Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G16148 Trifolium pratense HOM05D006202 ORTHO05D008227 3.7e-235 817.8 400 100.0
Medtr2g061710 Medicago truncatula HOM05D006202 ORTHO05D008227 9.2e-218 760.0 403 93.5
Lj3g0005275 Lotus japonicus HOM05D006202 ORTHO05D008227 8.7e-208 726.9 400 88.8
Glyma.08G157800 Glycine max HOM05D006202 ORTHO05D008227 5.1e-200 701.0 401 84.8
Glyma.15G268400 Glycine max HOM05D006202 ORTHO05D008227 1.5e-196 689.5 401 83.3
Lalb_Chr01g0015151 Lupinus albus HOM05D006202 ORTHO05D008227 1.7e-195 686.0 400 83.0
Ca_03201_v3 Cicer arietinum L. HOM05D006202 ORTHO05D008227 2.9e-195 685.3 376 90.4
VMungo1080G0924 Vigna mungo HOM05D006202 ORTHO05D008227 6.2e-190 667.5 402 82.1
arahy.Tifrunner.gnm1.ann1.03K86Q Arachis hypogaea HOM05D006202 ORTHO05D008227 2.3e-184 649.0 378 83.3
arahy.Tifrunner.gnm1.ann1.Y9YBLC Arachis hypogaea HOM05D006202 ORTHO05D008227 2.8e-182 642.1 378 83.1
Phvul.005G042000 Phaseolus vulgaris HOM05D006202 ORTHO05D008227 6.2e-182 641.0 381 82.2
QL04p001552 Quercus lobata HOM05D006202 ORTHO05D008227 2.4e-181 639.0 399 77.7
arahy.Tifrunner.gnm1.ann1.YK6119 Arachis hypogaea HOM05D006202 ORTHO05D008227 1.5e-180 636.3 378 82.0
Prupe.1G561800 Prunus persica HOM05D006202 ORTHO05D008227 4.5e-180 634.8 400 77.5
CSS0029964 Camellia sinensis var. sinensis HOM05D006202 ORTHO05D008227 1.2e-177 626.7 407 76.7
Potri.009G024100 Populus trichocarpa HOM05D006202 ORTHO05D008227 1.6e-177 626.3 400 77.2
Actinidia21584 Actinidia chinensis HOM05D006202 ORTHO05D008227 7.9e-177 624.0 400 76.8
Haze_03268 Corylus avellana HOM05D006202 ORTHO05D008227 2.3e-176 622.5 404 76.7
Atru.chr11.2704 Acer truncatum HOM05D006202 ORTHO05D008227 6.7e-176 620.9 400 77.2
TWI73G0821 Tripterygium wilfordii HOM05D006202 ORTHO05D008227 6.7e-176 620.9 378 79.1
RcHm_v2.0_Chr1g0313251 Rosa chinensis HOM05D006202 ORTHO05D008227 1.9e-175 619.4 401 76.8
Dinv43939 Davidia involucrata HOM05D006202 ORTHO05D008227 3.3e-175 618.6 400 76.8
TAR369G0651 Trochodendron aralioides HOM05D006202 ORTHO05D008227 4.3e-175 618.2 407 75.4
Aa31LG5G5070 Aethionema arabicum HOM05D006202 ORTHO05D008227 6.3e-174 614.4 400 75.8
Manes.10G152100 Manihot esculenta HOM05D006202 ORTHO05D008227 8.2e-174 614.0 404 76.2
MD02G1319400 Malus domestica HOM05D006202 ORTHO05D008227 2.4e-173 612.5 343 85.4
Rhsim03G0068600 Rhododendron simsii HOM05D006202 ORTHO05D008227 3.1e-173 612.1 394 76.4
Sed0014986 Sechium edule HOM05D006202 ORTHO05D008227 3.1e-173 612.1 383 80.2
Cfa010710 Carpinus fangiana HOM05D006202 ORTHO05D008227 5.3e-173 611.3 378 78.8
Lj9C620G10 Lonicera japonica HOM05D006202 ORTHO05D008227 5.3e-173 611.3 345 84.6
THA.LOC104815880 Tarenaya hassleriana HOM05D006202 ORTHO05D008227 6.9e-173 610.9 401 76.1
vmacro21164 Vaccinium macrocarpon HOM05D006202 ORTHO05D008227 6.9e-173 610.9 345 84.1
Phvul.005G041900 Phaseolus vulgaris HOM05D006202 ORTHO05D008227 4.5e-172 608.2 327 89.0
ClCG09G003710 Citrullus lanatus HOM05D006202 ORTHO05D008227 5.9e-172 607.8 382 78.5
AT2G31955 Arabidopsis thaliana HOM05D006202 ORTHO05D008227 2.2e-171 605.9 400 74.0
AL4G27290 Arabidopsis lyrata HOM05D006202 ORTHO05D008227 3.8e-171 605.1 400 74.2
Cpa.g.sc189.4 Carica papaya HOM05D006202 ORTHO05D008227 3.8e-171 605.1 379 78.6
Carub.0004s1327 Capsella rubella HOM05D006202 ORTHO05D008227 8.5e-171 604.0 400 74.2
GSVIVG01001357001 Vitis vinifera HOM05D006202 ORTHO05D008227 1.4e-170 603.2 427 72.1
CiPaw.02G012300 Carya illinoinensis HOM05D006202 ORTHO05D008227 1.9e-170 602.8 380 77.1
Aqoxy1G00030 Aquilegia oxysepala HOM05D006202 ORTHO05D008227 7.2e-170 600.9 348 81.9
Ciclev10031726m.g Citrus clementina HOM05D006202 ORTHO05D008227 1.6e-169 599.7 409 74.3
Cc02_g26930 Coffea canephora HOM05D006202 ORTHO05D008227 3.6e-169 598.6 345 83.5
Nn2g15679 Nelumbo nucifera HOM05D006202 ORTHO05D008227 4.6e-169 598.2 406 72.4
FAN04G1730 Fragaria x ananassa HOM05D006202 ORTHO05D008227 6.1e-169 597.8 368 80.2
FvH4_5g30330 Fragaria vesca HOM05D006202 ORTHO05D008227 1.8e-168 596.3 368 80.4
Nitab4.5_0010722g0010 Nicotiana tabacum HOM05D006202 ORTHO05D008227 1.8e-168 596.3 371 78.2
Peaxi162Scf00402g00616 Petunia axillaris HOM05D006202 ORTHO05D008227 2.3e-168 595.9 369 77.8
BcaC01g05926 Brassica carinata HOM05D006202 ORTHO05D008227 3.9e-168 595.1 371 77.1
FAN13G0191 Fragaria x ananassa HOM05D006202 ORTHO05D008227 5.1e-168 594.7 368 80.2
Nitab4.5_0000468g0040 Nicotiana tabacum HOM05D006202 ORTHO05D008227 5.1e-168 594.7 382 75.7
Sp4g14320 Schrenkiella parvula HOM05D006202 ORTHO05D008227 5.1e-168 594.7 400 74.0
ECA234G4350 Erigeron canadensis HOM05D006202 ORTHO05D008227 1.5e-167 593.2 345 81.2
Duzib168G0949 Durio zibethinus HOM05D006202 ORTHO05D008227 2.5e-167 592.4 354 82.2
Thhalv10016791m.g Eutrema salsugineum HOM05D006202 ORTHO05D008227 2.5e-167 592.4 375 77.6
SGA_v2.0_scaffold5G03106 Striga asiatica HOM05D006202 ORTHO05D008227 2.5e-167 592.4 345 81.2
Gorai.004G013400 Gossypium raimondii HOM05D006202 ORTHO05D008227 4.3e-167 591.7 332 84.6
BolC3t14483H Brassica oleracea HOM05D006202 ORTHO05D008227 5.7e-167 591.3 372 77.2
BraA03t11059Z Brassica rapa HOM05D006202 ORTHO05D008227 5.7e-167 591.3 400 73.8
Oeu060701.1 Olea europaea HOM05D006202 ORTHO05D008227 7.4e-167 590.9 367 78.5
Sc10g0005310 Simmondsia chinensis HOM05D006202 ORTHO05D008227 7.4e-167 590.9 348 81.6
FAN18G2168 Fragaria x ananassa HOM05D006202 ORTHO05D008227 9.7e-167 590.5 345 82.9
FAN08G1924 Fragaria x ananassa HOM05D006202 ORTHO05D008227 1.3e-166 590.1 368 79.3
COL.COLO4_07529 Corchorus olitorius HOM05D006202 ORTHO05D008227 1.7e-166 589.7 404 73.8
MBI04_g33961_MAGBIO Magnolia biondii HOM05D006202 ORTHO05D008227 2.2e-166 589.3 356 79.5
PGSC0003DMG401028974 Solanum tuberosum HOM05D006202 ORTHO05D008227 2.8e-166 589.0 345 80.9
Ah.14g085700 Amaranthus hybridus HOM05D006202 ORTHO05D008227 3.7e-166 588.6 407 72.0
Migut.B01400 Erythranthe guttata HOM05D006202 ORTHO05D008227 3.7e-166 588.6 365 78.6
Sopen01g033340 Solanum pennellii HOM05D006202 ORTHO05D008227 3.7e-166 588.6 345 80.6
Gohir.D08G018900 Gossypium hirsutum HOM05D006202 ORTHO05D008227 4.8e-166 588.2 332 84.0
Sabra09G0015400 Salix brachista HOM05D006202 ORTHO05D008227 8.2e-166 587.4 460 66.7
Thecc.09G200100 Theobroma cacao HOM05D006202 ORTHO05D008227 8.2e-166 587.4 338 82.5
Solyc01g073730.4 Solanum lycopersicum HOM05D006202 ORTHO05D008227 1.8e-165 586.3 345 80.6
Gohir.A08G008900 Gossypium hirsutum HOM05D006202 ORTHO05D008227 3.1e-165 585.5 332 83.1
HanXRQChr16g0520351 Helianthus annuus HOM05D006202 ORTHO05D008227 5.3e-165 584.7 378 74.6
Lsat_1_v5_gn_4_46560 Lactuca sativa HOM05D006202 ORTHO05D008227 5.3e-165 584.7 341 80.9
Migut.I00539 Erythranthe guttata HOM05D006202 ORTHO05D008227 9.1e-165 583.9 376 76.6
MSTRG.28100 Avicennia marina HOM05D006202 ORTHO05D008227 1.2e-164 583.6 348 79.6
PSO384G0467 Papaver somniferum HOM05D006202 ORTHO05D008227 5.9e-164 581.3 347 79.8
CAN.G129.48 Capsicum annuum HOM05D006202 ORTHO05D008227 1.0e-163 580.5 377 74.5
CsaV3_7G031490 Cucumis sativus L. HOM05D006202 ORTHO05D008227 1.0e-163 580.5 319 86.8
PSO339G0702 Papaver somniferum HOM05D006202 ORTHO05D008227 2.2e-163 579.3 347 79.5
SalBow5G5675 Salvia bowleyana HOM05D006202 ORTHO05D008227 2.9e-163 578.9 355 78.0
Zm00001eb244230 Zea mays HOM05D006202 ORTHO05D008227 3.8e-163 578.6 366 75.7
Eucgr.A00275 Eucalyptus grandis HOM05D006202 ORTHO05D008227 1.9e-162 576.2 345 80.3
Eucgr.A00079 Eucalyptus grandis HOM05D006202 ORTHO05D008227 3.2e-162 575.5 353 79.3
AUR62036652 Chenopodium quinoa HOM05D006202 ORTHO05D008227 7.2e-162 574.3 380 73.4
ATR0605G327 Amborella trichopoda HOM05D006202 ORTHO05D008227 2.7e-161 572.4 367 75.7
AUR62034625 Chenopodium quinoa HOM05D006202 ORTHO05D008227 7.9e-161 570.9 362 75.7
CANSAT80G0703 Cannabis sativa HOM05D006202 ORTHO05D008227 3.9e-160 568.5 407 70.8
unitig_749.g13486 Utricularia gibba HOM05D006202 ORTHO05D008227 6.7e-160 567.8 358 74.9
Os12g0507000 Oryza sativa ssp. japonica HOM05D006202 ORTHO05D008227 8.8e-160 567.4 373 72.7
EL10Ac3g06182 Beta vulgaris HOM05D006202 ORTHO05D008227 2.6e-159 565.8 400 69.0
DCAR_001807 Daucus carota HOM05D006202 ORTHO05D008227 3.3e-159 565.5 345 77.7
Os02g0258900 Oryza sativa ssp. japonica HOM05D006202 ORTHO05D008227 9.1e-157 557.4 374 71.1
HPP92_023784 Vanilla planifolia HOM05D006202 ORTHO05D008227 3.8e-155 552.0 345 75.9
C03p21020 Brassica napus HOM05D000200 ORTHO05D000262 9.4e-154 547.4 364 74.2
A03p17940 Brassica napus HOM05D000200 ORTHO05D000262 1.8e-152 543.1 393 70.7
SMO361G0213 Selaginella moellendorffii HOM05D006202 ORTHO05D008227 1.0e-144 517.3 363 68.6
arahy.Tifrunner.gnm1.ann1.JS3HL2 Arachis hypogaea HOM05D006202 ORTHO05D008227 3.0e-144 515.8 378 70.4
Mapoly0045s0149 Marchantia polymorpha HOM05D006202 ORTHO05D008227 2.8e-142 509.2 360 68.9
Pp3c5_22480 Physcomitrium patens HOM05D006202 ORTHO05D008227 1.8e-141 506.5 330 71.2
Actinidia15848 Actinidia chinensis HOM05D006202 ORTHO05D008227 9.1e-141 504.2 395 66.8
CDE06G1615 Ceratophyllum demersum HOM05D006202 ORTHO05D008227 1.7e-139 500.0 361 70.4
Psat1g128920 Pisum sativum HOM05D006202 ORTHO05D008227 1.9e-138 496.5 289 86.5
SEGI_40145 Sequoiadendron giganteum HOM05D006202 ORTHO05D008227 2.1e-137 493.0 357 68.3
CBR_g36677 Chara braunii HOM05D006202 ORTHO05D008227 4.7e-137 491.9 357 66.7
Potri.001G230604 Populus trichocarpa HOM05D006202 ORTHO05D008227 3.1e-133 479.2 399 62.9
AL80U10060 Arabidopsis lyrata HOM05D006202 ORTHO05D008227 2.9e-126 456.1 400 60.2
MCO15G349 Micromonas commoda HOM05D006202 ORTHO05D008227 4.0e-120 435.6 329 62.0
TAR369G1105 Trochodendron aralioides HOM05D006202 ORTHO05D008227 1.6e-116 423.7 294 72.1
Cre13.g602901 Chlamydomonas reinhardtii HOM05D006202 ORTHO05D008227 3.0e-115 419.5 391 55.2
MELO3C023505.2 Cucumis melo HOM05D006202 ORTHO05D008227 1.5e-114 417.2 269 77.0
CARHR125690 Cardamine hirsuta HOM05D006202 ORTHO05D008227 4.1e-109 399.1 287 68.3
PRCOL_00002201 Prasinoderma coloniale HOM05D006202 ORTHO05D008227 1.3e-107 394.0 338 55.6
Hund12940 Selenicereus undatus HOM05D006202 ORTHO05D008227 1.3e-107 394.0 230 81.3
Pp3c6_6420 Physcomitrium patens HOM05D006202 ORTHO05D008227 5.8e-103 378.6 327 57.8
Cfa022704 Carpinus fangiana HOM05D006202 ORTHO05D008227 1.3e-99 367.5 369 50.9
Haze_27006 Corylus avellana HOM05D006202 ORTHO05D008699 1.1e-69 268.1 287 46.0
SHI12244 Sapria himalayana HOM05D006202 ORTHO05D008227 1.9e-66 257.3 192 67.7
SHI12251 Sapria himalayana HOM05D006202 ORTHO05D008227 1.1e-64 251.5 210 61.9
AagrBONN_evm.TU.Sc2ySwM_344.4902 Anthoceros agrestis HOM05D006202 ORTHO05D008227 1.8e-59 234.2 164 68.3
SHI12245 Sapria himalayana HOM05D006202 ORTHO05D008227 7.7e-47 192.2 172 58.7
ATR0605G108 Amborella trichopoda HOM05D006202 ORTHO05D008227 1.1e-45 188.3 131 71.0
SHI34064 Sapria himalayana HOM05D006202 ORTHO05D367267 2.3e-14 84.3 68 64.7
A05p13580 Brassica napus HOM05D006202 ORTHO05D033532 8.6e-14 82.4 90 50.0
BraA05t20295Z Brassica rapa HOM05D006202 ORTHO05D033532 8.6e-14 82.4 90 50.0
TAR623G0116 Trochodendron aralioides HOM05D006202 ORTHO05D414173 7.5e-10 69.3 35 85.7


User provided reference genes

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