Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G16056 Trifolium pratense HOM05D002452 ORTHO05D006766 1.6e-281 972.2 527 100.0
Psat0s2485g0160 Pisum sativum HOM05D002452 ORTHO05D006766 4.5e-220 768.1 534 79.6
Medtr2g075820 Medicago truncatula HOM05D002452 ORTHO05D006766 1.2e-212 743.4 535 76.8
Ca_03951_v3 Cicer arietinum L. HOM05D002452 ORTHO05D006766 1.4e-205 719.9 536 76.3
Glyma.12G231200 Glycine max HOM05D002452 ORTHO05D006766 1.3e-195 686.8 536 71.1
Lj3g0025969 Lotus japonicus HOM05D002452 ORTHO05D006766 2.7e-193 679.1 531 70.2
arahy.Tifrunner.gnm1.ann1.69X35Q Arachis hypogaea HOM05D002452 ORTHO05D006766 1.5e-191 673.3 534 69.5
arahy.Tifrunner.gnm1.ann1.T9SFGX Arachis hypogaea HOM05D002452 ORTHO05D006766 1.2e-185 653.7 539 68.1
Lalb_Chr20g0109181 Lupinus albus HOM05D002452 ORTHO05D006766 2.0e-183 646.4 536 68.1
VMungo1080G0044 Vigna mungo HOM05D002452 ORTHO05D006766 1.7e-179 633.3 534 66.9
Phvul.005G080800 Phaseolus vulgaris HOM05D002452 ORTHO05D006766 1.2e-177 627.1 534 65.7
Lalb_Chr25g0285731 Lupinus albus HOM05D002452 ORTHO05D006766 8.0e-169 597.8 536 63.8
Cfa019543 Carpinus fangiana HOM05D002452 ORTHO05D006766 7.8e-148 528.1 553 57.9
CiPaw.12G112400 Carya illinoinensis HOM05D002452 ORTHO05D006766 2.0e-143 513.5 556 56.7
QL08p025729 Quercus lobata HOM05D002452 ORTHO05D006766 3.7e-142 509.2 560 55.5
Prupe.4G160000 Prunus persica HOM05D002452 ORTHO05D006766 1.2e-135 487.6 563 55.1
Thecc.07G126400 Theobroma cacao HOM05D002452 ORTHO05D006766 1.1e-130 471.1 551 54.1
Gohir.A04G043100 Gossypium hirsutum HOM05D002452 ORTHO05D006766 3.6e-129 466.1 551 52.8
RcHm_v2.0_Chr5g0030441 Rosa chinensis HOM05D002452 ORTHO05D006766 3.1e-128 463.0 577 54.6
MD11G1266100 Malus domestica HOM05D002452 ORTHO05D006766 5.2e-128 462.2 545 57.1
Gorai.009G366800 Gossypium raimondii HOM05D002452 ORTHO05D006766 1.9e-125 453.8 554 52.2
vmacro11955 Vaccinium macrocarpon HOM05D002452 ORTHO05D006766 2.7e-124 449.9 561 50.4
Ciclev10019497m.g Citrus clementina HOM05D002452 ORTHO05D006766 3.5e-124 449.5 550 51.8
Atru.chr2.2062 Acer truncatum HOM05D002452 ORTHO05D006766 2.3e-123 446.8 556 53.1
COL.COLO4_17511 Corchorus olitorius HOM05D002452 ORTHO05D006766 3.9e-123 446.0 565 50.4
Gohir.D05G340400 Gossypium hirsutum HOM05D002452 ORTHO05D006766 1.9e-122 443.7 547 52.1
Dinv18382 Davidia involucrata HOM05D002452 ORTHO05D006766 9.6e-122 441.4 544 51.5
Rhsim06G0210300 Rhododendron simsii HOM05D002452 ORTHO05D006766 8.1e-121 438.3 605 46.4
Actinidia12591 Actinidia chinensis HOM05D002452 ORTHO05D006766 3.1e-120 436.4 557 49.4
CSS0001384 Camellia sinensis var. sinensis HOM05D002452 ORTHO05D006766 5.3e-120 435.6 544 52.9
Potri.001G387300 Populus trichocarpa HOM05D002452 ORTHO05D006766 5.3e-120 435.6 543 50.8
TWI39G0752 Tripterygium wilfordii HOM05D002452 ORTHO05D006766 1.3e-118 431.0 546 50.2
CsaV3_4G033030 Cucumis sativus L. HOM05D002452 ORTHO05D006766 8.4e-118 428.3 555 50.5
MELO3C025646.2 Cucumis melo HOM05D002452 ORTHO05D006766 1.4e-117 427.6 555 51.0
Gohir.D01G040900 Gossypium hirsutum HOM05D002452 ORTHO05D006766 4.2e-117 426.0 552 48.7
GSVIVG01014168001 Vitis vinifera HOM05D002452 ORTHO05D006766 7.1e-117 425.2 548 50.7
ClCG11G017390 Citrullus lanatus HOM05D002452 ORTHO05D006766 1.2e-116 424.5 566 50.4
Duzib213G0380 Durio zibethinus HOM05D002452 ORTHO05D006766 2.7e-116 423.3 556 49.8
TAR626G0804 Trochodendron aralioides HOM05D002452 ORTHO05D006766 6.0e-116 422.2 559 48.5
FvH4_3g18120 Fragaria vesca HOM05D002452 ORTHO05D006766 1.7e-115 420.6 592 51.5
AUR62019605 Chenopodium quinoa HOM05D002452 ORTHO05D006766 7.3e-114 415.2 551 48.6
Gorai.002G051000 Gossypium raimondii HOM05D002452 ORTHO05D006766 7.3e-114 415.2 551 48.3
TAR627G0084 Trochodendron aralioides HOM05D002452 ORTHO05D006766 7.3e-114 415.2 555 47.9
Lj8C147T4 Lonicera japonica HOM05D002452 ORTHO05D006766 9.6e-114 414.8 589 47.0
Glyma.13G268300 Glycine max HOM05D002452 ORTHO05D006766 2.8e-113 413.3 293 73.4
CANSAT35G1635 Cannabis sativa HOM05D002452 ORTHO05D006766 1.4e-112 411.0 584 46.9
Haze_09304 Corylus avellana HOM05D002452 ORTHO05D006766 4.0e-112 409.5 470 56.2
RcHm_v2.0_Chr5g0030521 Rosa chinensis HOM05D002452 ORTHO05D006766 6.9e-112 408.7 574 51.4
Cc05_g10930 Coffea canephora HOM05D002452 ORTHO05D006766 1.2e-111 407.9 554 48.2
Sed0025986 Sechium edule HOM05D002452 ORTHO05D006766 1.5e-111 407.5 555 47.6
Eucgr.F01252 Eucalyptus grandis HOM05D002452 ORTHO05D006766 1.9e-109 400.6 548 47.4
Manes.03G099700 Manihot esculenta HOM05D002452 ORTHO05D006766 1.2e-108 397.9 545 53.0
PGR083G1533 Punica granatum HOM05D002452 ORTHO05D006766 1.8e-107 394.0 548 47.4
FAN11G1668 Fragaria x ananassa HOM05D003130 ORTHO05D003547 3.9e-107 392.9 569 51.1
Sc03g0010610 Simmondsia chinensis HOM05D002452 ORTHO05D006766 1.1e-106 391.3 546 46.7
Nn3g21096 Nelumbo nucifera HOM05D002452 ORTHO05D006766 1.5e-106 391.0 587 45.8
Atru.chr10.1169 Acer truncatum HOM05D002452 ORTHO05D006766 2.5e-106 390.2 515 51.1
Nitab4.5_0000383g0070 Nicotiana tabacum HOM05D002452 ORTHO05D006766 2.8e-105 386.7 550 48.7
EL10Ac4g08382 Beta vulgaris HOM05D002452 ORTHO05D006766 3.4e-103 379.8 556 45.0
Sopen10g003230 Solanum pennellii HOM05D002452 ORTHO05D006766 4.9e-102 375.9 568 46.0
Peaxi162Scf00692g00318 Petunia axillaris HOM05D002452 ORTHO05D006766 6.5e-102 375.6 552 47.5
SalBow8G0660 Salvia bowleyana HOM05D002452 ORTHO05D006766 8.4e-102 375.2 554 46.6
SalBow1G0777 Salvia bowleyana HOM05D002452 ORTHO05D006766 4.2e-101 372.9 554 46.4
Solyc10g007400.4 Solanum lycopersicum HOM05D002452 ORTHO05D006766 5.5e-101 372.5 570 46.1
CAN.G904.34 Capsicum annuum HOM05D002452 ORTHO05D006766 1.3e-99 367.9 556 45.5
Aqoxy1G01990 Aquilegia oxysepala HOM05D002452 ORTHO05D006766 3.9e-99 366.3 558 45.2
HanXRQChr15g0495181 Helianthus annuus HOM05D002452 ORTHO05D006766 5.1e-99 365.9 552 45.7
THA.LOC104808089 Tarenaya hassleriana HOM05D002452 ORTHO05D006766 5.1e-99 365.9 539 45.5
DCAR_013269 Daucus carota HOM05D002452 ORTHO05D006766 6.7e-99 365.5 594 43.9
SGA_v2.0_scaffold73G24396 Striga asiatica HOM05D002452 ORTHO05D006766 3.3e-98 363.2 545 44.0
SGA_v2.0_scaffold181G39753 Striga asiatica HOM05D002452 ORTHO05D006766 1.4e-96 357.8 545 44.0
AUR62037577 Chenopodium quinoa HOM05D002452 ORTHO05D006766 9.0e-96 355.1 528 47.3
Oeu025328.2 Olea europaea HOM05D002452 ORTHO05D006766 4.5e-95 352.8 544 45.2
MSTRG.14972 Avicennia marina HOM05D002452 ORTHO05D006766 1.0e-94 351.7 552 45.3
Lsat_1_v5_gn_7_102200 Lactuca sativa HOM05D002452 ORTHO05D006766 1.4e-93 347.8 553 47.7
FAN16G1664 Fragaria x ananassa HOM05D002452 ORTHO05D006766 2.1e-92 344.0 467 49.5
Gohir.A01G051100 Gossypium hirsutum HOM05D002452 ORTHO05D006766 3.0e-91 340.1 442 49.1
Thhalv10018425m.g Eutrema salsugineum HOM05D002452 ORTHO05D006766 8.7e-91 338.6 545 42.9
TAR636G0392 Trochodendron aralioides HOM05D001914 ORTHO05D006766 2.5e-90 337.0 569 40.9
ECA236G2857 Erigeron canadensis HOM05D002452 ORTHO05D006766 9.7e-90 335.1 554 41.5
PGSC0003DMG400021257 Solanum tuberosum HOM05D002452 ORTHO05D006766 1.3e-89 334.7 647 40.3
PSO675G8136 Papaver somniferum HOM05D002452 ORTHO05D006766 6.3e-89 332.4 555 41.8
PSO541G2585 Papaver somniferum HOM05D002452 ORTHO05D006766 1.1e-88 331.6 557 42.4
CDE04G3284 Ceratophyllum demersum HOM05D002452 ORTHO05D006766 1.8e-88 330.9 554 41.2
BraA07t31897Z Brassica rapa HOM05D002452 ORTHO05D006766 6.9e-88 328.9 534 42.5
A07p43910 Brassica napus HOM05D002452 ORTHO05D006766 1.5e-87 327.8 534 42.5
Sp5g33730 Schrenkiella parvula HOM05D002452 ORTHO05D006766 1.5e-87 327.8 550 41.3
BcaC08g47423 Brassica carinata HOM05D002452 ORTHO05D006766 3.4e-87 326.6 533 41.5
CARHR072180 Cardamine hirsuta HOM05D002452 ORTHO05D006766 1.3e-86 324.7 538 41.3
FAN25G3870 Fragaria x ananassa HOM05D003130 ORTHO05D003547 2.2e-86 323.9 542 47.0
AL2G39060 Arabidopsis lyrata HOM05D002452 ORTHO05D006766 8.5e-86 322.0 542 41.3
Migut.M00711 Erythranthe guttata HOM05D002452 ORTHO05D006766 1.1e-85 321.6 562 45.7
Carub.0002s2550 Capsella rubella HOM05D002452 ORTHO05D006766 4.2e-85 319.7 550 39.1
BcaC08g47422 Brassica carinata HOM05D002452 ORTHO05D006766 2.7e-84 317.0 535 41.1
MD03G1244600 Malus domestica HOM05D002452 ORTHO05D006766 3.6e-84 316.6 311 57.2
Zm00001eb120810 Zea mays HOM05D002452 ORTHO05D006766 5.7e-82 309.3 540 40.4
AT1G78650 Arabidopsis thaliana HOM05D002452 ORTHO05D006766 9.7e-82 308.5 466 41.4
Aa31LG4G2320 Aethionema arabicum HOM05D002452 ORTHO05D006766 1.1e-80 305.1 576 40.3
Zm00001eb338160 Zea mays HOM05D002452 ORTHO05D006766 1.1e-80 305.1 553 40.9
Actinidia07509 Actinidia chinensis HOM05D002452 ORTHO05D006766 1.8e-80 304.3 402 47.8
Eucgr.F01259 Eucalyptus grandis HOM05D002452 ORTHO05D006766 2.4e-80 303.9 469 44.1
Ah.04g164150 Amaranthus hybridus HOM05D003130 ORTHO05D003547 1.3e-78 298.1 573 39.6
HPP92_024061 Vanilla planifolia HOM05D002452 ORTHO05D006766 3.1e-72 276.9 550 39.1
Eucgr.F01317 Eucalyptus grandis HOM05D002452 ORTHO05D006766 7.7e-71 272.3 295 51.2
C06p52530 Brassica napus HOM05D002452 ORTHO05D006585 2.9e-70 270.4 524 38.2
BolC6t40272H Brassica oleracea HOM05D002452 ORTHO05D006585 2.9e-70 270.4 524 38.2
Os01g0204000 Oryza sativa ssp. japonica HOM05D002452 ORTHO05D006766 6.5e-70 269.2 545 37.1
RcHm_v2.0_Chr5g0030351 Rosa chinensis HOM05D002452 ORTHO05D006766 2.1e-68 264.2 442 49.5
Cpa.g.sc77.52 Carica papaya HOM05D002452 ORTHO05D006766 4.7e-68 263.1 376 48.4
RcHm_v2.0_Chr5g0030181 Rosa chinensis HOM05D002452 ORTHO05D006766 2.6e-66 257.3 443 49.2
SEGI_19501 Sequoiadendron giganteum HOM05D002452 ORTHO05D006766 3.1e-64 250.4 581 35.5
ATR0012G041 Amborella trichopoda HOM05D002452 ORTHO05D006766 2.5e-61 240.7 550 36.5
Pp3c27_7450 Physcomitrium patens HOM05D002452 ORTHO05D006766 3.6e-52 210.3 473 35.1
Hund10543 Selenicereus undatus HOM05D002452 ORTHO05D006766 3.0e-51 207.2 399 39.3
PSO541G6050 Papaver somniferum HOM05D002452 ORTHO05D006766 2.3e-46 191.0 336 40.2
Mapoly0011s0137 Marchantia polymorpha HOM05D002452 ORTHO05D006766 1.3e-41 175.3 575 29.9
AagrBONN_evm.TU.Sc2ySwM_368.2647 Anthoceros agrestis HOM05D002452 ORTHO05D006766 4.9e-41 173.3 582 29.7
SMO172G0197 Selaginella moellendorffii HOM05D000586 ORTHO05D003356 1.5e-37 161.8 531 29.4
Eucgr.F01264 Eucalyptus grandis HOM05D002452 ORTHO05D006766 4.7e-36 156.8 405 34.3
Zm00001eb317290 Zea mays HOM05D002452 ORTHO05D006766 5.2e-35 153.3 267 40.4
CBR_g36415 Chara braunii HOM05D002452 ORTHO05D006766 6.8e-27 126.3 178 36.5
SpUn0074_0010 Schrenkiella parvula HOM05D002452 ORTHO05D006766 3.2e-24 117.5 253 39.1
MD03G1244500 Malus domestica HOM05D002452 ORTHO05D006766 2.7e-23 114.4 185 53.0
Zm00001eb370750 Zea mays HOM05D002452 ORTHO05D006766 1.9e-21 108.2 234 37.6
Zm00001eb137460 Zea mays HOM05D002452 ORTHO05D006766 2.3e-19 101.3 250 34.4
Zm00001eb002150 Zea mays HOM05D002452 ORTHO05D006766 8.9e-19 99.4 212 40.1
RcHm_v2.0_Chr5g0030251 Rosa chinensis HOM05D002452 ORTHO05D006766 3.7e-17 94.0 135 59.3
Cre03.g202250 Chlamydomonas reinhardtii HOM05D002452 ORTHO05D006766 3.5e-15 87.4 159 30.8
Zm00001eb409150 Zea mays HOM05D002452 ORTHO05D006766 6.0e-15 86.7 196 34.7
Zm00001eb309500 Zea mays HOM05D002452 ORTHO05D006766 1.9e-13 81.6 62 56.5
Zm00001eb024250 Zea mays HOM05D002452 ORTHO05D006766 5.6e-13 80.1 160 40.6
Zm00001eb017750 Zea mays HOM05D002452 ORTHO05D006766 3.4e-10 70.9 106 48.1
Zm00001eb038850 Zea mays HOM05D002452 ORTHO05D006766 3.4e-10 70.9 106 48.1
Zm00001eb100520 Zea mays HOM05D002452 ORTHO05D006766 3.4e-10 70.9 106 48.1
Zm00001eb188790 Zea mays HOM05D002452 ORTHO05D006766 3.4e-10 70.9 106 48.1
Zm00001eb319080 Zea mays HOM05D002452 ORTHO05D006766 3.4e-10 70.9 106 48.1
Zm00001eb343810 Zea mays HOM05D002452 ORTHO05D006766 3.4e-10 70.9 106 48.1
Zm00001eb309510 Zea mays HOM05D002452 ORTHO05D006766 4.4e-10 70.5 125 41.6
Gohir.A01G051000 Gossypium hirsutum HOM05D002452 ORTHO05D006766 1.3e-09 68.9 108 41.7
MCO14G309 Micromonas commoda HOM05D002452 ORTHO05D006766 1.1e-08 65.9 213 26.3
Haze_09303 Corylus avellana HOM05D000808 ORTHO05D000863 3.0e-06 57.8 37 70.3


User provided reference genes

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