Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G16047 Trifolium pratense HOM05D003910 ORTHO05D004622 8.4e-222 773.5 418 100.0
Medtr3g088610 Medicago truncatula HOM05D003910 ORTHO05D004622 4.2e-205 718.0 414 90.3
Ca_29570_v3 Cicer arietinum L. HOM05D003910 ORTHO05D004622 5.0e-198 694.5 421 90.3
Ca_16573_v3 Cicer arietinum L. HOM05D003910 ORTHO05D004622 5.5e-197 691.0 416 90.6
Glyma.04G247700 Glycine max HOM05D003910 ORTHO05D004622 3.8e-190 668.3 414 87.0
Phvul.009G127100 Phaseolus vulgaris HOM05D003910 ORTHO05D004622 5.0e-190 667.9 411 86.4
Lj1g0017187 Lotus japonicus HOM05D003910 ORTHO05D004622 4.2e-189 664.8 411 86.6
VMungo1309G0189 Vigna mungo HOM05D003910 ORTHO05D004622 2.7e-188 662.1 411 86.6
Lalb_Chr11g0066041 Lupinus albus HOM05D003910 ORTHO05D004622 1.7e-185 652.9 430 84.0
Lalb_Chr08g0241321 Lupinus albus HOM05D003910 ORTHO05D004622 3.7e-185 651.7 430 83.7
Lj7A342T56 Lonicera japonica HOM05D003910 ORTHO05D004622 1.1e-181 640.2 364 89.3
HanXRQChr17g0559761 Helianthus annuus HOM05D003910 ORTHO05D004622 2.1e-180 636.0 363 88.7
Cfa018581 Carpinus fangiana HOM05D003910 ORTHO05D004622 2.7e-180 635.6 415 78.8
Dinv27301 Davidia involucrata HOM05D003910 ORTHO05D004622 4.7e-180 634.8 383 82.8
MELO3C008086.2 Cucumis melo HOM05D003910 ORTHO05D004622 6.1e-180 634.4 413 84.3
Haze_17499 Corylus avellana HOM05D003910 ORTHO05D004622 1.8e-179 632.9 415 78.6
ClCG11G008960 Citrullus lanatus HOM05D003910 ORTHO05D004622 2.3e-179 632.5 412 84.7
Manes.02G164600 Manihot esculenta HOM05D003910 ORTHO05D004622 3.0e-179 632.1 426 81.5
Manes.18G078475 Manihot esculenta HOM05D003910 ORTHO05D004622 3.0e-179 632.1 424 83.0
Eucgr.F03796 Eucalyptus grandis HOM05D003910 ORTHO05D004622 5.2e-179 631.3 425 83.1
MD15G1346700 Malus domestica HOM05D003910 ORTHO05D004622 5.2e-179 631.3 423 79.2
GSVIVG01008851001 Vitis vinifera HOM05D003910 ORTHO05D004622 5.2e-179 631.3 399 86.2
MD08G1161600 Malus domestica HOM05D003910 ORTHO05D004622 8.8e-179 630.6 389 84.3
Potri.002G082300 Populus trichocarpa HOM05D003910 ORTHO05D004622 1.5e-178 629.8 413 82.6
CsaV3_2G033150 Cucumis sativus L. HOM05D003910 ORTHO05D004622 2.0e-178 629.4 403 85.4
Sabra02G0064500 Salix brachista HOM05D003910 ORTHO05D004622 2.6e-178 629.0 413 83.8
TWI60G1334 Tripterygium wilfordii HOM05D003910 ORTHO05D004622 2.6e-178 629.0 430 81.9
Prupe.1G494300 Prunus persica HOM05D003910 ORTHO05D004622 3.4e-178 628.6 422 79.9
Sed0003239 Sechium edule HOM05D003910 ORTHO05D004622 3.4e-178 628.6 412 84.0
ECA233G1142 Erigeron canadensis HOM05D003910 ORTHO05D004622 4.4e-178 628.2 362 88.7
Psat5g087720 Pisum sativum HOM05D003910 ORTHO05D004622 5.7e-178 627.9 320 96.6
TWI32G0928 Tripterygium wilfordii HOM05D003910 ORTHO05D004622 7.5e-178 627.5 425 81.6
PGR044G2730 Punica granatum HOM05D003910 ORTHO05D004622 4.8e-177 624.8 413 78.7
Solyc08g069030.4 Solanum lycopersicum HOM05D003910 ORTHO05D004622 6.3e-177 624.4 364 84.9
Sopen08g022680 Solanum pennellii HOM05D003910 ORTHO05D004622 6.3e-177 624.4 364 87.1
PGSC0003DMG400029545 Solanum tuberosum HOM05D003910 ORTHO05D004622 8.3e-177 624.0 364 84.6
Cc08_g06800 Coffea canephora HOM05D003910 ORTHO05D004622 1.4e-176 623.2 400 82.0
MSTRG.25378 Avicennia marina HOM05D003910 ORTHO05D004622 1.8e-176 622.9 386 82.1
DCAR_016682 Daucus carota HOM05D003910 ORTHO05D004622 1.8e-176 622.9 364 87.9
TAR629G0788 Trochodendron aralioides HOM05D003910 ORTHO05D004622 1.8e-176 622.9 416 80.5
Nn4g23592 Nelumbo nucifera HOM05D003910 ORTHO05D004622 3.1e-176 622.1 422 74.9
Thecc.08G127500 Theobroma cacao HOM05D003910 ORTHO05D004622 3.1e-176 622.1 383 84.1
CANSAT25G1111 Cannabis sativa HOM05D003910 ORTHO05D004622 4.1e-176 621.7 431 75.6
Rhsim05G0148200 Rhododendron simsii HOM05D003910 ORTHO05D004622 4.1e-176 621.7 414 79.2
Lsat_1_v5_gn_8_141520 Lactuca sativa HOM05D003910 ORTHO05D004622 5.4e-176 621.3 420 78.1
Cpa.g.sc64.96 Carica papaya HOM05D003910 ORTHO05D004622 9.1e-176 620.5 408 78.7
PSO384G4520 Papaver somniferum HOM05D003910 ORTHO05D004622 9.1e-176 620.5 364 87.1
QL09p034136 Quercus lobata HOM05D003910 ORTHO05D004622 1.6e-175 619.8 408 82.4
AL2G28910 Arabidopsis lyrata HOM05D003910 ORTHO05D004622 2.0e-175 619.4 364 84.3
Carub.0002s1641 Capsella rubella HOM05D003910 ORTHO05D004622 2.0e-175 619.4 364 86.8
AUR62019066 Chenopodium quinoa HOM05D003910 ORTHO05D004622 2.0e-175 619.4 386 83.4
Migut.C01121 Erythranthe guttata HOM05D003910 ORTHO05D004622 2.0e-175 619.4 364 89.0
SGA_v2.0_scaffold52G18960 Striga asiatica HOM05D003910 ORTHO05D004622 2.0e-175 619.4 375 83.2
Thhalv10018595m.g Eutrema salsugineum HOM05D003910 ORTHO05D004622 2.7e-175 619.0 364 86.8
CARHR062800 Cardamine hirsuta HOM05D003910 ORTHO05D004622 3.5e-175 618.6 364 86.3
CiPaw.16G066200 Carya illinoinensis HOM05D003910 ORTHO05D004622 3.5e-175 618.6 400 79.0
Ciclev10001195m.g Citrus clementina HOM05D003910 ORTHO05D004622 3.5e-175 618.6 371 89.5
PSO339G3693 Papaver somniferum HOM05D003910 ORTHO05D004622 3.5e-175 618.6 364 86.8
Sabra05G0135000 Salix brachista HOM05D003910 ORTHO05D004622 5.9e-175 617.8 430 74.7
AUR62014326 Chenopodium quinoa HOM05D003910 ORTHO05D004622 1.0e-174 617.1 392 82.1
Atru.chr13.1495 Acer truncatum HOM05D003910 ORTHO05D004622 1.3e-174 616.7 436 77.8
CAN.G908.4 Capsicum annuum HOM05D003910 ORTHO05D004622 1.3e-174 616.7 363 83.5
Dinv07208 Davidia involucrata HOM05D003910 ORTHO05D004622 1.3e-174 616.7 364 84.9
THA.LOC104813147 Tarenaya hassleriana HOM05D003910 ORTHO05D004622 1.3e-174 616.7 364 84.9
AT1G69740 Arabidopsis thaliana HOM05D003910 ORTHO05D004622 1.7e-174 616.3 364 84.3
Sp5g24850 Schrenkiella parvula HOM05D003910 ORTHO05D004622 1.7e-174 616.3 364 85.2
COL.COLO4_24698 Corchorus olitorius HOM05D003910 ORTHO05D004622 2.9e-174 615.5 421 77.7
Gohir.D05G237801 Gossypium hirsutum HOM05D003910 ORTHO05D004622 2.9e-174 615.5 429 76.7
Gorai.009G246200 Gossypium raimondii HOM05D003910 ORTHO05D004622 2.9e-174 615.5 429 76.7
Duzib041G0414 Durio zibethinus HOM05D003910 ORTHO05D004622 5.0e-174 614.8 383 83.6
Nitab4.5_0000502g0120 Nicotiana tabacum HOM05D003910 ORTHO05D004622 6.5e-174 614.4 403 79.9
Aa31LG11G8660 Aethionema arabicum HOM05D003910 ORTHO05D004622 1.1e-173 613.6 363 83.2
Nitab4.5_0005516g0010 Nicotiana tabacum HOM05D003910 ORTHO05D004622 1.5e-173 613.2 364 86.0
Oeu028562.1 Olea europaea HOM05D003910 ORTHO05D004622 1.5e-173 613.2 320 93.1
BraA07t31189Z Brassica rapa HOM05D003910 ORTHO05D004622 4.2e-173 611.7 420 76.4
RcHm_v2.0_Chr6g0296081 Rosa chinensis HOM05D003910 ORTHO05D004622 5.5e-173 611.3 407 84.0
BcaB03g14749 Brassica carinata HOM05D003910 ORTHO05D004622 7.2e-173 610.9 420 75.5
FAN27G3176 Fragaria x ananassa HOM05D003910 ORTHO05D004622 7.2e-173 610.9 407 83.8
FAN20G2211 Fragaria x ananassa HOM05D003910 ORTHO05D004622 1.2e-172 610.1 407 83.8
Gohir.A05G235500 Gossypium hirsutum HOM05D003910 ORTHO05D004622 1.2e-172 610.1 429 76.0
FvH4_2g27170 Fragaria vesca HOM05D003910 ORTHO05D004622 3.6e-172 608.6 365 90.7
FAN24G0257 Fragaria x ananassa HOM05D003910 ORTHO05D004622 3.6e-172 608.6 365 90.7
CSS0022256 Camellia sinensis var. sinensis HOM05D003910 ORTHO05D004622 4.7e-172 608.2 431 73.3
C06p43500 Brassica napus HOM05D003910 ORTHO05D004622 6.1e-172 607.8 424 74.3
BolC6t39425H Brassica oleracea HOM05D003910 ORTHO05D004622 6.1e-172 607.8 424 74.3
Ah.15g093760 Amaranthus hybridus HOM05D003910 ORTHO05D004622 1.4e-171 606.7 320 92.5
BcaC08g46419 Brassica carinata HOM05D003910 ORTHO05D004622 2.3e-171 605.9 424 74.1
SalBow7G1186 Salvia bowleyana HOM05D003910 ORTHO05D004622 4.0e-171 605.1 391 80.1
A07p36130 Brassica napus HOM05D003910 ORTHO05D004622 1.5e-170 603.2 366 83.9
Hma1.2p1_0129F.1_g060300 Hydrangea macrophylla HOM05D003910 ORTHO05D004622 1.5e-170 603.2 398 81.9
EL10Ac1g01030 Beta vulgaris HOM05D003910 ORTHO05D004622 2.6e-170 602.4 377 83.8
FAN15G2864 Fragaria x ananassa HOM05D003910 ORTHO05D004622 2.6e-170 602.4 407 76.9
unitig_46.g18101 Utricularia gibba HOM05D003910 ORTHO05D004622 4.9e-169 598.2 320 90.6
CDE10G0179 Ceratophyllum demersum HOM05D003910 ORTHO05D004622 8.3e-169 597.4 408 74.3
Aqoxy3G03785 Aquilegia oxysepala HOM05D003910 ORTHO05D004622 5.9e-167 591.3 359 88.3
TPR.G35178 Trifolium pratense HOM05D003910 ORTHO05D004622 1.0e-163 580.5 448 75.9
MBI14_g21210_MAGBIO Magnolia biondii HOM05D003910 ORTHO05D004622 2.3e-163 579.3 314 89.2
arahy.Tifrunner.gnm1.ann1.LMC2LS Arachis hypogaea HOM05D003910 ORTHO05D004622 5.2e-163 578.2 429 76.9
arahy.Tifrunner.gnm1.ann1.YMC104 Arachis hypogaea HOM05D003910 ORTHO05D004622 5.2e-163 578.2 429 76.9
ATR0691G248 Amborella trichopoda HOM05D003910 ORTHO05D004622 1.7e-161 573.2 365 79.7
Zm00001eb227310 Zea mays HOM05D003910 ORTHO05D004622 8.3e-161 570.9 317 87.4
Duzib116G0657 Durio zibethinus HOM05D003910 ORTHO05D004622 4.1e-160 568.5 364 81.0
Os06g0704600 Oryza sativa ssp. japonica HOM05D003910 ORTHO05D004622 5.4e-160 568.2 317 87.1
AagrBONN_evm.TU.Sc2ySwM_117.3949 Anthoceros agrestis HOM05D003910 ORTHO05D004622 8.6e-158 560.8 358 77.9
SMO147G0120 Selaginella moellendorffii HOM05D003910 ORTHO05D004622 1.2e-156 557.0 363 74.9
MBI14_g37526_MAGBIO Magnolia biondii HOM05D003910 ORTHO05D004622 1.8e-155 553.1 413 75.5
HPP92_019462 Vanilla planifolia HOM05D003910 ORTHO05D004622 1.8e-155 553.1 365 77.3
Mapoly0065s0095 Marchantia polymorpha HOM05D003910 ORTHO05D004622 1.2e-154 550.4 358 74.6
Peaxi162Scf00288g00822 Petunia axillaris HOM05D003910 ORTHO05D004622 2.0e-154 549.7 364 80.2
Oeu059440.1 Olea europaea HOM05D003910 ORTHO05D004622 4.9e-153 545.0 364 81.6
Pp3c4_13690 Physcomitrium patens HOM05D003910 ORTHO05D004622 6.4e-153 544.7 358 74.3
Pp3c12_10600 Physcomitrium patens HOM05D003910 ORTHO05D004622 1.4e-152 543.5 367 73.0
SHI34070 Sapria himalayana HOM05D003910 ORTHO05D004622 7.0e-152 541.2 382 71.2
Aqoxy6G02874 Aquilegia oxysepala HOM05D003910 ORTHO05D004622 1.6e-151 540.0 364 73.6
PSO063G2338 Papaver somniferum HOM05D003910 ORTHO05D004622 1.3e-145 520.4 282 89.0
CDE10G1335 Ceratophyllum demersum HOM05D003910 ORTHO05D004622 3.2e-136 489.2 299 80.3
SEGI_23261 Sequoiadendron giganteum HOM05D003910 ORTHO05D004622 4.1e-136 488.8 309 78.3
CARHR035900 Cardamine hirsuta HOM05D003910 ORTHO05D004622 1.3e-134 483.8 318 73.9
Actinidia29473 Actinidia chinensis HOM05D003910 ORTHO05D004622 1.1e-133 480.7 365 71.8
Carub.0001s3515 Capsella rubella HOM05D003910 ORTHO05D004622 1.2e-132 477.2 320 72.8
Sp1g33510 Schrenkiella parvula HOM05D003910 ORTHO05D004622 3.6e-132 475.7 320 73.1
Thhalv10012213m.g Eutrema salsugineum HOM05D003910 ORTHO05D004622 6.2e-132 474.9 320 72.5
BcaB07g33952 Brassica carinata HOM05D003910 ORTHO05D004622 8.1e-132 474.6 320 72.2
AT1G44318 Arabidopsis thaliana HOM05D003910 ORTHO05D004622 4.0e-131 472.2 324 72.2
Glyma.06G115000 Glycine max HOM05D003910 ORTHO05D004622 5.8e-130 468.4 317 77.0
BcaC08g42844 Brassica carinata HOM05D003910 ORTHO05D004622 7.6e-130 468.0 318 72.3
C06p00600 Brassica napus HOM05D003910 ORTHO05D004622 7.6e-130 468.0 318 72.3
BolC6t35193H Brassica oleracea HOM05D003910 ORTHO05D004622 7.6e-130 468.0 318 72.3
AL1G52270 Arabidopsis lyrata HOM05D003910 ORTHO05D004622 1.3e-129 467.2 324 72.5
BraSC36t46049Z Brassica rapa HOM05D003910 ORTHO05D004622 5.4e-128 461.8 320 70.9
Sc16g0000040 Simmondsia chinensis HOM05D003910 ORTHO05D004622 7.1e-128 461.5 284 87.7
A10p07550 Brassica napus HOM05D003910 ORTHO05D004622 2.1e-127 459.9 320 70.6
MCO01G126 Micromonas commoda HOM05D003910 ORTHO05D004622 8.1e-116 421.4 323 63.2
Cre02.g091050 Chlamydomonas reinhardtii HOM05D003910 ORTHO05D004622 2.4e-115 419.9 328 61.3
PRCOL_00003407 Prasinoderma coloniale HOM05D003910 ORTHO05D004622 4.0e-115 419.1 312 65.7
Aa31LG6G9390 Aethionema arabicum HOM05D003910 ORTHO05D004622 3.8e-113 412.5 284 72.5
PSO782G2793 Papaver somniferum HOM05D003910 ORTHO05D004622 5.1e-110 402.1 257 80.9
Atru.chr12.1381 Acer truncatum HOM05D003910 ORTHO05D004622 4.8e-108 395.6 224 87.1
SGA_v2.0_scaffold24G10456 Striga asiatica HOM05D003910 ORTHO05D004622 2.2e-97 360.1 255 75.7
CSS0027293 Camellia sinensis var. sinensis HOM05D003910 ORTHO05D004622 7.9e-95 351.7 350 58.6
Psat4g053280 Pisum sativum HOM05D003910 ORTHO05D004622 1.1e-93 347.8 267 73.8
Aa31sc95G130 Aethionema arabicum HOM05D003910 ORTHO05D004622 7.0e-75 285.4 234 64.1
Actinidia03462 Actinidia chinensis HOM05D003910 ORTHO05D004622 1.5e-69 267.7 185 73.0
CBR_g49534 Chara braunii HOM05D003910 ORTHO05D000048 1.1e-67 261.5 249 57.4
Haze_27031 Corylus avellana HOM05D003910 ORTHO05D004622 8.3e-60 235.3 270 47.4
Psat0s476g0040 Pisum sativum HOM05D003910 ORTHO05D004622 2.5e-56 223.8 123 86.2
Cfa022049 Carpinus fangiana HOM05D003910 ORTHO05D004622 3.5e-50 203.4 303 39.6
Nn3g17592 Nelumbo nucifera HOM05D003910 ORTHO05D004622 5.0e-49 199.5 177 59.3
arahy.Tifrunner.gnm1.ann1.875P1G Arachis hypogaea HOM05D003910 ORTHO05D004622 6.8e-46 189.1 187 55.6
BcaB06g27098 Brassica carinata HOM05D003910 ORTHO05D004622 8.9e-46 188.7 101 86.1
Aa31sc107G70 Aethionema arabicum HOM05D003910 ORTHO05D004622 1.2e-45 188.3 148 66.2
Psat4g053240 Pisum sativum HOM05D003910 ORTHO05D004622 1.3e-44 184.9 104 87.5
arahy.Tifrunner.gnm1.ann1.YZW1CW Arachis hypogaea HOM05D003910 ORTHO05D004622 6.4e-44 182.6 187 54.5
BcaB05g22163 Brassica carinata HOM05D003910 ORTHO05D004622 8.3e-44 182.2 101 83.2
Nn4g23594 Nelumbo nucifera HOM05D003910 ORTHO05D004622 8.3e-44 182.2 100 89.0
BcaB04g19319 Brassica carinata HOM05D003910 ORTHO05D004622 1.2e-39 168.3 100 79.0
arahy.Tifrunner.gnm1.ann1.MAXD3F Arachis hypogaea HOM05D003910 ORTHO05D004622 2.1e-39 167.5 150 58.7
TPR.G20499 Trifolium pratense HOM05D003910 ORTHO05D004622 1.3e-36 158.3 122 69.7
Oeu059446.1 Olea europaea HOM05D003910 ORTHO05D004622 3.7e-36 156.8 77 90.9
arahy.Tifrunner.gnm1.ann1.I497ZX Arachis hypogaea HOM05D003910 ORTHO05D004622 1.1e-35 155.2 183 48.1
Haze_27000 Corylus avellana HOM05D003910 ORTHO05D004622 1.4e-35 154.8 212 40.1
arahy.Tifrunner.gnm1.ann1.KLV74S Arachis hypogaea HOM05D003910 ORTHO05D004622 2.1e-34 151.0 183 48.1
TAR622G0657 Trochodendron aralioides HOM05D003910 ORTHO05D004622 1.0e-33 148.7 135 60.7
arahy.Tifrunner.gnm1.ann1.FDSF2K Arachis hypogaea HOM05D003910 ORTHO05D004622 3.9e-33 146.7 176 56.8
SpUn0247_0040 Schrenkiella parvula HOM05D003910 ORTHO05D004622 3.9e-33 146.7 76 85.5
Actinidia03463 Actinidia chinensis HOM05D003910 ORTHO05D004622 1.1e-27 128.6 72 88.9
Psat1g078960 Pisum sativum HOM05D003910 ORTHO05D004622 1.2e-23 115.2 123 59.3
Psat1g079000 Pisum sativum HOM05D003910 ORTHO05D004622 1.2e-23 115.2 123 59.3
TAR371G0308 Trochodendron aralioides HOM05D003910 ORTHO05D004622 4.7e-23 113.2 74 75.7
Lsat_1_v5_gn_8_139480 Lactuca sativa HOM05D003910 ORTHO05D004420 3.8e-20 103.6 106 53.8
Psat5g087760 Pisum sativum HOM05D003910 ORTHO05D004622 5.1e-17 93.2 65 75.4
Aa31sc107G60 Aethionema arabicum HOM05D003910 ORTHO05D059684 5.8e-13 79.7 49 79.6
Psat1g013080 Pisum sativum HOM05D003910 ORTHO05D323649 9.9e-13 79.0 65 67.7
SEGI_40510 Sequoiadendron giganteum HOM05D003910 ORTHO05D004622 2.2e-12 77.8 50 72.0
arahy.Tifrunner.gnm1.ann1.ZWJ939 Arachis hypogaea HOM05D000074 ORTHO05D004622 2.1e-10 71.2 70 54.3
Nn3g17591 Nelumbo nucifera HOM05D003910 ORTHO05D004622 1.7e-09 68.2 36 91.7
Lsat_1_v5_gn_8_143861 Lactuca sativa HOM05D003910 ORTHO05D004622 2.5e-08 64.3 45 73.3


User provided reference genes

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