Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G15988 Trifolium pratense HOM05D003648 ORTHO05D004267 5.6e-122 441.0 235 100.0
Medtr1g054175 Medicago truncatula HOM05D003648 ORTHO05D004267 2.6e-79 299.3 235 69.4
CiPaw.09G029700 Carya illinoinensis HOM05D003648 ORTHO05D004267 9.1e-48 194.5 250 52.0
Manes.08G043500 Manihot esculenta HOM05D003648 ORTHO05D004267 1.6e-47 193.7 254 50.4
RcHm_v2.0_Chr3g0479411 Rosa chinensis HOM05D003648 ORTHO05D004267 2.6e-47 193.0 265 50.2
VMungo0720G1699 Vigna mungo HOM05D003648 ORTHO05D004267 1.5e-45 187.2 272 46.7
Phvul.007G260600 Phaseolus vulgaris HOM05D003648 ORTHO05D004267 2.5e-45 186.4 251 49.8
Potri.016G058100 Populus trichocarpa HOM05D003648 ORTHO05D004267 2.5e-45 186.4 246 49.2
Glyma.09G110100 Glycine max HOM05D003648 ORTHO05D004267 5.5e-45 185.3 278 48.9
FAN14G0601 Fragaria x ananassa HOM05D003648 ORTHO05D004267 2.7e-44 183.0 269 47.2
Lj1g0001044 Lotus japonicus HOM05D003648 ORTHO05D004267 2.7e-44 183.0 253 47.4
Thecc.05G173300 Theobroma cacao HOM05D003648 ORTHO05D004267 4.7e-44 182.2 266 46.2
FAN02G2154 Fragaria x ananassa HOM05D003648 ORTHO05D004267 1.0e-43 181.0 269 46.8
TPR.G18228 Trifolium pratense HOM05D003648 ORTHO05D004267 4.0e-43 179.1 244 50.4
FvH4_6g22070 Fragaria vesca HOM05D003648 ORTHO05D004267 6.7e-43 178.3 270 47.0
FAN05G4067 Fragaria x ananassa HOM05D003648 ORTHO05D004267 6.7e-43 178.3 269 46.5
Potri.006G193300 Populus trichocarpa HOM05D003648 ORTHO05D004267 8.8e-43 177.9 247 47.4
Sabra16G0061500 Salix brachista HOM05D003648 ORTHO05D004267 8.8e-43 177.9 255 48.2
QL07p024078 Quercus lobata HOM05D003648 ORTHO05D004267 1.7e-41 173.7 273 46.9
FAN09G0401 Fragaria x ananassa HOM05D003648 ORTHO05D004267 2.2e-41 173.3 266 46.6
Glyma.02G171900 Glycine max HOM05D003648 ORTHO05D004267 2.2e-41 173.3 257 49.4
Glyma.03G145500 Glycine max HOM05D003648 ORTHO05D004267 2.8e-41 172.9 261 48.3
Duzib093G1879 Durio zibethinus HOM05D003648 ORTHO05D004267 3.7e-41 172.6 271 43.9
Potri.006G193500 Populus trichocarpa HOM05D003648 ORTHO05D004267 6.3e-41 171.8 269 45.7
Glyma.19G148700 Glycine max HOM05D003648 ORTHO05D004267 1.4e-40 170.6 265 45.7
Lalb_Chr18g0047921 Lupinus albus HOM05D003648 ORTHO05D004267 1.4e-40 170.6 259 48.6
CiPaw.10G026000 Carya illinoinensis HOM05D003648 ORTHO05D004267 3.1e-40 169.5 263 46.8
Sabra16G0061400 Salix brachista HOM05D003648 ORTHO05D004267 4.1e-40 169.1 260 45.4
Lalb_Chr18g0047911 Lupinus albus HOM05D003648 ORTHO05D004267 5.3e-40 168.7 269 46.1
Potri.016G058000 Populus trichocarpa HOM05D003648 ORTHO05D004267 5.3e-40 168.7 249 47.0
Cfa020157 Carpinus fangiana HOM05D003648 ORTHO05D004267 2.7e-39 166.4 256 45.3
Sabra06G0148400 Salix brachista HOM05D003648 ORTHO05D004267 2.7e-39 166.4 248 46.0
Haze_20003 Corylus avellana HOM05D003648 ORTHO05D004267 5.9e-39 165.2 269 44.6
arahy.Tifrunner.gnm1.ann1.SE7UXR Arachis hypogaea HOM05D003648 ORTHO05D004267 7.7e-39 164.9 305 39.0
VMungo1383G3335 Vigna mungo HOM05D003648 ORTHO05D004267 1.3e-38 164.1 250 45.6
TWI53G1880 Tripterygium wilfordii HOM05D003648 ORTHO05D004267 2.9e-38 162.9 233 48.9
Manes.08G043600 Manihot esculenta HOM05D003648 ORTHO05D004267 3.2e-37 159.5 247 45.3
Phvul.001G143000 Phaseolus vulgaris HOM05D003648 ORTHO05D004267 3.2e-37 159.5 254 45.7
COL.COLO4_29331 Corchorus olitorius HOM05D003648 ORTHO05D004267 4.2e-37 159.1 289 43.6
Prupe.7G079000 Prunus persica HOM05D003648 ORTHO05D004267 7.2e-37 158.3 290 43.8
TWI77G0250 Tripterygium wilfordii HOM05D003648 ORTHO05D004267 9.4e-37 157.9 229 47.6
CSS0001516 Camellia sinensis var. sinensis HOM05D003648 ORTHO05D004267 2.1e-36 156.8 276 40.2
arahy.Tifrunner.gnm1.ann1.AL1Y46 Arachis hypogaea HOM05D003648 ORTHO05D004267 2.7e-36 156.4 301 38.9
Medtr7g093360 Medicago truncatula HOM05D003648 ORTHO05D004267 1.4e-35 154.1 244 45.9
Haze_20001 Corylus avellana HOM05D003648 ORTHO05D004267 1.8e-35 153.7 210 48.6
Sed0001893 Sechium edule HOM05D003648 ORTHO05D004267 2.3e-35 153.3 227 47.1
Manes.09G036200 Manihot esculenta HOM05D003648 ORTHO05D004267 3.0e-35 152.9 237 44.3
Atru.chr8.1128 Acer truncatum HOM05D003648 ORTHO05D004267 4.0e-35 152.5 253 45.1
MELO3C009616.2 Cucumis melo HOM05D003648 ORTHO05D004267 4.0e-35 152.5 195 52.8
Duzib128G0816 Durio zibethinus HOM05D003648 ORTHO05D004267 5.2e-35 152.1 280 41.4
MD12G1056100 Malus domestica HOM05D003648 ORTHO05D004267 5.2e-35 152.1 281 40.6
Lj5g0018704 Lotus japonicus HOM05D003648 ORTHO05D004267 6.8e-35 151.8 249 46.6
CsaV3_3G038720 Cucumis sativus L. HOM05D003648 ORTHO05D004267 1.2e-34 151.0 227 48.0
Gohir.A01G137604 Gossypium hirsutum HOM05D003648 ORTHO05D004267 1.5e-34 150.6 233 45.9
Medtr7g093350 Medicago truncatula HOM05D003648 ORTHO05D004267 2.0e-34 150.2 243 45.3
Cc06_g15770 Coffea canephora HOM05D003648 ORTHO05D004267 5.7e-34 148.7 165 52.7
Gohir.A04G053800 Gossypium hirsutum HOM05D003648 ORTHO05D004267 1.7e-33 147.1 266 43.2
Gohir.D04G089900 Gossypium hirsutum HOM05D003648 ORTHO05D004267 1.7e-33 147.1 265 42.6
MD14G1055800 Malus domestica HOM05D003648 ORTHO05D004267 4.8e-33 145.6 264 41.3
Peaxi162Scf00480g00036 Petunia axillaris HOM05D003648 ORTHO05D004267 6.3e-33 145.2 242 43.0
Nn2g15698 Nelumbo nucifera HOM05D003648 ORTHO05D004267 3.1e-32 142.9 251 42.6
Actinidia22042 Actinidia chinensis HOM05D003648 ORTHO05D004267 4.1e-32 142.5 233 45.1
Cpa.g.sc85.54 Carica papaya HOM05D003648 ORTHO05D004267 7.0e-32 141.7 255 43.9
Sabra06G0148600 Salix brachista HOM05D003648 ORTHO05D004267 2.0e-31 140.2 240 41.7
Gorai.012G100300 Gossypium raimondii HOM05D003648 ORTHO05D004267 5.9e-31 138.7 254 42.1
Nitab4.5_0003600g0010 Nicotiana tabacum HOM05D003648 ORTHO05D004267 1.3e-30 137.5 195 46.7
Eucgr.A02456 Eucalyptus grandis HOM05D003648 ORTHO05D004267 1.7e-30 137.1 259 40.2
Gohir.1Z049549 Gossypium hirsutum HOM05D003648 ORTHO05D004267 5.0e-30 135.6 205 43.9
MSTRG.19911 Avicennia marina HOM05D003648 ORTHO05D004267 6.5e-30 135.2 220 42.7
Gohir.D01G125600 Gossypium hirsutum HOM05D003648 ORTHO05D004267 6.5e-30 135.2 231 42.9
Gorai.002G156300 Gossypium raimondii HOM05D003648 ORTHO05D004267 6.5e-30 135.2 231 42.9
Hma1.2p1_0431F.1_g151600 Hydrangea macrophylla HOM05D003648 ORTHO05D004267 6.5e-30 135.2 241 41.5
MSTRG.6486 Avicennia marina HOM05D003648 ORTHO05D004267 1.5e-29 134.0 216 44.4
Dinv14314 Davidia involucrata HOM05D003648 ORTHO05D004267 3.2e-29 132.9 175 47.4
Dinv16371 Davidia involucrata HOM05D003648 ORTHO05D004267 5.5e-29 132.1 200 43.5
EL10Ac3g06898 Beta vulgaris HOM05D003648 ORTHO05D004267 1.6e-28 130.6 135 56.3
Ciclev10012160m.g Citrus clementina HOM05D003648 ORTHO05D004267 1.6e-28 130.6 256 38.3
DCAR_013539 Daucus carota HOM05D003648 ORTHO05D004267 1.6e-28 130.6 287 38.3
Dinv24064 Davidia involucrata HOM05D003648 ORTHO05D004267 1.6e-28 130.6 218 43.1
Actinidia22043 Actinidia chinensis HOM05D003648 ORTHO05D004267 2.1e-28 130.2 201 44.8
vmacro07898 Vaccinium macrocarpon HOM05D003648 ORTHO05D004267 6.1e-28 128.6 122 56.6
Oeu007752.1 Olea europaea HOM05D003648 ORTHO05D004267 1.0e-27 127.9 217 41.9
Psat3g068040 Pisum sativum HOM05D003648 ORTHO05D004267 2.3e-27 126.7 158 48.1
Lsat_1_v5_gn_9_26100 Lactuca sativa HOM05D003648 ORTHO05D004267 3.0e-27 126.3 234 41.5
TAR369G0578 Trochodendron aralioides HOM05D003648 ORTHO05D004267 6.8e-27 125.2 241 41.1
ClCG10G017600 Citrullus lanatus HOM05D003648 ORTHO05D004267 1.2e-26 124.4 116 60.3
Hund19206 Selenicereus undatus HOM05D003648 ORTHO05D004267 1.5e-26 124.0 172 45.9
Psat0s5171g0040 Pisum sativum HOM05D003648 ORTHO05D004267 2.6e-26 123.2 154 48.1
Nitab4.5_0006890g0010 Nicotiana tabacum HOM05D003648 ORTHO05D004267 2.2e-25 120.2 235 40.4
Rhsim03G0005500 Rhododendron simsii HOM05D003648 ORTHO05D004267 2.2e-25 120.2 235 42.1
GSVIVG01033479001 Vitis vinifera HOM05D003648 ORTHO05D004267 2.2e-25 120.2 225 40.4
Actinidia32398 Actinidia chinensis HOM05D003648 ORTHO05D004267 4.9e-25 119.0 236 39.4
TAR633G0715 Trochodendron aralioides HOM05D003648 ORTHO05D004267 6.3e-25 118.6 231 39.4
CANSAT64G1307 Cannabis sativa HOM05D003648 ORTHO05D004267 1.1e-24 117.9 310 36.1
arahy.Tifrunner.gnm1.ann1.D8BKSU Arachis hypogaea HOM05D003648 ORTHO05D004267 1.8e-24 117.1 234 39.7
PGR004G0238 Punica granatum HOM05D003648 ORTHO05D004267 2.4e-24 116.7 125 56.0
Nn7g35998 Nelumbo nucifera HOM05D003648 ORTHO05D004267 1.2e-23 114.4 278 34.5
arahy.Tifrunner.gnm1.ann1.DZ4RFW Arachis hypogaea HOM05D003648 ORTHO05D004267 1.6e-23 114.0 232 39.7
PGSC0003DMG400023669 Solanum tuberosum HOM05D003648 ORTHO05D004267 2.7e-23 113.2 257 38.1
THA.LOC104802623 Tarenaya hassleriana HOM05D003648 ORTHO05D004267 2.7e-23 113.2 236 40.7
Solyc10g080530.2 Solanum lycopersicum HOM05D003648 ORTHO05D004267 5.9e-23 112.1 230 39.6
GSVIVG01033486001 Vitis vinifera HOM05D003648 ORTHO05D004267 5.9e-23 112.1 122 54.1
AT2G42040 Arabidopsis thaliana HOM05D003648 ORTHO05D004267 7.7e-23 111.7 124 51.6
Nn2g15714 Nelumbo nucifera HOM05D003648 ORTHO05D004267 7.7e-23 111.7 262 36.3
Oeu039811.1 Olea europaea HOM05D003648 ORTHO05D004267 1.0e-22 111.3 117 50.4
AL4G40410 Arabidopsis lyrata HOM05D003648 ORTHO05D004267 1.7e-22 110.5 117 53.8
Aqoxy2G00100 Aquilegia oxysepala HOM05D003648 ORTHO05D004267 3.8e-22 109.4 141 46.8
CAN.G128.46 Capsicum annuum HOM05D003648 ORTHO05D004267 3.8e-22 109.4 238 39.9
CDE05G0371 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 5.0e-22 109.0 223 31.8
Nn7g35986 Nelumbo nucifera HOM05D003648 ORTHO05D004267 6.6e-22 108.6 272 37.1
C03p28080 Brassica napus HOM05D003648 ORTHO05D004267 1.5e-21 107.5 119 51.3
Ah.13g075770 Amaranthus hybridus HOM05D003648 ORTHO05D004267 2.5e-21 106.7 122 53.3
BcaC01g05312 Brassica carinata HOM05D003648 ORTHO05D004267 3.3e-21 106.3 119 52.9
HanXRQChr10g0289891 Helianthus annuus HOM05D003648 ORTHO05D004267 3.3e-21 106.3 184 39.1
DCAR_017003 Daucus carota HOM05D003648 ORTHO05D004267 4.3e-21 105.9 278 31.7
BolC3t15177H Brassica oleracea HOM05D003648 ORTHO05D004267 7.3e-21 105.1 121 52.1
BcaB01g03435 Brassica carinata HOM05D003648 ORTHO05D004267 1.2e-20 104.4 126 46.8
A03p23540 Brassica napus HOM05D003648 ORTHO05D004267 1.2e-20 104.4 119 52.1
BraA03t11571Z Brassica rapa HOM05D003648 ORTHO05D004267 1.2e-20 104.4 119 52.1
Carub.0004s2437 Capsella rubella HOM05D003648 ORTHO05D004267 3.6e-20 102.8 112 52.7
Migut.J01846 Erythranthe guttata HOM05D003648 ORTHO05D004267 3.6e-20 102.8 149 45.6
BraA05t19262Z Brassica rapa HOM05D003648 ORTHO05D004267 6.1e-20 102.1 122 49.2
A05p02700 Brassica napus HOM05D003648 ORTHO05D004267 8.0e-20 101.7 122 49.2
SpUn1032_0010 Schrenkiella parvula HOM05D003648 ORTHO05D004267 8.0e-20 101.7 114 53.5
Thhalv10017052m.g Eutrema salsugineum HOM05D003648 ORTHO05D004267 1.8e-19 100.5 207 37.7
CARHR137130 Cardamine hirsuta HOM05D003648 ORTHO05D004267 2.3e-19 100.1 223 36.3
MBI19_g23209_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 2.3e-19 100.1 126 46.0
MBI19_g03064_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 4.0e-19 99.4 172 44.8
SalBow6G7267 Salvia bowleyana HOM05D003648 ORTHO05D004267 5.2e-19 99.0 140 46.4
TAR623G0235 Trochodendron aralioides HOM05D003648 ORTHO05D004267 5.2e-19 99.0 191 38.2
BcaC02g12455 Brassica carinata HOM05D003648 ORTHO05D004267 8.9e-19 98.2 122 47.5
C04p03220 Brassica napus HOM05D003648 ORTHO05D004267 8.9e-19 98.2 122 47.5
BolC4t21960H Brassica oleracea HOM05D003648 ORTHO05D004267 8.9e-19 98.2 122 47.5
THA.LOC104824476 Tarenaya hassleriana HOM05D003648 ORTHO05D004267 2.0e-18 97.1 220 37.7
Ah.04g152510 Amaranthus hybridus HOM05D003648 ORTHO05D004267 2.6e-18 96.7 212 41.5
CAN.G128.47 Capsicum annuum HOM05D003648 ORTHO05D004267 3.4e-18 96.3 233 38.2
MBI13_g32435_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 3.4e-18 96.3 128 45.3
Aa31LG1G24140 Aethionema arabicum HOM05D003648 ORTHO05D004267 5.7e-18 95.5 207 36.2
BcaC02g07267 Brassica carinata HOM05D003648 ORTHO05D004267 5.7e-18 95.5 117 49.6
C04p69480 Brassica napus HOM05D003648 ORTHO05D004267 7.5e-18 95.1 117 49.6
BolC4t28447H Brassica oleracea HOM05D003648 ORTHO05D004267 7.5e-18 95.1 123 48.0
AUR62015354 Chenopodium quinoa HOM05D003648 ORTHO05D004267 7.5e-18 95.1 147 44.9
CDE06G0452 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 2.2e-17 93.6 226 36.7
CDE04G2150 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 3.7e-17 92.8 226 38.1
MBI19_g43859_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 1.1e-16 91.3 130 43.8
CDE11G0439 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 3.2e-16 89.7 56 69.6
Actinidia22048 Actinidia chinensis HOM05D003648 ORTHO05D014310 9.2e-16 88.2 210 36.2
BraA04t18655Z Brassica rapa HOM05D003648 ORTHO05D004267 1.6e-15 87.4 123 45.5
Os02g0773600 Oryza sativa ssp. japonica HOM05D003648 ORTHO05D004267 2.0e-15 87.0 65 67.7
Nn7g36026 Nelumbo nucifera HOM05D003648 ORTHO05D004267 2.7e-15 86.7 103 43.7
HPP92_016181 Vanilla planifolia HOM05D003648 ORTHO05D004267 2.7e-15 86.7 46 82.6
HPP92_026735 Vanilla planifolia HOM05D003648 ORTHO05D004267 2.7e-15 86.7 46 82.6
BcaB06g29223 Brassica carinata HOM05D003648 ORTHO05D004267 3.5e-15 86.3 110 49.1
A04p31970 Brassica napus HOM05D003648 ORTHO05D004267 5.9e-15 85.5 117 44.4
Os06g0207600 Oryza sativa ssp. japonica HOM05D003648 ORTHO05D004267 5.9e-15 85.5 40 90.0
ECA247G1467 Erigeron canadensis HOM05D003648 ORTHO05D004267 7.8e-15 85.1 164 41.5
Zm00001eb193290 Zea mays HOM05D003648 ORTHO05D004267 3.9e-14 82.8 49 75.5
Dinv36431 Davidia involucrata HOM05D003648 ORTHO05D004267 7.3e-13 78.6 69 56.5
QL07p024250 Quercus lobata HOM05D046221 ORTHO05D014310 4.0e-11 72.8 169 35.5
SEGI_09004 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 1.5e-10 70.9 70 50.0
ATR0598G173 Amborella trichopoda HOM05D003648 ORTHO05D004267 3.4e-10 69.7 227 30.4
SEGI_21966 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 3.4e-10 69.7 40 75.0
Rhsim03G0005000 Rhododendron simsii HOM05D003648 ORTHO05D014310 4.4e-10 69.3 183 33.9
SEGI_34260 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 1.3e-09 67.8 50 62.0
QL07p024385 Quercus lobata HOM05D046221 ORTHO05D014310 2.9e-09 66.6 160 34.4
SEGI_00470 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 2.4e-08 63.5 37 70.3
SEGI_22789 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 3.2e-08 63.2 86 43.0
Aqoxy1G04270 Aquilegia oxysepala HOM05D003648 ORTHO05D004267 4.6e-07 59.3 49 51.0
ATR0598G250 Amborella trichopoda HOM05D003648 ORTHO05D004267 6.6e-06 55.5 54 42.6


User provided reference genes

Program Settings