 64.7 47 61.7


User provided reference genes

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