Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G16160 Trifolium pratense HOM05D004544 ORTHO05D005504 4.4e-256 887.5 454 100.0
Medtr2g062270 Medicago truncatula HOM05D004544 ORTHO05D005504 1.0e-233 813.1 454 91.2
Psat1g129360 Pisum sativum HOM05D004544 ORTHO05D005504 2.0e-229 798.9 454 89.2
Ca_03221_v3 Cicer arietinum L. HOM05D004544 ORTHO05D005504 6.6e-220 767.3 454 85.0
Glyma.08G158600 Glycine max HOM05D004544 ORTHO05D005504 1.6e-213 746.1 454 81.7
Glyma.15G267700 Glycine max HOM05D004544 ORTHO05D005504 3.0e-212 741.9 454 82.2
Lj3g0003623 Lotus japonicus HOM05D004544 ORTHO05D005504 9.5e-211 736.9 454 80.8
Phvul.005G042600 Phaseolus vulgaris HOM05D004544 ORTHO05D005504 2.2e-207 725.7 454 79.7
VMungo1080G0174 Vigna mungo HOM05D004544 ORTHO05D005504 1.9e-206 722.6 454 79.1
Lalb_Chr25g0283741 Lupinus albus HOM05D004544 ORTHO05D005504 8.6e-204 713.8 454 79.7
arahy.Tifrunner.gnm1.ann1.HLF3VC Arachis hypogaea HOM05D004544 ORTHO05D005504 9.5e-203 710.3 482 75.7
arahy.Tifrunner.gnm1.ann1.ZSC88Q Arachis hypogaea HOM05D004544 ORTHO05D005504 2.8e-202 708.8 482 75.5
Atru.chr12.1432 Acer truncatum HOM05D004544 ORTHO05D005504 2.5e-187 659.1 452 73.9
Ciclev10031412m.g Citrus clementina HOM05D004544 ORTHO05D005504 5.4e-182 641.3 468 68.6
CANSAT11G0055 Cannabis sativa HOM05D004544 ORTHO05D005504 1.6e-181 639.8 454 71.1
Thecc.08G193200 Theobroma cacao HOM05D004544 ORTHO05D005504 4.3e-179 631.7 454 70.5
CiPaw.13G000600 Carya illinoinensis HOM05D004544 ORTHO05D005504 1.3e-178 630.2 454 70.3
Cfa010700 Carpinus fangiana HOM05D004544 ORTHO05D005504 6.2e-178 627.9 454 70.3
RcHm_v2.0_Chr1g0313141 Rosa chinensis HOM05D004544 ORTHO05D005504 1.1e-177 627.1 450 69.8
Gohir.D08G037000 Gossypium hirsutum HOM05D004544 ORTHO05D005504 2.4e-177 625.9 453 69.5
FAN01G0284 Fragaria x ananassa HOM05D004544 ORTHO05D005504 1.5e-176 623.2 452 69.9
Gorai.004G035000 Gossypium raimondii HOM05D004544 ORTHO05D005504 2.0e-176 622.9 453 69.3
Dinv43503 Davidia involucrata HOM05D004544 ORTHO05D005504 2.6e-176 622.5 445 70.8
MD02G1320400 Malus domestica HOM05D004544 ORTHO05D005504 2.6e-176 622.5 433 71.8
FvH4_c5g00010 Fragaria vesca HOM05D004544 ORTHO05D005504 4.5e-176 621.7 452 69.7
Duzib068G1099 Durio zibethinus HOM05D004544 ORTHO05D005504 7.6e-176 620.9 454 70.3
Eucgr.E04336 Eucalyptus grandis HOM05D004544 ORTHO05D005504 8.4e-175 617.5 436 69.5
Thhalv10005961m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 5.4e-174 614.8 448 69.2
A04p01890 Brassica napus HOM05D004544 ORTHO05D005504 7.1e-174 614.4 449 68.8
GSVIVG01001349001 Vitis vinifera HOM05D004544 ORTHO05D005504 7.1e-174 614.4 454 68.3
Rhsim07G0049300 Rhododendron simsii HOM05D004544 ORTHO05D005504 1.2e-173 613.6 449 68.6
BraA04t15912Z Brassica rapa HOM05D004544 ORTHO05D005504 1.6e-173 613.2 449 69.0
Potri.009G024600 Populus trichocarpa HOM05D004544 ORTHO05D005504 1.6e-173 613.2 449 67.9
C04p32650 Brassica napus HOM05D004544 ORTHO05D005504 2.1e-173 612.8 449 68.8
Potri.001G232100 Populus trichocarpa HOM05D004544 ORTHO05D005504 2.1e-173 612.8 448 68.3
BcaC02g10108 Brassica carinata HOM05D004544 ORTHO05D005504 6.0e-173 611.3 449 68.6
Sp5g03140 Schrenkiella parvula HOM05D004544 ORTHO05D005504 1.3e-172 610.1 448 68.8
PGR031G1320 Punica granatum HOM05D004544 ORTHO05D005504 2.3e-172 609.4 450 70.2
Carub.0005s2680 Capsella rubella HOM05D004544 ORTHO05D005504 3.0e-172 609.0 447 68.0
vmacro22467 Vaccinium macrocarpon HOM05D004544 ORTHO05D005504 1.5e-171 606.7 465 65.4
BolC4t24833H Brassica oleracea HOM05D004544 ORTHO05D005504 1.9e-171 606.3 450 68.4
TAR633G2617 Trochodendron aralioides HOM05D004544 ORTHO05D005504 1.9e-171 606.3 444 70.0
BcaB02g08195 Brassica carinata HOM05D004544 ORTHO05D005504 3.3e-171 605.5 449 68.2
Aa31LG10G14230 Aethionema arabicum HOM05D004544 ORTHO05D005504 4.3e-171 605.1 433 70.7
AT3G60070 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 7.4e-171 604.4 448 68.1
THA.LOC104817137 Tarenaya hassleriana HOM05D004544 ORTHO05D005504 1.3e-170 603.6 445 69.2
Oeu060709.1 Olea europaea HOM05D004544 ORTHO05D005504 2.8e-170 602.4 453 67.1
Nn2g15791 Nelumbo nucifera HOM05D004544 ORTHO05D005504 3.7e-170 602.1 450 68.0
CARHR139460 Cardamine hirsuta HOM05D004544 ORTHO05D005504 4.8e-170 601.7 435 69.7
Nn7g35919 Nelumbo nucifera HOM05D004544 ORTHO05D005504 4.8e-170 601.7 451 67.6
CSS0044763 Camellia sinensis var. sinensis HOM05D004544 ORTHO05D005504 8.1e-170 600.9 440 68.6
Manes.10G153000 Manihot esculenta HOM05D004544 ORTHO05D005504 8.1e-170 600.9 399 74.4
Sp4g26350 Schrenkiella parvula HOM05D004544 ORTHO05D005504 8.1e-170 600.9 435 70.1
Aqoxy1G00422 Aquilegia oxysepala HOM05D004544 ORTHO05D005504 6.9e-169 597.8 449 66.4
AL5G42260 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 6.9e-169 597.8 449 67.3
A05p04480 Brassica napus HOM05D004544 ORTHO05D005504 6.9e-169 597.8 436 69.0
BolC4t28598H Brassica oleracea HOM05D004544 ORTHO05D005504 1.5e-168 596.7 435 69.2
BraA05t19424Z Brassica rapa HOM05D004544 ORTHO05D005504 1.5e-168 596.7 436 69.3
MBI01_g14445_MAGBIO Magnolia biondii HOM05D004544 ORTHO05D005504 1.5e-168 596.7 455 66.4
Actinidia05839 Actinidia chinensis HOM05D004544 ORTHO05D005504 2.0e-168 596.3 456 66.7
AT2G44280 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 2.6e-168 595.9 435 68.5
BcaNung06603 Brassica carinata HOM05D004544 ORTHO05D005504 2.6e-168 595.9 436 69.3
BolC4t22159H Brassica oleracea HOM05D004544 ORTHO05D005504 2.6e-168 595.9 436 69.3
BcaB02g08807 Brassica carinata HOM05D004544 ORTHO05D005504 3.4e-168 595.5 436 68.8
CsaV3_7G031530 Cucumis sativus L. HOM05D004544 ORTHO05D005504 3.4e-168 595.5 456 66.4
CAN.G1361.5 Capsicum annuum HOM05D004544 ORTHO05D005504 4.5e-168 595.1 452 66.2
Carub.0004s2687 Capsella rubella HOM05D004544 ORTHO05D005504 7.6e-168 594.3 429 69.2
Cpa.g.c29747 Carica papaya HOM05D004544 ORTHO05D005504 1.3e-167 593.6 389 75.6
AL4G43240 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 1.7e-167 593.2 435 68.5
Sopen01g033220 Solanum pennellii HOM05D004544 ORTHO05D005504 2.2e-167 592.8 441 66.7
Solyc01g073660.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 2.9e-167 592.4 441 66.4
C04p05190 Brassica napus HOM05D004544 ORTHO05D005504 8.4e-167 590.9 436 68.8
TWI09G1596 Tripterygium wilfordii HOM05D004544 ORTHO05D005504 1.1e-166 590.5 446 67.0
A04p33250 Brassica napus HOM05D004544 ORTHO05D005504 1.4e-166 590.1 435 68.0
BraA04t18786Z Brassica rapa HOM05D004544 ORTHO05D005504 1.4e-166 590.1 435 68.0
AUR62035404 Chenopodium quinoa HOM05D004544 ORTHO05D005504 1.4e-166 590.1 454 65.4
Cc02_g26820 Coffea canephora HOM05D004544 ORTHO05D005504 1.4e-166 590.1 460 65.7
Thhalv10001436m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 1.4e-166 590.1 451 67.2
DCAR_024995 Daucus carota HOM05D004544 ORTHO05D005504 3.2e-166 589.0 454 67.4
Hma1.2p1_0128F.1_g059850 Hydrangea macrophylla HOM05D004544 ORTHO05D005504 5.5e-166 588.2 416 70.7
C04p70950 Brassica napus HOM05D004544 ORTHO05D005504 2.1e-165 586.3 462 65.2
EL10Ac1g02232 Beta vulgaris HOM05D004544 ORTHO05D005504 2.7e-165 585.9 456 64.7
EL10Ac1g02233 Beta vulgaris HOM05D004544 ORTHO05D005504 2.7e-165 585.9 456 64.7
PSO063G0048 Papaver somniferum HOM05D004544 ORTHO05D005504 4.6e-165 585.1 453 67.5
PSO170G0355 Papaver somniferum HOM05D004544 ORTHO05D005504 1.3e-164 583.6 453 66.9
Sed0009480 Sechium edule HOM05D004544 ORTHO05D005504 6.7e-164 581.3 459 65.8
SGA_v2.0_scaffold260G45890 Striga asiatica HOM05D004544 ORTHO05D005504 1.9e-163 579.7 474 63.1
ECA236G1315 Erigeron canadensis HOM05D004544 ORTHO05D005504 2.5e-163 579.3 446 65.2
Aa31LG1G25900 Aethionema arabicum HOM05D004544 ORTHO05D005504 3.3e-163 578.9 450 66.4
HanXRQChr04g0117441 Helianthus annuus HOM05D004544 ORTHO05D005504 5.6e-163 578.2 441 64.6
Nn2g15790 Nelumbo nucifera HOM05D004544 ORTHO05D005504 2.8e-162 575.9 444 66.4
Sc03g0003850 Simmondsia chinensis HOM05D004544 ORTHO05D005504 1.1e-161 573.9 459 65.4
Gohir.A08G026600 Gossypium hirsutum HOM05D004544 ORTHO05D005504 2.4e-161 572.8 443 65.2
ClCG09G003650 Citrullus lanatus HOM05D004544 ORTHO05D005504 3.1e-161 572.4 500 60.8
Peaxi162Scf00402g00941 Petunia axillaris HOM05D004544 ORTHO05D005504 3.1e-161 572.4 451 65.0
BcaB06g29367 Brassica carinata HOM05D004544 ORTHO05D005504 1.5e-160 570.1 456 65.6
SalBow5G3691 Salvia bowleyana HOM05D004544 ORTHO05D005504 2.5e-158 562.8 466 62.4
PGSC0003DMG400031131 Solanum tuberosum HOM05D004544 ORTHO05D005504 3.2e-158 562.4 441 64.2
CDE04G3336 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 1.6e-157 560.1 428 67.1
HPP92_012523 Vanilla planifolia HOM05D004544 ORTHO05D005504 1.6e-157 560.1 441 64.6
TAR633G0112 Trochodendron aralioides HOM05D004544 ORTHO05D005504 4.6e-157 558.5 418 69.4
unitig_749.g13487 Utricularia gibba HOM05D004544 ORTHO05D005504 1.1e-155 553.9 458 60.9
Lsat_1_v5_gn_7_33840 Lactuca sativa HOM05D004544 ORTHO05D005504 4.8e-154 548.5 387 69.3
AUR62041888 Chenopodium quinoa HOM05D004544 ORTHO05D005504 1.5e-152 543.5 551 53.2
Os07g0578200 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 1.1e-150 537.3 441 63.7
Haze_03276 Corylus avellana HOM05D004544 ORTHO05D005504 7.9e-149 531.2 407 67.3
Zm00001eb325500 Zea mays HOM05D004544 ORTHO05D005504 8.8e-148 527.7 470 60.4
Os03g0168000 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 2.2e-146 523.1 445 59.1
CDE05G1716 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 1.3e-143 513.8 480 57.9
Zm00001eb402450 Zea mays HOM05D004544 ORTHO05D005504 6.5e-143 511.5 454 57.5
ATR0001G054 Amborella trichopoda HOM05D004544 ORTHO05D005504 8.5e-143 511.1 395 64.8
Nitab4.5_0000468g0180 Nicotiana tabacum HOM05D004544 ORTHO05D005504 3.3e-139 499.2 405 62.2
Peaxi162Scf00245g00710 Petunia axillaris HOM05D004544 ORTHO05D005504 5.5e-134 481.9 445 57.1
CAN.G928.1 Capsicum annuum HOM05D004544 ORTHO05D005504 4.7e-133 478.8 445 55.7
Nitab4.5_0004502g0040 Nicotiana tabacum HOM05D004544 ORTHO05D005504 1.8e-132 476.9 396 60.6
Sopen10g026790 Solanum pennellii HOM05D004544 ORTHO05D005504 3.3e-131 472.6 444 53.8
FAN01G3148 Fragaria x ananassa HOM05D004544 ORTHO05D005504 1.0e-127 461.1 350 67.4
Mapoly0020s0019 Marchantia polymorpha HOM05D004544 ORTHO05D005504 1.7e-127 460.3 448 54.7
Pp3c17_11410 Physcomitrium patens HOM05D004544 ORTHO05D005504 2.5e-126 456.4 455 53.0
AagrBONN_evm.TU.Sc2ySwM_368.1671 Anthoceros agrestis HOM05D004544 ORTHO05D005504 5.7e-123 445.3 426 53.1
Atru.chr11.2714 Acer truncatum HOM05D004544 ORTHO05D005504 9.7e-123 444.5 450 55.8
SMO353G0186 Selaginella moellendorffii HOM05D004544 ORTHO05D005504 9.7e-123 444.5 389 59.4
QL04p001964 Quercus lobata HOM05D004544 ORTHO05D005504 5.3e-121 438.7 283 74.9
CAN.G1361.4 Capsicum annuum HOM05D004544 ORTHO05D005504 8.0e-117 424.9 456 50.2
FAN01G0042 Fragaria x ananassa HOM05D004544 ORTHO05D005504 2.3e-116 423.3 438 56.2
Sopen01g033230 Solanum pennellii HOM05D004544 ORTHO05D005504 8.3e-114 414.8 445 49.4
Solyc01g073670.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 1.8e-113 413.7 445 49.2
Peaxi162Scf00402g00940 Petunia axillaris HOM05D004544 ORTHO05D005504 1.5e-110 404.1 450 47.6
Prupe.2G001700 Prunus persica HOM05D004544 ORTHO05D005504 3.3e-110 402.9 319 67.1
PGSC0003DMG400007701 Solanum tuberosum HOM05D004544 ORTHO05D005504 8.3e-98 361.7 444 44.8
CARHR170380 Cardamine hirsuta HOM05D004544 ORTHO05D005504 5.0e-95 352.4 290 62.1
SEGI_30614 Sequoiadendron giganteum HOM05D004544 ORTHO05D005504 1.5e-94 350.9 250 68.0
PGSC0003DMG400023279 Solanum tuberosum HOM05D004544 ORTHO05D005504 4.4e-91 339.3 387 48.3
FAN06G4582 Fragaria x ananassa HOM05D004544 ORTHO05D005504 5.8e-91 339.0 263 65.0
PGSC0003DMG400028978 Solanum tuberosum HOM05D004544 ORTHO05D005504 2.1e-77 293.9 445 40.7
Zm00001eb107640 Zea mays HOM05D004544 ORTHO05D005504 1.2e-69 268.1 193 67.9
Sabra09G0016300 Salix brachista HOM05D004544 ORTHO05D005504 2.7e-64 250.4 310 49.0
MELO3C023501.2 Cucumis melo HOM05D004544 ORTHO05D005504 4.5e-59 233.0 456 35.5
Psat2g024040 Pisum sativum HOM05D004544 ORTHO05D005504 3.5e-56 223.4 125 85.6
Migut.B01408 Erythranthe guttata HOM05D004544 ORTHO05D005504 1.1e-54 218.4 158 67.1
Migut.B01407 Erythranthe guttata HOM05D004544 ORTHO05D005504 5.3e-52 209.5 128 76.6
QL04p001975 Quercus lobata HOM05D004544 ORTHO05D005504 6.0e-48 196.1 173 60.7
Actinidia31716 Actinidia chinensis HOM05D004544 ORTHO05D005504 2.1e-45 187.6 158 58.9
SEGI_18579 Sequoiadendron giganteum HOM05D004544 ORTHO05D005504 1.0e-42 178.7 194 51.5
MELO3C000237.2 Cucumis melo HOM05D004544 ORTHO05D005504 4.2e-41 173.3 121 71.9
Migut.B01409 Erythranthe guttata HOM05D004544 ORTHO05D005504 5.1e-31 139.8 132 57.6
Solyc01g089990.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 7.4e-30 136.0 94 69.1
Actinidia31717 Actinidia chinensis HOM05D004544 ORTHO05D005504 3.8e-26 123.6 118 59.3
Lj7A562T25 Lonicera japonica HOM05D004544 ORTHO05D005504 1.1e-22 112.1 118 53.4
Hund18992 Selenicereus undatus HOM05D004544 ORTHO05D005504 1.4e-20 105.1 72 66.7
Os06g0628032 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 1.4e-17 95.1 99 47.5
Glyma.20G091501 Glycine max HOM05D004544 ORTHO05D005504 8.0e-16 89.4 58 74.1
QL04p001512 Quercus lobata HOM05D004544 ORTHO05D001929 2.0e-14 84.7 82 56.1
CAN.G913.7 Capsicum annuum HOM05D004544 ORTHO05D005504 3.3e-14 84.0 63 60.3
QL04p001505 Quercus lobata HOM05D004544 ORTHO05D005504 2.2e-13 81.3 44 84.1
Haze_14723 Corylus avellana HOM05D004544 ORTHO05D005504 4.5e-11 73.6 107 41.1
Nitab4.5_0006570g0020 Nicotiana tabacum HOM05D004544 ORTHO05D005504 1.2e-08 65.5 48 64.6


User provided reference genes

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