Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G16054 Trifolium pratense HOM05D005439 ORTHO05D006793 3.3e-101 371.7 187 100.0
Psat5g245080 Pisum sativum HOM05D005439 ORTHO05D006793 8.0e-55 217.6 169 69.8
Medtr2g079590 Medicago truncatula HOM05D005439 ORTHO05D006793 1.8e-54 216.5 134 83.6
Lj3g0027158 Lotus japonicus HOM05D005439 ORTHO05D006793 3.0e-54 215.7 145 78.6
Lj1g0010486 Lotus japonicus HOM05D005439 ORTHO05D006793 6.3e-52 208.0 138 80.4
Glyma.13G278900 Glycine max HOM05D005439 ORTHO05D006793 8.3e-52 207.6 136 79.4
Lalb_Chr20g0109751 Lupinus albus HOM05D005439 ORTHO05D006793 3.8e-49 198.7 139 72.7
arahy.Tifrunner.gnm1.ann1.5K0R4Y Arachis hypogaea HOM05D005439 ORTHO05D006793 2.8e-44 182.6 161 59.6
TAR624G0176 Trochodendron aralioides HOM05D005439 ORTHO05D006793 4.0e-38 162.2 113 70.8
CiPaw.12G120500 Carya illinoinensis HOM05D005439 ORTHO05D006793 3.4e-37 159.1 126 63.5
vmacro08610 Vaccinium macrocarpon HOM05D005439 ORTHO05D006793 3.4e-37 159.1 125 63.2
Phvul.005G083100 Phaseolus vulgaris HOM05D005439 ORTHO05D006793 4.4e-37 158.7 131 65.6
CSS0022813 Camellia sinensis var. sinensis HOM05D005439 ORTHO05D006793 9.8e-37 157.5 117 63.2
Dinv04318 Davidia involucrata HOM05D005439 ORTHO05D006793 1.7e-36 156.8 119 63.0
Peaxi162Scf00998g00023 Petunia axillaris HOM05D005439 ORTHO05D006793 2.2e-36 156.4 131 61.8
TAR626G0706 Trochodendron aralioides HOM05D005439 ORTHO05D006793 6.4e-36 154.8 123 65.9
Cc04_g05330 Coffea canephora HOM05D005439 ORTHO05D006793 8.3e-36 154.5 160 48.8
Haze_09469 Corylus avellana HOM05D005439 ORTHO05D006793 1.8e-35 153.3 145 57.2
Rhsim04G0164900 Rhododendron simsii HOM05D005439 ORTHO05D006793 1.8e-35 153.3 122 62.3
CiPaw.08G146000 Carya illinoinensis HOM05D005439 ORTHO05D006793 2.4e-35 152.9 126 60.3
TWI15G0142 Tripterygium wilfordii HOM05D005439 ORTHO05D006793 3.2e-35 152.5 130 58.5
GSVIVG01014379001 Vitis vinifera HOM05D005439 ORTHO05D006793 3.2e-35 152.5 137 54.7
arahy.Tifrunner.gnm1.ann1.KJ06EE Arachis hypogaea HOM05D005439 ORTHO05D006793 4.1e-35 152.1 217 42.4
Duzib170G0676 Durio zibethinus HOM05D005439 ORTHO05D006793 4.1e-35 152.1 129 63.6
Manes.15G085800 Manihot esculenta HOM05D005439 ORTHO05D006793 5.4e-35 151.8 124 59.7
Actinidia01110 Actinidia chinensis HOM05D005439 ORTHO05D006793 1.2e-34 150.6 111 64.9
Nitab4.5_0003769g0120 Nicotiana tabacum HOM05D005439 ORTHO05D006793 1.2e-34 150.6 128 57.0
Gohir.D13G039100 Gossypium hirsutum HOM05D005439 ORTHO05D006793 2.7e-34 149.4 118 62.7
Thecc.07G077600 Theobroma cacao HOM05D005439 ORTHO05D006793 2.7e-34 149.4 114 65.8
Gorai.007G319700 Gossypium raimondii HOM05D005439 ORTHO05D006793 1.0e-33 147.5 118 62.7
ECA240G1812 Erigeron canadensis HOM05D005439 ORTHO05D006793 1.3e-33 147.1 123 61.8
Gohir.D11G296600 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.3e-33 147.1 118 62.7
Gohir.A08G188900 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.7e-33 146.7 118 61.9
Gohir.D08G040300 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.7e-33 146.7 118 61.9
Gohir.D10G173200 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.7e-33 146.7 118 61.9
COL.COLO4_09427 Corchorus olitorius HOM05D005439 ORTHO05D006793 2.3e-33 146.4 125 60.8
Lsat_1_v5_gn_9_97181 Lactuca sativa HOM05D005439 ORTHO05D006793 2.3e-33 146.4 113 61.9
Dinv30229 Davidia involucrata HOM05D005439 ORTHO05D006793 3.0e-33 146.0 110 64.5
Gohir.D11G168400 Gossypium hirsutum HOM05D005439 ORTHO05D006793 3.0e-33 146.0 118 61.9
Gohir.A05G386100 Gossypium hirsutum HOM05D005439 ORTHO05D006793 5.0e-33 145.2 118 61.0
Aqoxy6G01973 Aquilegia oxysepala HOM05D005439 ORTHO05D006793 6.6e-33 144.8 134 55.2
CANSAT80G2923 Cannabis sativa HOM05D005439 ORTHO05D006793 6.6e-33 144.8 122 61.5
Gohir.A11G282786 Gossypium hirsutum HOM05D005439 ORTHO05D006793 6.6e-33 144.8 118 61.9
RcHm_v2.0_Chr5g0034441 Rosa chinensis HOM05D005439 ORTHO05D006793 8.6e-33 144.4 113 58.4
Gohir.A08G058200 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.5e-32 143.7 118 61.0
Prupe.4G185100 Prunus persica HOM05D005439 ORTHO05D006793 1.5e-32 143.7 124 56.5
Aqoxy1G02538 Aquilegia oxysepala HOM05D005439 ORTHO05D006793 3.3e-32 142.5 134 53.7
Cpa.g.sc53.123 Carica papaya HOM05D005439 ORTHO05D006793 3.3e-32 142.5 119 60.5
Lsat_1_v5_gn_9_97261 Lactuca sativa HOM05D005439 ORTHO05D006793 3.3e-32 142.5 111 63.1
CAN.G162.72 Capsicum annuum HOM05D005439 ORTHO05D006793 5.6e-32 141.7 139 55.4
RcHm_v2.0_Chr6g0279991 Rosa chinensis HOM05D005439 ORTHO05D006793 1.2e-31 140.6 108 60.2
TPR.G39010 Trifolium pratense HOM05D005439 ORTHO05D006793 1.2e-31 140.6 78 91.0
Nn1g04026 Nelumbo nucifera HOM05D005439 ORTHO05D006793 1.6e-31 140.2 138 55.1
DCAR_000742 Daucus carota HOM05D005439 ORTHO05D006793 2.1e-31 139.8 120 60.0
Gohir.A11G204100 Gossypium hirsutum HOM05D005439 ORTHO05D006793 2.1e-31 139.8 125 58.4
Gorai.010G125600 Gossypium raimondii HOM05D005439 ORTHO05D006793 2.8e-31 139.4 118 61.0
PSO675G4650 Papaver somniferum HOM05D005439 ORTHO05D006793 2.8e-31 139.4 116 58.6
AUR62034281 Chenopodium quinoa HOM05D005439 ORTHO05D006793 3.6e-31 139.0 126 54.8
Eucgr.I00444 Eucalyptus grandis HOM05D005439 ORTHO05D006793 6.2e-31 138.3 131 57.3
HanXRQChr04g0095481 Helianthus annuus HOM05D005439 ORTHO05D006793 6.2e-31 138.3 123 60.2
Sopen07g031460 Solanum pennellii HOM05D005439 ORTHO05D006793 6.2e-31 138.3 138 55.8
Oeu037221.1 Olea europaea HOM05D005439 ORTHO05D006793 8.0e-31 137.9 131 56.5
PGSC0003DMG400001562 Solanum tuberosum HOM05D005439 ORTHO05D006793 8.0e-31 137.9 137 56.2
Gorai.013G039600 Gossypium raimondii HOM05D005439 ORTHO05D006793 1.4e-30 137.1 127 58.3
PGSC0003DMG400012454 Solanum tuberosum HOM05D005439 ORTHO05D006793 1.4e-30 137.1 138 55.1
MD03G1224300 Malus domestica HOM05D005439 ORTHO05D006793 3.1e-30 136.0 140 51.4
Gorai.013G217100 Gossypium raimondii HOM05D005439 ORTHO05D006793 5.2e-30 135.2 118 60.2
Sabra11G0107800 Salix brachista HOM05D005439 ORTHO05D006793 6.8e-30 134.8 145 49.0
Potri.011G121800 Populus trichocarpa HOM05D005439 ORTHO05D006793 2.0e-29 133.3 129 51.9
Gorai.012G015600 Gossypium raimondii HOM05D005439 ORTHO05D006793 2.6e-29 132.9 118 58.5
Solyc07g063290.3 Solanum lycopersicum HOM05D005439 ORTHO05D006793 3.4e-29 132.5 137 54.7
Gohir.A03G006900 Gossypium hirsutum HOM05D005439 ORTHO05D006793 9.8e-29 131.0 109 62.4
FAN14G2189 Fragaria x ananassa HOM05D005439 ORTHO05D006793 8.3e-28 127.9 115 54.8
ClCG11G007090 Citrullus lanatus HOM05D005439 ORTHO05D006793 1.6e-26 123.6 110 57.3
MELO3C008192.2 Cucumis melo HOM05D005439 ORTHO05D006793 2.0e-26 123.2 114 57.0
Atru.chr2.2728 Acer truncatum HOM05D005439 ORTHO05D006793 2.7e-26 122.9 128 52.3
Atru.chr2.2729 Acer truncatum HOM05D005439 ORTHO05D006793 2.7e-26 122.9 128 52.3
EL10Ac4g09544 Beta vulgaris HOM05D005439 ORTHO05D006793 7.8e-26 121.3 130 45.4
ATR0019G055 Amborella trichopoda HOM05D005439 ORTHO05D006793 3.0e-25 119.4 112 52.7
AUR62042910 Chenopodium quinoa HOM05D005439 ORTHO05D006793 3.0e-25 119.4 123 52.0
Hund22944 Selenicereus undatus HOM05D005439 ORTHO05D006793 5.0e-25 118.6 135 50.4
MBI18_g17006_MAGBIO Magnolia biondii HOM05D005439 ORTHO05D006793 1.1e-24 117.5 124 50.0
Sed0007807 Sechium edule HOM05D005439 ORTHO05D006793 1.1e-24 117.5 119 49.6
Nitab4.5_0010521g0020 Nicotiana tabacum HOM05D005439 ORTHO05D006793 2.8e-23 112.8 121 48.8
Sc18g0002800 Simmondsia chinensis HOM05D005439 ORTHO05D006793 3.6e-23 112.5 112 51.8
Ciclev10009838m.g Citrus clementina HOM05D005439 ORTHO05D006793 1.1e-22 110.9 93 58.1
PGR031G3442 Punica granatum HOM05D005439 ORTHO05D006793 1.1e-22 110.9 118 55.9
BraA02t05327Z Brassica rapa HOM05D005439 ORTHO05D006793 4.0e-22 109.0 122 45.9
CARHR090470 Cardamine hirsuta HOM05D005439 ORTHO05D006793 4.0e-22 109.0 115 50.4
THA.LOC104815550 Tarenaya hassleriana HOM05D005439 ORTHO05D006793 5.2e-22 108.6 115 52.2
A02p03560 Brassica napus HOM05D005439 ORTHO05D006793 8.9e-22 107.8 124 46.0
BcaB08g36849 Brassica carinata HOM05D005439 ORTHO05D006793 3.4e-21 105.9 123 47.2
VMungo1215G1396 Vigna mungo HOM05D005439 ORTHO05D006793 4.4e-21 105.5 100 59.0
BolC2t06755H Brassica oleracea HOM05D005439 ORTHO05D006793 5.8e-21 105.1 115 48.7
PSO541G3703 Papaver somniferum HOM05D005439 ORTHO05D006793 7.5e-21 104.8 88 59.1
unitig_32.g11156 Utricularia gibba HOM05D005439 ORTHO05D006793 1.3e-20 104.0 111 46.8
AL2G40660 Arabidopsis lyrata HOM05D005439 ORTHO05D006793 2.9e-20 102.8 114 51.8
Sp6g27700 Schrenkiella parvula HOM05D005439 ORTHO05D006793 3.7e-20 102.4 124 46.8
C02p08370 Brassica napus HOM05D005439 ORTHO05D006793 4.9e-20 102.1 115 47.8
Carub.0003s1515 Capsella rubella HOM05D005439 ORTHO05D006793 4.9e-20 102.1 110 50.9
C09p60700 Brassica napus HOM05D005439 ORTHO05D006793 6.4e-20 101.7 121 45.5
Migut.H01926 Erythranthe guttata HOM05D005439 ORTHO05D006793 1.1e-19 100.9 124 44.4
AT1G80745 Arabidopsis thaliana HOM05D005439 ORTHO05D006793 1.4e-19 100.5 110 49.1
AT3G15420 Arabidopsis thaliana HOM05D005439 ORTHO05D006793 1.4e-19 100.5 120 48.3
Eucgr.L03232 Eucalyptus grandis HOM05D005439 ORTHO05D006793 1.4e-19 100.5 91 57.1
Gohir.D09G236700 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.9e-19 100.1 85 57.6
AL3G27970 Arabidopsis lyrata HOM05D005439 ORTHO05D006793 3.2e-19 99.4 120 49.2
HPP92_001754 Vanilla planifolia HOM05D005439 ORTHO05D006793 3.2e-19 99.4 111 48.6
Thhalv10021755m.g Eutrema salsugineum HOM05D005439 ORTHO05D006793 1.2e-18 97.4 107 50.5
Mapoly0076s0011 Marchantia polymorpha HOM05D005439 ORTHO05D006793 1.6e-18 97.1 122 41.8
Potri.001G402700 Populus trichocarpa HOM05D005439 ORTHO05D006793 2.1e-18 96.7 104 46.2
SalBow7G3564 Salvia bowleyana HOM05D005439 ORTHO05D006793 6.0e-18 95.1 124 46.0
Os04g0530000 Oryza sativa ssp. japonica HOM05D005439 ORTHO05D006793 1.7e-17 93.6 121 44.6
Zm00001eb403870 Zea mays HOM05D005439 ORTHO05D006793 1.7e-17 93.6 111 47.7
Aa31LG8G2660 Aethionema arabicum HOM05D005439 ORTHO05D006793 3.9e-17 92.4 114 46.5
Gorai.007G117500 Gossypium raimondii HOM05D005439 ORTHO05D006793 1.1e-16 90.9 85 56.5
QL08p019954 Quercus lobata HOM05D005439 ORTHO05D006793 1.5e-16 90.5 81 59.3
Zm00001eb001470 Zea mays HOM05D005439 ORTHO05D006793 1.9e-16 90.1 119 42.9
RcHm_v2.0_Chr2g0143371 Rosa chinensis HOM05D005439 ORTHO05D006793 4.3e-16 89.0 80 51.2
Carub.0002s2680 Capsella rubella HOM05D005439 ORTHO05D006793 5.6e-16 88.6 78 55.1
Sed0010430 Sechium edule HOM05D005439 ORTHO05D006793 9.5e-16 87.8 92 48.9
CDE08G1297 Ceratophyllum demersum HOM05D005439 ORTHO05D006793 1.6e-15 87.0 75 58.7
Gorai.004G187000 Gossypium raimondii HOM05D005439 ORTHO05D006793 1.6e-15 87.0 62 69.4
MD11G1243100 Malus domestica HOM05D005439 ORTHO05D006793 2.1e-15 86.7 111 40.5
AagrBONN_evm.TU.Sc2ySwM_369.384 Anthoceros agrestis HOM05D005439 ORTHO05D006793 2.3e-14 83.2 108 43.5
Pp3c23_5480 Physcomitrium patens HOM05D005439 ORTHO05D006793 4.0e-14 82.4 118 34.7
BcaC03g18493 Brassica carinata HOM05D005439 ORTHO05D006793 8.4e-12 74.7 86 45.3
TPR.G35670 Trifolium pratense HOM05D005439 ORTHO05D006793 1.4e-11 73.9 37 89.2
AUR62029363 Chenopodium quinoa HOM05D005439 ORTHO05D006793 4.6e-10 68.9 60 56.7
QL08p019959 Quercus lobata HOM05D005439 ORTHO05D006793 1.0e-09 67.8 61 55.7
FAN09G1944 Fragaria x ananassa HOM05D005439 ORTHO05D006793 1.5e-08 63.9 45 66.7
FAN02G1859 Fragaria x ananassa HOM05D005439 ORTHO05D006793 2.5e-08 63.2 74 47.3
CsaV3_2G034140 Cucumis sativus L. HOM05D003646 ORTHO05D004503 9.6e-08 61.2 44 68.2
BolC9t58901H Brassica oleracea HOM05D005439 ORTHO05D006793 1.1e-06 57.8 78 41.0
BcaC04g18875 Brassica carinata HOM05D005439 ORTHO05D006793 1.4e-06 57.4 78 41.0


User provided reference genes

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