Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G1606 Trifolium pratense HOM05D000786 ORTHO05D000779 2.6e-53 211.8 109 100.0
Medtr7g112020 Medicago truncatula HOM05D000786 ORTHO05D000779 1.4e-27 126.3 123 57.7
Lj1g0008547 Lotus japonicus HOM05D000786 ORTHO05D000779 2.8e-20 102.1 114 56.1
Glyma.19G229300 Glycine max HOM05D000786 ORTHO05D000779 5.9e-18 94.4 114 53.5
Lalb_Chr15g0077641 Lupinus albus HOM05D000786 ORTHO05D000779 1.5e-16 89.7 91 57.1
Lalb_Chr18g0046031 Lupinus albus HOM05D000786 ORTHO05D000779 1.9e-16 89.4 58 72.4
Glyma.03G232300 Glycine max HOM05D000786 ORTHO05D000779 3.3e-16 88.6 119 50.4
arahy.Tifrunner.gnm1.ann1.JFXL2D Arachis hypogaea HOM05D000786 ORTHO05D000779 3.0e-14 82.0 94 50.0
Haze_04084 Corylus avellana HOM05D000786 ORTHO05D000779 9.8e-13 77.0 109 42.2
Cfa006682 Carpinus fangiana HOM05D000786 ORTHO05D000779 1.3e-12 76.6 110 42.7
CiPaw.08G156800 Carya illinoinensis HOM05D000786 ORTHO05D000779 1.7e-12 76.3 109 46.8
VMungo1383G3574 Vigna mungo HOM05D059857 ORTHO05D000779 4.9e-12 74.7 115 45.2
THA.LOC104818741 Tarenaya hassleriana HOM05D000786 ORTHO05D000779 2.4e-11 72.4 92 46.7
CiPaw.07G027400 Carya illinoinensis HOM05D000786 ORTHO05D000779 3.2e-11 72.0 97 43.3
Prupe.6G315400 Prunus persica HOM05D000786 ORTHO05D000779 3.2e-11 72.0 112 43.8
ClCG03G017660 Citrullus lanatus HOM05D032089 ORTHO05D000779 9.2e-11 70.5 66 53.0
BcaC09g47844 Brassica carinata HOM05D000786 ORTHO05D000779 1.2e-10 70.1 63 55.6
BolC1t05676H Brassica oleracea HOM05D000786 ORTHO05D000779 1.2e-10 70.1 63 55.6
BraA01t04489Z Brassica rapa HOM05D000786 ORTHO05D000779 1.2e-10 70.1 63 55.6
CARHR080180 Cardamine hirsuta HOM05D000786 ORTHO05D000779 1.2e-10 70.1 61 55.7
MD04G1195600 Malus domestica HOM05D000786 ORTHO05D000779 1.6e-10 69.7 129 40.3
BcaC05g29785 Brassica carinata HOM05D000786 ORTHO05D000779 2.0e-10 69.3 61 54.1
Medtr1g083830 Medicago truncatula HOM05D013158 ORTHO05D000779 2.7e-10 68.9 91 48.4
Carub.0003s0508 Capsella rubella HOM05D000786 ORTHO05D000779 3.5e-10 68.6 53 60.4
AT3G05725 Arabidopsis thaliana HOM05D000786 ORTHO05D000779 4.6e-10 68.2 61 54.1
Thhalv10021773m.g Eutrema salsugineum HOM05D000786 ORTHO05D000779 4.6e-10 68.2 53 58.5
FAN09G3870 Fragaria x ananassa HOM05D013158 ORTHO05D000779 4.6e-10 68.2 48 64.6
C05p61500 Brassica napus HOM05D000786 ORTHO05D000779 7.8e-10 67.4 61 50.8
BraA05t22947Z Brassica rapa HOM05D000786 ORTHO05D000779 7.8e-10 67.4 61 50.8
RcHm_v2.0_Chr3g0456821 Rosa chinensis HOM05D013158 ORTHO05D000779 7.8e-10 67.4 48 64.6
MD12G1207900 Malus domestica HOM05D000786 ORTHO05D000779 1.0e-09 67.0 111 42.3
Sp3g04610 Schrenkiella parvula HOM05D000786 ORTHO05D000779 1.0e-09 67.0 60 53.3
PGR083G1617 Punica granatum HOM05D000786 ORTHO05D000779 1.3e-09 66.6 94 41.5
TPR.G2615 Trifolium pratense HOM05D005361 ORTHO05D006518 3.0e-09 65.5 92 46.7
Aa31LG5G16150 Aethionema arabicum HOM05D000786 ORTHO05D000779 3.9e-09 65.1 48 58.3
FAN14G2240 Fragaria x ananassa HOM05D013158 ORTHO05D000779 3.9e-09 65.1 43 67.4
Atru.chr2.141 Acer truncatum HOM05D000786 ORTHO05D000779 5.0e-09 64.7 60 48.3
TWI12G0435 Tripterygium wilfordii HOM05D000786 ORTHO05D000779 6.6e-09 64.3 102 42.2
MELO3C025388.2 Cucumis melo HOM05D000786 ORTHO05D000779 8.6e-09 63.9 112 40.2
SHI00507 Sapria himalayana HOM05D000786 ORTHO05D000779 1.5e-08 63.2 45 60.0
Potri.005G019900 Populus trichocarpa HOM05D000786 ORTHO05D000779 1.9e-08 62.8 58 53.4
Lalb_Chr02g0147911 Lupinus albus HOM05D013158 ORTHO05D000779 2.5e-08 62.4 112 40.2
Potri.013G010600 Populus trichocarpa HOM05D000786 ORTHO05D000779 2.5e-08 62.4 45 64.4
Cpa.g.sc48.139 Carica papaya HOM05D000786 ORTHO05D000779 3.3e-08 62.0 57 50.9
CsaV3_3G005210 Cucumis sativus L. HOM05D000786 ORTHO05D000779 3.3e-08 62.0 113 38.9
TAR636G3362 Trochodendron aralioides HOM05D000786 ORTHO05D000779 3.3e-08 62.0 58 55.2
CiPaw.07G114700 Carya illinoinensis HOM05D000786 ORTHO05D000779 4.3e-08 61.6 47 61.7
Manes.09G175200 Manihot esculenta HOM05D000786 ORTHO05D000779 4.3e-08 61.6 45 60.0
AUR62005266 Chenopodium quinoa HOM05D000786 ORTHO05D000779 7.3e-08 60.8 45 57.8
Cpa.g.sc18.2 Carica papaya HOM05D000786 ORTHO05D000779 9.5e-08 60.5 48 60.4
Phvul.001G225900 Phaseolus vulgaris HOM05D059857 ORTHO05D000779 9.5e-08 60.5 81 43.2
EL10Ac4g09862 Beta vulgaris HOM05D000786 ORTHO05D000779 1.2e-07 60.1 45 57.8
ClCG06G009930 Citrullus lanatus HOM05D000786 ORTHO05D000779 1.2e-07 60.1 109 33.9
Nitab4.5_0000116g0100 Nicotiana tabacum HOM05D000786 ORTHO05D000779 1.2e-07 60.1 105 34.3
Nitab4.5_0004002g0020 Nicotiana tabacum HOM05D000786 ORTHO05D000779 1.2e-07 60.1 73 42.5
CAN.G668.24 Capsicum annuum HOM05D000786 ORTHO05D000779 1.6e-07 59.7 105 35.2
Peaxi162Scf00001g00286 Petunia axillaris HOM05D000786 ORTHO05D000779 2.1e-07 59.3 106 35.8
Os07g0690200 Oryza sativa ssp. japonica HOM05D000786 ORTHO05D000779 3.6e-07 58.5 57 52.6
Atru.chr5.1054 Acer truncatum HOM05D000786 ORTHO05D000779 4.7e-07 58.2 57 49.1
Ciclev10003628m.g Citrus clementina HOM05D000786 ORTHO05D000779 4.7e-07 58.2 47 55.3
MELO3C008511.2 Cucumis melo HOM05D000786 ORTHO05D000779 4.7e-07 58.2 94 38.3
Lj5g0017815 Lotus japonicus HOM05D013158 ORTHO05D000779 4.7e-07 58.2 48 58.3
Manes.05G001600 Manihot esculenta HOM05D000786 ORTHO05D000779 4.7e-07 58.2 88 42.0
Solyc09g075650.3 Solanum lycopersicum HOM05D000786 ORTHO05D000779 4.7e-07 58.2 47 55.3
Sopen09g030450 Solanum pennellii HOM05D000786 ORTHO05D000779 4.7e-07 58.2 49 53.1
TAR362G0003 Trochodendron aralioides HOM05D000786 ORTHO05D000779 4.7e-07 58.2 82 46.3
Duzib138G1722 Durio zibethinus HOM05D000786 ORTHO05D000779 6.2e-07 57.8 49 55.1
Potri.006G147700 Populus trichocarpa HOM05D000786 ORTHO05D000779 6.2e-07 57.8 49 59.2
Solyc08g062810.1 Solanum lycopersicum HOM05D000786 ORTHO05D000779 6.2e-07 57.8 50 56.0
Thecc.05G320600 Theobroma cacao HOM05D000786 ORTHO05D000779 6.2e-07 57.8 104 39.4
BcaC05g30093 Brassica carinata HOM05D011267 ORTHO05D013190 8.0e-07 57.4 50 52.0
BolC5t34808H Brassica oleracea HOM05D011267 ORTHO05D013190 8.0e-07 57.4 50 52.0
Cfa005844 Carpinus fangiana HOM05D000786 ORTHO05D000779 8.0e-07 57.4 61 50.8
Sed0011211 Sechium edule HOM05D000786 ORTHO05D000779 8.0e-07 57.4 41 65.9
TAR365G1099 Trochodendron aralioides HOM05D000786 ORTHO05D000779 8.0e-07 57.4 62 48.4
Gohir.D12G130300 Gossypium hirsutum HOM05D000786 ORTHO05D000779 1.1e-06 57.0 82 42.7
Os05g0356800 Oryza sativa ssp. japonica HOM05D000786 ORTHO05D000779 1.1e-06 57.0 42 61.9
CSS0023598 Camellia sinensis var. sinensis HOM05D000786 ORTHO05D000779 1.4e-06 56.6 55 47.3
Ciclev10009884m.g Citrus clementina HOM05D000786 ORTHO05D000779 1.4e-06 56.6 73 41.1
Ciclev10022952m.g Citrus clementina HOM05D000786 ORTHO05D000779 1.4e-06 56.6 83 42.2
Mapoly0050s0122 Marchantia polymorpha HOM05D000786 ORTHO05D000779 1.4e-06 56.6 73 45.2
Medtr7g109290 Medicago truncatula HOM05D000786 ORTHO05D000779 1.4e-06 56.6 47 55.3
Zm00001eb285950 Zea mays HOM05D000786 ORTHO05D000779 1.4e-06 56.6 46 60.9
BcaB02g08768 Brassica carinata HOM05D000786 ORTHO05D000779 1.8e-06 56.2 69 44.9
Thhalv10001686m.g Eutrema salsugineum HOM05D000786 ORTHO05D000779 1.8e-06 56.2 48 56.2
MBI18_g24950_MAGBIO Magnolia biondii HOM05D000786 ORTHO05D000779 1.8e-06 56.2 48 56.2
Sed0019056 Sechium edule HOM05D000786 ORTHO05D000779 1.8e-06 56.2 112 30.4
unitig_748.g7530 Utricularia gibba HOM05D000786 ORTHO05D000779 1.8e-06 56.2 49 55.1
COL.COLO4_08863 Corchorus olitorius HOM05D000786 ORTHO05D000779 2.3e-06 55.8 49 55.1
CsaV3_4G001090 Cucumis sativus L. HOM05D000786 ORTHO05D000779 2.3e-06 55.8 69 44.9
Manes.01G225400 Manihot esculenta HOM05D000786 ORTHO05D000779 2.3e-06 55.8 58 50.0
Nitab4.5_0011367g0010 Nicotiana tabacum HOM05D000786 ORTHO05D000779 2.3e-06 55.8 46 56.5
QL12p028929 Quercus lobata HOM05D000786 ORTHO05D000779 2.3e-06 55.8 49 53.1
SEGI_03186 Sequoiadendron giganteum HOM05D000786 ORTHO05D000779 2.3e-06 55.8 65 47.7
CANSAT54G0637 Cannabis sativa HOM05D000786 ORTHO05D000779 3.1e-06 55.5 46 58.7
Cpa.g.sc25.79 Carica papaya HOM05D000786 ORTHO05D000779 3.1e-06 55.5 46 58.7
ClCG10G005480 Citrullus lanatus HOM05D000786 ORTHO05D000779 3.1e-06 55.5 113 36.3
DCAR_002871 Daucus carota HOM05D000786 ORTHO05D000779 3.1e-06 55.5 48 52.1
Migut.N02109 Erythranthe guttata HOM05D000786 ORTHO05D000779 3.1e-06 55.5 43 58.1
Gohir.A12G126900 Gossypium hirsutum HOM05D000786 ORTHO05D000779 3.1e-06 55.5 82 40.2
Gorai.008G141600 Gossypium raimondii HOM05D000786 ORTHO05D000779 3.1e-06 55.5 81 42.0
Nitab4.5_0001790g0020 Nicotiana tabacum HOM05D000786 ORTHO05D000779 3.1e-06 55.5 56 50.0
Cc06_g11610 Coffea canephora HOM05D000786 ORTHO05D000779 4.0e-06 55.1 46 56.5
Duzib133G0956 Durio zibethinus HOM05D000786 ORTHO05D000779 4.0e-06 55.1 81 40.7
Glyma.19G214700 Glycine max HOM05D000786 ORTHO05D000779 4.0e-06 55.1 73 42.5
Phvul.001G211500 Phaseolus vulgaris HOM05D000786 ORTHO05D000779 4.0e-06 55.1 48 52.1
Zm00001eb396430 Zea mays HOM05D000786 ORTHO05D000779 4.0e-06 55.1 43 55.8
Duzib177G0463 Durio zibethinus HOM05D000786 ORTHO05D000779 5.2e-06 54.7 99 39.4
Nn3g21623 Nelumbo nucifera HOM05D000786 ORTHO05D000779 5.2e-06 54.7 63 50.8
Os03g0302500 Oryza sativa ssp. japonica HOM05D000786 ORTHO05D000779 5.2e-06 54.7 43 53.5
ClCG03G015430 Citrullus lanatus HOM05D000786 ORTHO05D000779 6.8e-06 54.3 73 39.7
Migut.B00992 Erythranthe guttata HOM05D000786 ORTHO05D000779 6.8e-06 54.3 76 40.8
Gohir.A11G272500 Gossypium hirsutum HOM05D000786 ORTHO05D000779 6.8e-06 54.3 45 55.6
Gohir.D11G282700 Gossypium hirsutum HOM05D000786 ORTHO05D000779 6.8e-06 54.3 45 55.6
Gorai.007G305500 Gossypium raimondii HOM05D000786 ORTHO05D000779 6.8e-06 54.3 45 55.6
Peaxi162Scf00297g00033 Petunia axillaris HOM05D000786 ORTHO05D000779 6.8e-06 54.3 69 42.0
SalBow4G2499 Salvia bowleyana HOM05D000786 ORTHO05D000779 6.8e-06 54.3 65 43.1
PGSC0003DMG400031801 Solanum tuberosum HOM05D000786 ORTHO05D000779 6.8e-06 54.3 87 36.8
Zm00001eb130280 Zea mays HOM05D000786 ORTHO05D000779 6.8e-06 54.3 58 48.3
A05p00450 Brassica napus HOM05D000786 ORTHO05D000779 8.9e-06 53.9 69 46.4
BraA05t19043Z Brassica rapa HOM05D000786 ORTHO05D000779 8.9e-06 53.9 69 46.4
CANSAT56G0558 Cannabis sativa HOM05D000786 ORTHO05D000779 8.9e-06 53.9 46 54.3
CAN.G57.13 Capsicum annuum HOM05D000786 ORTHO05D000779 8.9e-06 53.9 70 45.7
Duzib235G0670 Durio zibethinus HOM05D000786 ORTHO05D000779 8.9e-06 53.9 60 45.0
Gohir.D08G223500 Gossypium hirsutum HOM05D000786 ORTHO05D000779 8.9e-06 53.9 45 53.3
Gorai.004G237400 Gossypium raimondii HOM05D000786 ORTHO05D000779 8.9e-06 53.9 45 53.3
Oeu047100.1 Olea europaea HOM05D000786 ORTHO05D000779 8.9e-06 53.9 53 52.8
PGR119G0416 Punica granatum HOM05D000786 ORTHO05D000779 8.9e-06 53.9 47 51.1


User provided reference genes

Program Settings