Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G15998 Trifolium pratense HOM05D000168 ORTHO05D001942 3.2e-76 288.9 211 100.0
TPR.G16020 Trifolium pratense HOM05D000168 ORTHO05D001942 3.0e-34 149.4 106 81.1
Medtr3g087060 Medicago truncatula HOM05D000168 ORTHO05D001942 3.4e-30 136.0 107 73.8
Psat5g090440 Pisum sativum HOM05D000168 ORTHO05D001942 3.8e-29 132.5 106 72.6
Lj6g0018380 Lotus japonicus HOM05D000168 ORTHO05D001942 9.4e-28 127.9 106 73.6
Glyma.18G016400 Glycine max HOM05D000168 ORTHO05D001942 2.7e-19 99.8 100 62.0
Glyma.11G240900 Glycine max HOM05D000168 ORTHO05D001942 8.0e-19 98.2 100 60.0
Phvul.001G252800 Phaseolus vulgaris HOM05D000168 ORTHO05D001942 2.3e-18 96.7 96 60.4
VMungo1383G1478 Vigna mungo HOM05D000168 ORTHO05D001942 5.2e-18 95.5 101 60.4
Glyma.05G177500 Glycine max HOM05D000168 ORTHO05D001942 1.7e-16 90.5 105 56.2
Glyma.08G134600 Glycine max HOM05D000168 ORTHO05D001942 1.7e-16 90.5 105 56.2
Lalb_Chr07g0185211 Lupinus albus HOM05D000168 ORTHO05D001942 1.7e-16 90.5 105 57.1
CsaV3_4G004550 Cucumis sativus L. HOM05D000168 ORTHO05D001942 2.2e-16 90.1 114 51.8
CsaV3_UNG116960 Cucumis sativus L. HOM05D000168 ORTHO05D001942 2.2e-16 90.1 114 51.8
CsaV3_UNG223630 Cucumis sativus L. HOM05D000168 ORTHO05D001942 2.2e-16 90.1 114 51.8
VMungo0251G3677 Vigna mungo HOM05D000168 ORTHO05D001942 6.3e-16 88.6 105 54.3
TPR.G6247 Trifolium pratense HOM05D000168 ORTHO05D001942 1.4e-15 87.4 108 53.7
arahy.Tifrunner.gnm1.ann1.0F5MQQ Arachis hypogaea HOM05D000168 ORTHO05D001942 3.1e-15 86.3 101 55.4
FvH4_1g20640 Fragaria vesca HOM05D000168 ORTHO05D001942 3.1e-15 86.3 105 53.3
FAN19G1276 Fragaria x ananassa HOM05D000168 ORTHO05D001942 3.1e-15 86.3 105 53.3
Phvul.002G257000 Phaseolus vulgaris HOM05D000168 ORTHO05D001942 5.3e-15 85.5 104 53.8
MD15G1323000 Malus domestica HOM05D000168 ORTHO05D001942 7.0e-15 85.1 105 53.3
Eucgr.H04770 Eucalyptus grandis HOM05D000168 ORTHO05D001942 9.1e-15 84.7 96 55.2
FAN26G2176 Fragaria x ananassa HOM05D000168 ORTHO05D001942 9.1e-15 84.7 105 52.4
Lalb_Chr11g0075411 Lupinus albus HOM05D000168 ORTHO05D001942 9.1e-15 84.7 107 53.3
FAN23G0112 Fragaria x ananassa HOM05D000168 ORTHO05D001942 1.6e-14 84.0 105 51.4
FAN23G0372 Fragaria x ananassa HOM05D000168 ORTHO05D001942 1.6e-14 84.0 105 51.4
Lalb_Chr12g0203911 Lupinus albus HOM05D000168 ORTHO05D001942 2.0e-14 83.6 101 54.5
FAN28G1671 Fragaria x ananassa HOM05D000168 ORTHO05D001942 3.5e-14 82.8 105 51.4
HanXRQChr15g0487321 Helianthus annuus HOM05D000168 ORTHO05D001942 5.9e-14 82.0 111 47.7
Potri.005G074200 Populus trichocarpa HOM05D000168 ORTHO05D001942 5.9e-14 82.0 108 48.1
Prupe.6G189000 Prunus persica HOM05D000168 ORTHO05D001942 7.7e-14 81.6 97 51.5
CAN.G1177.6 Capsicum annuum HOM05D000168 ORTHO05D001942 2.2e-13 80.1 98 51.0
RcHm_v2.0_Chr2g0113091 Rosa chinensis HOM05D000168 ORTHO05D001942 2.2e-13 80.1 105 49.5
ClCG07G017340 Citrullus lanatus HOM05D000168 ORTHO05D001942 2.9e-13 79.7 110 49.1
Lsat_1_v5_gn_5_34601 Lactuca sativa HOM05D000168 ORTHO05D001942 3.8e-13 79.3 111 45.9
Actinidia28858 Actinidia chinensis HOM05D000168 ORTHO05D001942 5.0e-13 79.0 109 46.8
Medtr8g090140 Medicago truncatula HOM05D000168 ORTHO05D001942 5.0e-13 79.0 101 54.5
Nitab4.5_0003662g0010 Nicotiana tabacum HOM05D000168 ORTHO05D001942 5.0e-13 79.0 106 45.3
arahy.Tifrunner.gnm1.ann1.61PLD2 Arachis hypogaea HOM05D000168 ORTHO05D001942 6.5e-13 78.6 96 52.1
Lj4g0014693 Lotus japonicus HOM05D000168 ORTHO05D001942 8.5e-13 78.2 102 53.9
TWI74G0394 Tripterygium wilfordii HOM05D000168 ORTHO05D001942 8.5e-13 78.2 94 54.3
Ca_30099_v3 Cicer arietinum L. HOM05D000168 ORTHO05D001942 1.1e-12 77.8 101 50.5
TWI77G0576 Tripterygium wilfordii HOM05D000168 ORTHO05D001942 1.1e-12 77.8 97 55.7
MBI02_g35752_MAGBIO Magnolia biondii HOM05D000168 ORTHO05D001942 1.5e-12 77.4 106 47.2
arahy.Tifrunner.gnm1.ann1.0E4EG2 Arachis hypogaea HOM05D000168 ORTHO05D001942 1.9e-12 77.0 78 55.1
CsaV3_UNG160230 Cucumis sativus L. HOM05D000168 ORTHO05D001942 3.2e-12 76.3 90 52.2
Ca_17745_v3 Cicer arietinum L. HOM05D000168 ORTHO05D001942 5.5e-12 75.5 80 55.0
Sc03g0002010 Simmondsia chinensis HOM05D000168 ORTHO05D001942 5.5e-12 75.5 96 50.0
ECA247G2673 Erigeron canadensis HOM05D000168 ORTHO05D001942 7.2e-12 75.1 111 41.4
Thhalv10003847m.g Eutrema salsugineum HOM05D000168 ORTHO05D001942 7.2e-12 75.1 110 44.5
Rhsim08G0011300 Rhododendron simsii HOM05D000168 ORTHO05D001942 9.4e-12 74.7 107 47.7
Zm00001eb054260 Zea mays HOM05D000168 ORTHO05D001942 9.4e-12 74.7 102 46.1
Psat7g055880 Pisum sativum HOM05D000168 ORTHO05D001942 1.2e-11 74.3 103 51.5
Haze_24902 Corylus avellana HOM05D000168 ORTHO05D001942 1.6e-11 73.9 100 51.0
Nitab4.5_0004390g0070 Nicotiana tabacum HOM05D000168 ORTHO05D001942 1.6e-11 73.9 93 49.5
CiPaw.03G143100 Carya illinoinensis HOM05D000168 ORTHO05D001942 2.1e-11 73.6 104 49.0
Duzib147G0665 Durio zibethinus HOM05D000168 ORTHO05D001942 2.7e-11 73.2 93 48.4
TAR381G0909 Trochodendron aralioides HOM05D000168 ORTHO05D001942 2.7e-11 73.2 97 47.4
AUR62003809 Chenopodium quinoa HOM05D000168 ORTHO05D001942 4.7e-11 72.4 96 45.8
Dinv13202 Davidia involucrata HOM05D000168 ORTHO05D001942 4.7e-11 72.4 103 48.5
MD01G1032200 Malus domestica HOM05D000168 ORTHO05D001942 4.7e-11 72.4 100 49.0
MSTRG.2572 Avicennia marina HOM05D000168 ORTHO05D001942 6.1e-11 72.0 105 45.7
Os02g0283800 Oryza sativa ssp. japonica HOM05D000168 ORTHO05D001942 6.1e-11 72.0 95 46.3
TAR628G1635 Trochodendron aralioides HOM05D000168 ORTHO05D001942 6.1e-11 72.0 93 49.5
Sp2g28340 Schrenkiella parvula HOM05D000168 ORTHO05D001942 8.0e-11 71.6 103 41.7
GSVIVG01006038001 Vitis vinifera HOM05D000168 ORTHO05D001942 8.0e-11 71.6 96 49.0
AT5G65240 Arabidopsis thaliana HOM05D000168 ORTHO05D001942 1.0e-10 71.2 110 42.7
CANSAT01G1112 Cannabis sativa HOM05D000168 ORTHO05D001942 1.0e-10 71.2 100 49.0
Solyc11g008960.3 Solanum lycopersicum HOM05D000168 ORTHO05D001942 1.0e-10 71.2 94 48.9
CARHR279190 Cardamine hirsuta HOM05D000168 ORTHO05D001942 1.4e-10 70.9 103 42.7
Gorai.007G060500 Gossypium raimondii HOM05D000168 ORTHO05D001942 1.4e-10 70.9 95 45.3
Nn5g30087 Nelumbo nucifera HOM05D000168 ORTHO05D001942 1.4e-10 70.9 100 47.0
Peaxi162Scf00383g00311 Petunia axillaris HOM05D000168 ORTHO05D001942 1.4e-10 70.9 89 48.3
PGSC0003DMG400021789 Solanum tuberosum HOM05D000168 ORTHO05D001942 1.4e-10 70.9 98 44.9
Atru.chr4.21 Acer truncatum HOM05D000168 ORTHO05D001942 1.8e-10 70.5 102 46.1
ATR0782G152 Amborella trichopoda HOM05D000168 ORTHO05D001942 1.8e-10 70.5 106 48.1
Thecc.01G099300 Theobroma cacao HOM05D000168 ORTHO05D001942 2.3e-10 70.1 93 48.4
PSO541G0647 Papaver somniferum HOM05D000168 ORTHO05D001942 3.0e-10 69.7 97 46.4
Rhsim08G0011400 Rhododendron simsii HOM05D000168 ORTHO05D001942 4.0e-10 69.3 108 47.2
Cfa002635 Carpinus fangiana HOM05D000168 ORTHO05D001942 5.2e-10 68.9 96 50.0
Aqoxy6G00770_Aqoxy6G00772 Aquilegia oxysepala HOM05D000168 ORTHO05D001942 6.8e-10 68.6 100 48.0
Sed0001447 Sechium edule HOM05D000168 ORTHO05D001942 6.8e-10 68.6 107 45.8
vmacro18593 Vaccinium macrocarpon HOM05D000168 ORTHO05D001942 6.8e-10 68.6 107 47.7
MELO3C017610.2 Cucumis melo HOM05D000168 ORTHO05D001942 8.8e-10 68.2 111 40.5
Solyc03g078520.4 Solanum lycopersicum HOM05D000168 ORTHO05D001942 8.8e-10 68.2 101 44.6
Sopen03g021400 Solanum pennellii HOM05D000168 ORTHO05D001942 8.8e-10 68.2 101 44.6
PGSC0003DMG400016164 Solanum tuberosum HOM05D000168 ORTHO05D001942 8.8e-10 68.2 94 47.9
BcaC01g02760 Brassica carinata HOM05D000168 ORTHO05D001942 1.2e-09 67.8 100 44.0
C03p60840 Brassica napus HOM05D000168 ORTHO05D001942 1.2e-09 67.8 100 44.0
BolC3t18341H Brassica oleracea HOM05D000168 ORTHO05D001942 1.2e-09 67.8 100 44.0
Migut.L00144 Erythranthe guttata HOM05D000168 ORTHO05D001942 1.2e-09 67.8 103 44.7
SGA_v2.0_scaffold335G49116 Striga asiatica HOM05D000168 ORTHO05D001942 1.2e-09 67.8 77 49.4
AL8G42790 Arabidopsis lyrata HOM05D000168 ORTHO05D001942 1.5e-09 67.4 109 41.3
Duzib264G0839 Durio zibethinus HOM05D000168 ORTHO05D001942 1.5e-09 67.4 98 44.9
Gohir.D11G055200 Gossypium hirsutum HOM05D000168 ORTHO05D001942 1.5e-09 67.4 95 43.2
Aa31LG1G16720 Aethionema arabicum HOM05D000168 ORTHO05D001942 2.6e-09 66.6 105 41.9
CSS0040183 Camellia sinensis var. sinensis HOM05D000168 ORTHO05D001942 2.6e-09 66.6 98 49.0
Potri.007G094500 Populus trichocarpa HOM05D000168 ORTHO05D001942 2.6e-09 66.6 100 47.0
PGR102G2682 Punica granatum HOM05D000168 ORTHO05D001942 2.6e-09 66.6 93 45.2
Aa31LG3G16860 Aethionema arabicum HOM05D000168 ORTHO05D001942 3.4e-09 66.2 98 43.9
BcaB02g09888 Brassica carinata HOM05D000168 ORTHO05D001942 3.4e-09 66.2 108 41.7
AUR62001993 Chenopodium quinoa HOM05D000168 ORTHO05D001942 3.4e-09 66.2 92 44.6
MD15G1322900 Malus domestica HOM05D000168 ORTHO05D001942 3.4e-09 66.2 97 46.4
SGA_v2.0_scaffold335G49118 Striga asiatica HOM05D000168 ORTHO05D001942 3.4e-09 66.2 77 48.1
CAN.G233.1 Capsicum annuum HOM05D000168 ORTHO05D001942 4.4e-09 65.9 93 44.1
Actinidia28239 Actinidia chinensis HOM05D000168 ORTHO05D001942 7.5e-09 65.1 113 45.1
Carub.0008s2611 Capsella rubella HOM05D000168 ORTHO05D001942 7.5e-09 65.1 102 41.2
Migut.H02351 Erythranthe guttata HOM05D000168 ORTHO05D001942 9.8e-09 64.7 65 55.4
Lj4C896T7 Lonicera japonica HOM05D000168 ORTHO05D001942 9.8e-09 64.7 101 44.6
A06p32090 Brassica napus HOM05D000168 ORTHO05D001942 1.3e-08 64.3 112 41.1
BraA06t26138Z Brassica rapa HOM05D000168 ORTHO05D001942 1.3e-08 64.3 112 41.1
CiPaw.04G101100 Carya illinoinensis HOM05D000168 ORTHO05D001942 1.3e-08 64.3 98 50.0
Nitab4.5_0000897g0080 Nicotiana tabacum HOM05D000168 ORTHO05D001942 1.3e-08 64.3 75 49.3
Cc07_g15010 Coffea canephora HOM05D000168 ORTHO05D001942 1.7e-08 63.9 69 53.6
Gohir.D03G037900 Gossypium hirsutum HOM05D000168 ORTHO05D001942 1.7e-08 63.9 109 41.3
Nitab4.5_0009796g0050 Nicotiana tabacum HOM05D000168 ORTHO05D001942 1.7e-08 63.9 70 50.0
PSO781G0060 Papaver somniferum HOM05D000168 ORTHO05D001942 1.7e-08 63.9 105 42.9
Zm00001eb237190 Zea mays HOM05D000168 ORTHO05D001942 1.7e-08 63.9 78 47.4
BcaC03g13305 Brassica carinata HOM05D000168 ORTHO05D001942 2.2e-08 63.5 102 40.2
Lj2C545G1 Lonicera japonica HOM05D000168 ORTHO05D001942 2.2e-08 63.5 70 50.0
Sabra05G0060900 Salix brachista HOM05D000168 ORTHO05D001942 2.2e-08 63.5 100 46.0
Ah.02g122610 Amaranthus hybridus HOM05D000168 ORTHO05D001942 3.7e-08 62.8 72 50.0
HPP92_019308 Vanilla planifolia HOM05D000168 ORTHO05D001942 3.7e-08 62.8 104 42.3
Haze_24905 Corylus avellana HOM05D000168 ORTHO05D001942 4.8e-08 62.4 106 42.5
Nn1g05373 Nelumbo nucifera HOM05D000168 ORTHO05D001942 4.8e-08 62.4 96 44.8
Os03g0703200 Oryza sativa ssp. japonica HOM05D000168 ORTHO05D001942 4.8e-08 62.4 76 47.4
THA.LOC104801711 Tarenaya hassleriana HOM05D000168 ORTHO05D001942 4.8e-08 62.4 91 45.1
DCAR_003490 Daucus carota HOM05D000168 ORTHO05D001942 6.3e-08 62.0 93 40.9
CARHR203010 Cardamine hirsuta HOM05D000168 ORTHO05D001942 1.1e-07 61.2 96 43.8
Sabra07G0078100 Salix brachista HOM05D000168 ORTHO05D001942 1.1e-07 61.2 100 43.0
AL6G20790 Arabidopsis lyrata HOM05D000168 ORTHO05D001942 1.4e-07 60.8 86 45.3
Oeu015886.1 Olea europaea HOM05D000168 ORTHO05D001942 1.4e-07 60.8 122 41.8
Peaxi162Scf00611g00018 Petunia axillaris HOM05D000168 ORTHO05D001942 1.4e-07 60.8 83 43.4
COL.COLO4_27267 Corchorus olitorius HOM05D000168 ORTHO05D001942 1.8e-07 60.5 70 51.4
Gorai.007G236500 Gossypium raimondii HOM05D000168 ORTHO05D001942 1.8e-07 60.5 69 52.2
Manes.13G094300 Manihot esculenta HOM05D000168 ORTHO05D001942 1.8e-07 60.5 97 43.3
Thhalv10013001m.g Eutrema salsugineum HOM05D000168 ORTHO05D001942 2.4e-07 60.1 96 43.8
Gohir.D11G220400 Gossypium hirsutum HOM05D000168 ORTHO05D001942 2.4e-07 60.1 73 49.3
SalBow3G4218 Salvia bowleyana HOM05D000168 ORTHO05D001942 2.4e-07 60.1 95 43.2
GSVIVG01002369001 Vitis vinifera HOM05D000168 ORTHO05D001942 2.4e-07 60.1 92 43.5
AT5G10290 Arabidopsis thaliana HOM05D000168 ORTHO05D001942 3.1e-07 59.7 86 45.3
Ciclev10027400m.g Citrus clementina HOM05D000168 ORTHO05D001942 4.1e-07 59.3 96 42.7
CSS0034186 Camellia sinensis var. sinensis HOM05D000168 ORTHO05D001942 5.4e-07 58.9 111 41.4
BcaB05g21477 Brassica carinata HOM05D000168 ORTHO05D001942 7.0e-07 58.5 88 44.3
C02p04360 Brassica napus HOM05D000168 ORTHO05D001942 7.0e-07 58.5 88 44.3
BolC2t06400H Brassica oleracea HOM05D000168 ORTHO05D001942 7.0e-07 58.5 88 44.3
Cfa002639 Carpinus fangiana HOM05D000168 ORTHO05D001942 7.0e-07 58.5 105 40.0
Gohir.A11G202700 Gossypium hirsutum HOM05D000168 ORTHO05D001942 7.0e-07 58.5 69 50.7
Carub.0006s0875 Capsella rubella HOM05D000168 ORTHO05D001942 1.2e-06 57.8 90 43.3
CsaV3_4G004560 Cucumis sativus L. HOM05D000168 ORTHO05D001942 1.2e-06 57.8 103 39.8
CsaV3_UNG118960 Cucumis sativus L. HOM05D000168 ORTHO05D001942 1.2e-06 57.8 103 39.8
CsaV3_UNG160210 Cucumis sativus L. HOM05D000168 ORTHO05D001942 1.2e-06 57.8 103 39.8
CsaV3_UNG223610 Cucumis sativus L. HOM05D000168 ORTHO05D001942 1.2e-06 57.8 103 39.8
A02p00420 Brassica napus HOM05D000168 ORTHO05D001942 1.6e-06 57.4 88 43.2
BraA02t05026Z Brassica rapa HOM05D000168 ORTHO05D001942 2.0e-06 57.0 88 43.2
THA.LOC104798902 Tarenaya hassleriana HOM05D000168 ORTHO05D001942 2.0e-06 57.0 97 41.2
QL06p049054 Quercus lobata HOM05D000168 ORTHO05D001942 2.7e-06 56.6 87 44.8
CSS0002072 Camellia sinensis var. sinensis HOM05D000168 ORTHO05D001942 3.5e-06 56.2 96 46.9
EL10Ac6g15120 Beta vulgaris HOM05D000168 ORTHO05D001942 4.5e-06 55.8 78 44.9
MELO3C017611.2 Cucumis melo HOM05D000168 ORTHO05D001942 4.5e-06 55.8 112 40.2
Ah.03g143800 Amaranthus hybridus HOM05D000168 ORTHO05D001942 5.9e-06 55.5 75 42.7
Gohir.A02G142500 Gossypium hirsutum HOM05D000168 ORTHO05D001942 7.7e-06 55.1 69 47.8


User provided reference genes

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