Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G16145 Trifolium pratense HOM05D004722 ORTHO05D005453 1.4e-35 152.5 82 100.0
Medtr2g061780 Medicago truncatula HOM05D004722 ORTHO05D005453 2.9e-33 144.8 82 95.1
Ca_03203_v3 Cicer arietinum L. HOM05D004722 ORTHO05D005453 2.3e-30 135.2 81 87.7
Psat1g129080 Pisum sativum HOM05D004722 ORTHO05D005453 1.1e-27 126.3 75 92.0
Lj3g0007026 Lotus japonicus HOM05D004722 ORTHO05D005453 1.8e-27 125.6 83 81.9
arahy.Tifrunner.gnm1.ann1.3B9L35 Arachis hypogaea HOM05D004722 ORTHO05D005453 3.1e-27 124.8 81 81.5
Phvul.005G042200 Phaseolus vulgaris HOM05D004722 ORTHO05D005453 3.4e-26 121.3 82 79.3
Glyma.15G268200 Glycine max HOM05D004722 ORTHO05D005453 6.4e-25 117.1 76 77.6
Lalb_Chr25g0283671 Lupinus albus HOM05D004722 ORTHO05D005453 9.3e-24 113.2 76 77.6
Glyma.08G158100 Glycine max HOM05D004722 ORTHO05D005453 2.1e-23 112.1 70 81.4
Lalb_Chr01g0014951 Lupinus albus HOM05D004722 ORTHO05D005453 1.3e-20 102.8 76 71.1
MD02G1319500 Malus domestica HOM05D004722 ORTHO05D005453 4.8e-20 100.9 78 74.4
Manes.10G152300 Manihot esculenta HOM05D004722 ORTHO05D005453 2.4e-19 98.6 70 78.6
MD00G1055400 Malus domestica HOM05D004722 ORTHO05D005453 5.3e-19 97.4 72 76.4
Prupe.2G002500 Prunus persica HOM05D004722 ORTHO05D005453 9.0e-19 96.7 84 66.7
PGR102G1407 Punica granatum HOM05D004722 ORTHO05D005453 4.5e-18 94.4 78 69.2
RhsimUnG0154700 Rhododendron simsii HOM05D004722 ORTHO05D005453 1.0e-17 93.2 82 73.2
Rhsim13G0228000 Rhododendron simsii HOM05D004722 ORTHO05D005453 1.3e-17 92.8 82 73.2
Sed0000285 Sechium edule HOM05D004722 ORTHO05D005453 1.3e-17 92.8 73 71.2
TAR633G0462 Trochodendron aralioides HOM05D004722 ORTHO05D005453 2.2e-17 92.0 80 67.5
CSS0017159 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 3.8e-17 91.3 75 68.0
Potri.009G024300 Populus trichocarpa HOM05D004722 ORTHO05D005453 4.9e-17 90.9 80 70.0
TAR636G1609 Trochodendron aralioides HOM05D004722 ORTHO05D005453 4.9e-17 90.9 70 68.6
CSS0018564 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 6.5e-17 90.5 75 68.0
CSS0019299 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 8.4e-17 90.1 75 68.0
TAR636G0988 Trochodendron aralioides HOM05D004722 ORTHO05D005453 1.4e-16 89.4 70 67.1
COL.COLO4_35454 Corchorus olitorius HOM05D004722 ORTHO05D005453 3.2e-16 88.2 78 65.4
FAN01G1424 Fragaria x ananassa HOM05D000082 ORTHO05D005453 4.2e-16 87.8 82 64.6
Actinidia05843 Actinidia chinensis HOM05D004722 ORTHO05D005453 7.1e-16 87.0 70 70.0
RcHm_v2.0_Chr1g0313231 Rosa chinensis HOM05D004722 ORTHO05D005453 7.1e-16 87.0 82 64.6
Aa31LG1G19080 Aethionema arabicum HOM05D004722 ORTHO05D005453 9.3e-16 86.7 78 62.8
Atru.chr11.2706 Acer truncatum HOM05D004722 ORTHO05D005453 1.2e-15 86.3 77 63.6
Cfa010708 Carpinus fangiana HOM05D004722 ORTHO05D005453 1.6e-15 85.9 79 64.6
ClCG10G012700 Citrullus lanatus HOM05D004722 ORTHO05D005453 1.6e-15 85.9 82 64.6
Aqoxy2G00098 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 2.1e-15 85.5 75 62.7
Aqoxy3G01856 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 2.1e-15 85.5 75 62.7
DCAR_029591 Daucus carota HOM05D004722 ORTHO05D005453 2.1e-15 85.5 76 65.8
CiPaw.13G035000 Carya illinoinensis HOM05D004722 ORTHO05D005453 2.7e-15 85.1 77 66.2
MELO3C023928.2 Cucumis melo HOM05D004722 ORTHO05D005453 2.7e-15 85.1 72 66.7
Hma1.2p1_1373F.1_g278710 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 2.7e-15 85.1 69 73.9
Hma1.2p1_2663F.1_g326415 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 2.7e-15 85.1 69 73.9
Nn7g35982 Nelumbo nucifera HOM05D004722 ORTHO05D005453 4.6e-15 84.3 82 64.6
Duzib114G0602 Durio zibethinus HOM05D004722 ORTHO05D005453 6.0e-15 84.0 76 61.8
Hma1.2p1_0541F.1_g174840 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 6.0e-15 84.0 70 71.4
Nn2g15722 Nelumbo nucifera HOM05D004722 ORTHO05D005453 6.0e-15 84.0 69 71.0
Ciclev10033110m.g Citrus clementina HOM05D004722 ORTHO05D005453 7.9e-15 83.6 77 66.2
Sabra09G0015700 Salix brachista HOM05D004722 ORTHO05D005453 7.9e-15 83.6 80 65.0
Sed0020970 Sechium edule HOM05D004722 ORTHO05D005453 7.9e-15 83.6 75 64.0
CANSAT11G0834 Cannabis sativa HOM05D004722 ORTHO05D005453 1.3e-14 82.8 77 61.0
Haze_03270 Corylus avellana HOM05D004722 ORTHO05D005453 1.3e-14 82.8 79 64.6
Cpa.g.sc189.2 Carica papaya HOM05D004722 ORTHO05D005453 1.8e-14 82.4 69 65.2
TWI60G0560 Tripterygium wilfordii HOM05D004722 ORTHO05D005453 1.8e-14 82.4 81 60.5
Eucgr.B02611 Eucalyptus grandis HOM05D004722 ORTHO05D005453 3.0e-14 81.6 75 66.7
Thecc.09G215900 Theobroma cacao HOM05D004722 ORTHO05D005453 3.0e-14 81.6 81 61.7
vmacro13608 Vaccinium macrocarpon HOM05D004722 ORTHO05D005453 3.0e-14 81.6 71 62.0
HanXRQChr11g0344951 Helianthus annuus HOM05D004722 ORTHO05D005453 3.9e-14 81.3 72 62.5
Rhsim07G0049700 Rhododendron simsii HOM05D004722 ORTHO05D005453 6.7e-14 80.5 70 62.9
Eucgr.B03635 Eucalyptus grandis HOM05D004722 ORTHO05D005453 8.7e-14 80.1 75 64.0
Carub.0004s1325 Capsella rubella HOM05D004722 ORTHO05D005453 1.5e-13 79.3 73 63.0
Ciclev10017204m.g Citrus clementina HOM05D004722 ORTHO05D005453 1.5e-13 79.3 75 62.7
Cc02_g26900 Coffea canephora HOM05D004722 ORTHO05D005453 1.5e-13 79.3 77 62.3
CSS0019909 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 1.9e-13 79.0 74 63.5
Potri.001G010600 Populus trichocarpa HOM05D004722 ORTHO05D005453 1.9e-13 79.0 82 58.5
SalBow4G0755 Salvia bowleyana HOM05D004722 ORTHO05D005453 1.9e-13 79.0 71 64.8
Cc02_g26920 Coffea canephora HOM05D004722 ORTHO05D005453 2.5e-13 78.6 73 61.6
Thecc.10G172000 Theobroma cacao HOM05D004722 ORTHO05D005453 2.5e-13 78.6 76 60.5
Potri.001G230900 Populus trichocarpa HOM05D004722 ORTHO05D005453 3.3e-13 78.2 85 60.0
Potri.003G215300 Populus trichocarpa HOM05D004722 ORTHO05D005453 3.3e-13 78.2 69 63.8
Gohir.A13G005400 Gossypium hirsutum HOM05D004722 ORTHO05D005453 4.3e-13 77.8 70 65.7
Lsat_1_v5_gn_1_68380 Lactuca sativa HOM05D004722 ORTHO05D005453 4.3e-13 77.8 72 61.1
Thhalv10017532m.g Eutrema salsugineum HOM05D004722 ORTHO05D005453 5.7e-13 77.4 86 54.7
GSVIVG01025254001 Vitis vinifera HOM05D004722 ORTHO05D005453 5.7e-13 77.4 68 61.8
AT1G05575 Arabidopsis thaliana HOM05D004722 ORTHO05D005453 7.4e-13 77.0 83 54.2
BcaC02g11308 Brassica carinata HOM05D004722 ORTHO05D005453 7.4e-13 77.0 78 57.7
A05p13590 Brassica napus HOM05D004722 ORTHO05D005453 7.4e-13 77.0 78 57.7
C04p17690 Brassica napus HOM05D004722 ORTHO05D005453 7.4e-13 77.0 78 57.7
BolC4t23317H Brassica oleracea HOM05D004722 ORTHO05D005453 7.4e-13 77.0 78 57.7
BraA05t20296Z Brassica rapa HOM05D004722 ORTHO05D005453 7.4e-13 77.0 78 57.7
CAN.G129.50 Capsicum annuum HOM05D004722 ORTHO05D005453 7.4e-13 77.0 65 67.7
Peaxi162Scf00245g00096 Petunia axillaris HOM05D004722 ORTHO05D005453 9.6e-13 76.6 65 67.7
CARHR005060 Cardamine hirsuta HOM05D004722 ORTHO05D005453 1.3e-12 76.3 90 53.3
Sabra16G0138300 Salix brachista HOM05D004722 ORTHO05D005453 1.6e-12 75.9 73 63.0
COL.COLO4_10444 Corchorus olitorius HOM05D004722 ORTHO05D005453 2.1e-12 75.5 72 61.1
ECA236G3701 Erigeron canadensis HOM05D004722 ORTHO05D005453 2.1e-12 75.5 77 58.4
HanXRQChr15g0480671 Helianthus annuus HOM05D004722 ORTHO05D005453 2.1e-12 75.5 77 58.4
PGSC0003DMG400028988 Solanum tuberosum HOM05D004722 ORTHO05D005453 2.1e-12 75.5 65 67.7
DCAR_027044 Daucus carota HOM05D004722 ORTHO05D005453 2.8e-12 75.1 69 63.8
DCAR_027045 Daucus carota HOM05D004722 ORTHO05D005453 2.8e-12 75.1 69 62.3
Gorai.013G005600 Gossypium raimondii HOM05D004722 ORTHO05D005453 2.8e-12 75.1 77 58.4
Oeu034890.1 Olea europaea HOM05D004722 ORTHO05D005453 2.8e-12 75.1 70 64.3
BraA10t42701Z Brassica rapa HOM05D000875 ORTHO05D000684 3.7e-12 74.7 75 61.3
PGSC0003DMG400028984 Solanum tuberosum HOM05D004722 ORTHO05D005453 3.7e-12 74.7 74 59.5
THA.LOC104800946 Tarenaya hassleriana HOM05D004722 ORTHO05D005453 3.7e-12 74.7 79 62.0
Sp4g14310 Schrenkiella parvula HOM05D004722 ORTHO05D005453 4.8e-12 74.3 73 58.9
Sc06g0004360 Simmondsia chinensis HOM05D004722 ORTHO05D005453 4.8e-12 74.3 74 58.1
AL4G27260 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 6.2e-12 73.9 73 57.5
AT2G31945 Arabidopsis thaliana HOM05D004722 ORTHO05D005453 6.2e-12 73.9 73 58.9
A10p04290 Brassica napus HOM05D004722 ORTHO05D005453 6.2e-12 73.9 90 53.3
BraA10t42697Z Brassica rapa HOM05D004722 ORTHO05D005453 6.2e-12 73.9 90 53.3
PGR119G0776 Punica granatum HOM05D004722 ORTHO05D005453 6.2e-12 73.9 66 66.7
Solyc01g073720.2 Solanum lycopersicum HOM05D004722 ORTHO05D005453 6.2e-12 73.9 64 67.2
Sopen01g033290 Solanum pennellii HOM05D004722 ORTHO05D005453 8.2e-12 73.6 64 65.6
PSO339G1234 Papaver somniferum HOM05D004722 ORTHO05D005453 1.1e-11 73.2 65 66.2
AL1G15450 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 1.4e-11 72.8 76 56.6
BolC5t29171H Brassica oleracea HOM05D004722 ORTHO05D005453 1.4e-11 72.8 83 54.2
Carub.0001s0489 Capsella rubella HOM05D004722 ORTHO05D005453 1.4e-11 72.8 83 53.0
Gohir.A05G401550 Gossypium hirsutum HOM05D004722 ORTHO05D005453 2.4e-11 72.0 69 62.3
Gohir.D04G014200 Gossypium hirsutum HOM05D004722 ORTHO05D005453 3.1e-11 71.6 75 60.0
Gorai.012G016800 Gossypium raimondii HOM05D004722 ORTHO05D005453 3.1e-11 71.6 75 60.0
Migut.N01655 Erythranthe guttata HOM05D004722 ORTHO05D005453 4.0e-11 71.2 62 66.1
Gohir.D13G005100 Gossypium hirsutum HOM05D004722 ORTHO05D005453 4.0e-11 71.2 64 64.1
Nitab4.5_0000468g0090 Nicotiana tabacum HOM05D004722 ORTHO05D005453 4.0e-11 71.2 65 63.1
BcaC05g24363 Brassica carinata HOM05D004722 ORTHO05D005453 5.3e-11 70.9 77 57.1
BcaB02g06840 Brassica carinata HOM05D004722 ORTHO05D005453 6.9e-11 70.5 87 54.0
CSS0030536 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 6.9e-11 70.5 70 62.9
SalBow4G0008 Salvia bowleyana HOM05D004722 ORTHO05D005453 6.9e-11 70.5 66 62.1
HanXRQChr01g0021201 Helianthus annuus HOM05D004722 ORTHO05D005453 9.0e-11 70.1 62 64.5
Sopen01g033320 Solanum pennellii HOM05D004722 ORTHO05D005453 1.2e-10 69.7 64 62.5
Ah.06g190970 Amaranthus hybridus HOM05D004722 ORTHO05D005453 4.5e-10 67.8 81 51.9
Peaxi162Scf00402g00810 Petunia axillaris HOM05D004722 ORTHO05D005453 4.5e-10 67.8 59 67.8
MD11G1015000 Malus domestica HOM05D004722 ORTHO05D005453 5.8e-10 67.4 72 56.9
FAN10G0002 Fragaria x ananassa HOM05D040482 ORTHO05D005453 7.6e-10 67.0 63 58.7
RcHm_v2.0_Chr5g0081201 Rosa chinensis HOM05D004722 ORTHO05D005453 7.6e-10 67.0 61 65.6
Zm00001eb100710 Zea mays HOM05D004722 ORTHO05D005453 7.6e-10 67.0 70 58.6
Zm00001eb193270 Zea mays HOM05D004722 ORTHO05D005453 7.6e-10 67.0 80 50.0
MD03G1011900 Malus domestica HOM05D004722 ORTHO05D005453 1.0e-09 66.6 59 64.4
Zm00001eb100700 Zea mays HOM05D004722 ORTHO05D005453 1.0e-09 66.6 70 58.6
Atru.chr3.2177 Acer truncatum HOM05D004722 ORTHO05D005453 1.3e-09 66.2 57 66.7
Oeu032785.1 Olea europaea HOM05D004722 ORTHO05D005453 1.3e-09 66.2 71 56.3
Prupe.6G012500 Prunus persica HOM05D004722 ORTHO05D005453 1.3e-09 66.2 66 59.1
Zm00001eb373570 Zea mays HOM05D004722 ORTHO05D005453 1.3e-09 66.2 82 53.7
ClCG09G003700 Citrullus lanatus HOM05D004722 ORTHO05D005453 1.7e-09 65.9 63 58.7
AL80U10030 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 2.2e-09 65.5 66 57.6
Atru.chr3.2176 Acer truncatum HOM05D004722 ORTHO05D005453 5.0e-09 64.3 57 66.7
Cpa.g.sc119.96 Carica papaya HOM05D004722 ORTHO05D005453 5.0e-09 64.3 61 62.3
Os02g0774200 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 6.5e-09 63.9 75 56.0
Sed0018607 Sechium edule HOM05D004722 ORTHO05D005453 6.5e-09 63.9 71 53.5
FvH4_3g44500 Fragaria vesca HOM05D004722 ORTHO05D005453 8.4e-09 63.5 61 62.3
FAN11G3093 Fragaria x ananassa HOM05D004722 ORTHO05D005453 8.4e-09 63.5 61 62.3
Nitab4.5_0009236g0010 Nicotiana tabacum HOM05D004722 ORTHO05D005453 1.1e-08 63.2 71 60.6
Gohir.A10G182200 Gossypium hirsutum HOM05D004722 ORTHO05D005453 1.9e-08 62.4 79 53.2
FvH4_7g00010 Fragaria vesca HOM05D040482 ORTHO05D005453 3.2e-08 61.6 50 70.0
EL10Ac4g09615 Beta vulgaris HOM05D004722 ORTHO05D005453 4.2e-08 61.2 81 49.4
Os06g0207200 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 5.5e-08 60.8 84 48.8
DCAR_023306 Daucus carota HOM05D004722 ORTHO05D005453 7.1e-08 60.5 73 53.4
Os09g0446700 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 1.2e-07 59.7 71 54.9
Gorai.011G212200 Gossypium raimondii HOM05D004722 ORTHO05D005453 2.7e-07 58.5 79 51.9
QL04p001566 Quercus lobata HOM05D004722 ORTHO05D005453 3.5e-07 58.2 48 68.8
ATR0598G063 Amborella trichopoda HOM05D004722 ORTHO05D005453 7.9e-07 57.0 69 52.2
EL10Ac4g09614 Beta vulgaris HOM05D004722 ORTHO05D005453 1.0e-06 56.6 76 46.1
EL10Ac4g09616 Beta vulgaris HOM05D004722 ORTHO05D005453 3.0e-06 55.1 70 50.0
MBI19_g17417_MAGBIO Magnolia biondii HOM05D004722 ORTHO05D005453 6.7e-06 53.9 66 45.5
MBI19_g17416_MAGBIO Magnolia biondii HOM05D004722 ORTHO05D005453 8.7e-06 53.5 66 50.0


User provided reference genes

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