Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G1619 Trifolium pratense HOM05D007682 ORTHO05D009690 1.1e-29 134.0 71 100.0
Psat3g011680 Pisum sativum HOM05D007682 ORTHO05D009690 2.1e-28 129.8 71 95.8
Medtr7g112600 Medicago truncatula HOM05D007682 ORTHO05D009690 3.1e-27 125.9 69 97.1
Glyma.19G231600 Glycine max HOM05D007682 ORTHO05D009690 2.9e-25 119.4 71 88.7
Phvul.006G088300 Phaseolus vulgaris HOM05D007682 ORTHO05D009690 2.4e-24 116.3 71 85.9
Lalb_Chr15g0077471 Lupinus albus HOM05D007682 ORTHO05D009690 3.2e-24 115.9 68 91.2
Glyma.03G234200 Glycine max HOM05D007682 ORTHO05D009690 4.6e-23 112.1 67 89.6
arahy.Tifrunner.gnm1.ann1.S47DRU Arachis hypogaea HOM05D007682 ORTHO05D009690 1.3e-22 110.5 65 89.2
arahy.Tifrunner.gnm1.ann1.P6132C Arachis hypogaea HOM05D007682 ORTHO05D009690 1.8e-22 110.2 65 89.2
Haze_04118 Corylus avellana HOM05D007682 ORTHO05D009690 1.5e-21 107.1 70 80.0
Gorai.007G301900 Gossypium raimondii HOM05D007682 ORTHO05D009690 2.5e-21 106.3 61 91.8
Nitab4.5_0003113g0070 Nicotiana tabacum HOM05D007682 ORTHO05D009690 2.5e-21 106.3 61 91.8
Manes.08G115600 Manihot esculenta HOM05D007682 ORTHO05D009690 5.6e-21 105.1 61 90.2
Peaxi162Scf00037g01515 Petunia axillaris HOM05D007682 ORTHO05D009690 5.6e-21 105.1 61 90.2
Gohir.D11G279700 Gossypium hirsutum HOM05D007682 ORTHO05D009690 7.4e-21 104.8 61 90.2
Prupe.8G021600 Prunus persica HOM05D007682 ORTHO05D009690 7.4e-21 104.8 64 85.9
CAN.G1273.42 Capsicum annuum HOM05D007682 ORTHO05D009690 9.6e-21 104.4 60 91.7
Gohir.A11G269500 Gossypium hirsutum HOM05D007682 ORTHO05D009690 9.6e-21 104.4 61 90.2
Solyc01g099930.3 Solanum lycopersicum HOM05D007682 ORTHO05D009690 9.6e-21 104.4 66 87.9
Gohir.A08G208100 Gossypium hirsutum HOM05D007682 ORTHO05D009690 1.3e-20 104.0 61 90.2
PGR031G1366 Punica granatum HOM05D007682 ORTHO05D009690 1.3e-20 104.0 71 76.1
Duzib177G0692 Durio zibethinus HOM05D007682 ORTHO05D009690 2.1e-20 103.2 59 93.2
RcHm_v2.0_Chr6g0276771 Rosa chinensis HOM05D007682 ORTHO05D009690 2.1e-20 103.2 61 88.5
Gohir.D08G224900 Gossypium hirsutum HOM05D007682 ORTHO05D009690 4.8e-20 102.1 61 88.5
FAN20G0672 Fragaria x ananassa HOM05D007682 ORTHO05D009690 6.2e-20 101.7 61 86.9
FAN24G1339 Fragaria x ananassa HOM05D007682 ORTHO05D009690 6.2e-20 101.7 61 86.9
Thecc.05G315600 Theobroma cacao HOM05D007682 ORTHO05D009690 6.2e-20 101.7 61 90.2
Eucgr.H03256 Eucalyptus grandis HOM05D007682 ORTHO05D009690 8.2e-20 101.3 67 80.6
Atru.chr2.100 Acer truncatum HOM05D007682 ORTHO05D009690 1.4e-19 100.5 65 83.1
Actinidia21502 Actinidia chinensis HOM05D007682 ORTHO05D009690 1.4e-19 100.5 61 86.9
Lsat_1_v5_gn_7_72960 Lactuca sativa HOM05D007682 ORTHO05D009690 1.4e-19 100.5 68 80.9
GSVIVG01031165001 Vitis vinifera HOM05D000036 ORTHO05D000441 1.4e-19 100.5 61 86.9
Gorai.004G238900 Gossypium raimondii HOM05D007682 ORTHO05D009690 1.8e-19 100.1 61 86.9
Hma1.2p1_0472F.1_g159680 Hydrangea macrophylla HOM05D007682 ORTHO05D009690 1.8e-19 100.1 61 86.9
MD10G1017700 Malus domestica HOM05D007682 ORTHO05D009690 1.8e-19 100.1 61 86.9
Os12g0516700 Oryza sativa ssp. japonica HOM05D007682 ORTHO05D009690 3.1e-19 99.4 68 72.1
PSO407G0292 Papaver somniferum HOM05D007682 ORTHO05D009690 4.0e-19 99.0 65 81.5
FAN15G0817 Fragaria x ananassa HOM05D007682 ORTHO05D009690 6.9e-19 98.2 61 85.2
Os12g0554000 Oryza sativa ssp. japonica HOM05D007682 ORTHO05D009690 6.9e-19 98.2 65 73.8
Potri.005G023000 Populus trichocarpa HOM05D007682 ORTHO05D009690 6.9e-19 98.2 65 80.0
TAR633G0769 Trochodendron aralioides HOM05D007682 ORTHO05D009690 6.9e-19 98.2 65 80.0
HanXRQChr11g0340111 Helianthus annuus HOM05D007682 ORTHO05D009690 9.0e-19 97.8 71 74.6
PSO170G1207 Papaver somniferum HOM05D007682 ORTHO05D009690 9.0e-19 97.8 61 83.6
CSS0049840 Camellia sinensis var. sinensis HOM05D007682 ORTHO05D009690 1.2e-18 97.4 61 83.6
THA.LOC104818730 Tarenaya hassleriana HOM05D007682 ORTHO05D009690 1.2e-18 97.4 61 85.2
CDE05G1347 Ceratophyllum demersum HOM05D007682 ORTHO05D009690 1.5e-18 97.1 58 86.2
ECA236G4368 Erigeron canadensis HOM05D000036 ORTHO05D000441 1.5e-18 97.1 59 84.7
Lj1g0016295 Lotus japonicus HOM05D007682 ORTHO05D009690 1.5e-18 97.1 69 79.7
Nn4g25761 Nelumbo nucifera HOM05D007682 ORTHO05D009690 1.5e-18 97.1 61 82.0
Sed0011876 Sechium edule HOM05D007682 ORTHO05D009690 1.5e-18 97.1 61 83.6
CsaV3_1G038640 Cucumis sativus L. HOM05D007682 ORTHO05D009690 2.0e-18 96.7 61 83.6
Sp2g20980 Schrenkiella parvula HOM05D007682 ORTHO05D009690 2.0e-18 96.7 59 86.4
THA.LOC104821730 Tarenaya hassleriana HOM05D007682 ORTHO05D009690 2.6e-18 96.3 61 83.6
TWI56G1223 Tripterygium wilfordii HOM05D007682 ORTHO05D009690 2.6e-18 96.3 61 82.0
A06p37270 Brassica napus HOM05D007682 ORTHO05D009690 3.4e-18 95.9 59 84.7
C07p41180 Brassica napus HOM05D007682 ORTHO05D009690 3.4e-18 95.9 59 84.7
BolC7t44646H Brassica oleracea HOM05D007682 ORTHO05D009690 3.4e-18 95.9 59 84.7
BraA06t26650Z Brassica rapa HOM05D007682 ORTHO05D009690 3.4e-18 95.9 59 84.7
CARHR186340 Cardamine hirsuta HOM05D007682 ORTHO05D009690 3.4e-18 95.9 59 86.4
CDE11G0615 Ceratophyllum demersum HOM05D007682 ORTHO05D009690 3.4e-18 95.9 65 78.5
HPP92_010663 Vanilla planifolia HOM05D007682 ORTHO05D009690 3.4e-18 95.9 71 77.5
Aa31LG11G9610 Aethionema arabicum HOM05D007682 ORTHO05D009690 4.5e-18 95.5 59 84.7
CiPaw.08G159600 Carya illinoinensis HOM05D007682 ORTHO05D009690 4.5e-18 95.5 61 82.0
Cc02_g34370 Coffea canephora HOM05D007682 ORTHO05D009690 4.5e-18 95.5 60 83.3
SGA_v2.0_scaffold81G26104 Striga asiatica HOM05D007682 ORTHO05D009690 5.8e-18 95.1 61 80.3
BcaNung04745 Brassica carinata HOM05D007682 ORTHO05D009690 7.6e-18 94.7 59 83.1
AT5G27860 Arabidopsis thaliana HOM05D007682 ORTHO05D009690 1.0e-17 94.4 59 84.7
QL03p019528 Quercus lobata HOM05D007682 ORTHO05D009690 1.0e-17 94.4 63 77.8
Sabra05G0029000 Salix brachista HOM05D007682 ORTHO05D009690 1.3e-17 94.0 61 82.0
Oeu010924.1 Olea europaea HOM05D007682 ORTHO05D009690 1.7e-17 93.6 61 80.3
Cfa006654 Carpinus fangiana HOM05D007682 ORTHO05D009690 2.9e-17 92.8 64 76.6
DCAR_022138 Daucus carota HOM05D007682 ORTHO05D009690 2.9e-17 92.8 66 74.2
Migut.N02098 Erythranthe guttata HOM05D007682 ORTHO05D009690 2.9e-17 92.8 61 80.3
Nitab4.5_0003497g0050 Nicotiana tabacum HOM05D007682 ORTHO05D009690 4.9e-17 92.0 52 92.3
AUR62000737 Chenopodium quinoa HOM05D007682 ORTHO05D009690 6.5e-17 91.7 60 78.3
SMO367G0406 Selaginella moellendorffii HOM05D007682 ORTHO05D009690 8.4e-17 91.3 65 70.8
Sc16g0008750 Simmondsia chinensis HOM05D000036 ORTHO05D001038 8.4e-17 91.3 61 78.7
SEGI_39810 Sequoiadendron giganteum HOM05D007682 ORTHO05D009690 1.1e-16 90.9 60 76.7
Dinv30837 Davidia involucrata HOM05D007682 ORTHO05D009690 2.5e-16 89.7 61 77.0
AUR62005227 Chenopodium quinoa HOM05D007682 ORTHO05D009690 3.2e-16 89.4 60 75.0
MSTRG.27972 Avicennia marina HOM05D007682 ORTHO05D009690 4.2e-16 89.0 60 76.7
Zm00001eb410110 Zea mays HOM05D007682 ORTHO05D009690 3.5e-15 85.9 63 71.4
AL6G39080 Arabidopsis lyrata HOM05D007682 ORTHO05D009690 1.0e-14 84.3 59 78.0
CSS0031357 Camellia sinensis var. sinensis HOM05D007682 ORTHO05D009690 3.9e-14 82.4 66 66.7
Hund07111 Selenicereus undatus HOM05D007682 ORTHO05D009690 8.7e-14 81.3 86 59.3
MBI19_g44105_MAGBIO Magnolia biondii HOM05D007682 ORTHO05D009690 3.3e-13 79.3 54 75.9
Ah.06g189950 Amaranthus hybridus HOM05D007682 ORTHO05D009690 5.7e-13 78.6 51 78.4
unitig_699.g19250 Utricularia gibba HOM05D007682 ORTHO05D009690 5.7e-13 78.6 50 78.0
EL10Ac4g09894 Beta vulgaris HOM05D007682 ORTHO05D009690 9.7e-13 77.8 51 76.5
ATR0693G225 Amborella trichopoda HOM05D007682 ORTHO05D009690 1.6e-12 77.0 52 76.9
HPP92_010684 Vanilla planifolia HOM05D007682 ORTHO05D009690 6.3e-12 75.1 53 77.4
DCAR_022140 Daucus carota HOM05D007682 ORTHO05D009690 3.1e-11 72.8 55 69.1
MBI19_g47767_MAGBIO Magnolia biondii HOM05D007682 ORTHO05D009690 4.2e-08 62.4 54 64.8
VMungo0540G1787 Vigna mungo HOM05D007682 ORTHO05D009690 4.6e-07 58.9 35 82.9
COL.COLO4_10551 Corchorus olitorius HOM05D007682 ORTHO05D009690 7.9e-07 58.2 33 90.9
FvH4_2g14440 Fragaria vesca HOM05D007682 ORTHO05D009690 2.3e-06 56.6 34 79.4


User provided reference genes

Program Settings