Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G1598 Trifolium pratense HOM05D005179 ORTHO05D006225 1.4e-68 263.1 154 100.0
Medtr1g032050 Medicago truncatula HOM05D005179 ORTHO05D006225 7.8e-48 194.1 157 70.1
Medtr1g032400 Medicago truncatula HOM05D005179 ORTHO05D006225 7.8e-48 194.1 157 70.1
Ca_09769_v3 Cicer arietinum L. HOM05D005179 ORTHO05D006225 8.1e-45 184.1 154 76.0
Psat6g061040 Pisum sativum HOM05D005179 ORTHO05D006225 3.2e-41 172.2 140 70.7
Glyma.10G025200 Glycine max HOM05D005179 ORTHO05D006225 4.6e-40 168.3 154 71.4
Glyma.02G148700 Glycine max HOM05D005179 ORTHO05D006225 1.0e-39 167.2 154 70.8
Lalb_Chr21g0306521 Lupinus albus HOM05D005179 ORTHO05D006225 4.7e-37 158.3 154 64.9
Lj5g0012316 Lotus japonicus HOM05D005179 ORTHO05D006225 8.9e-36 154.1 155 59.4
Glyma.19G154300 Glycine max HOM05D005179 ORTHO05D006225 4.1e-33 145.2 155 61.3
Glyma.03G151700 Glycine max HOM05D005179 ORTHO05D006225 7.1e-33 144.4 150 62.7
Ca_08572_v3 Cicer arietinum L. HOM05D005179 ORTHO05D006225 2.7e-32 142.5 168 56.0
Phvul.007G170000 Phaseolus vulgaris HOM05D005179 ORTHO05D006225 7.8e-32 141.0 154 47.4
Medtr7g094650 Medicago truncatula HOM05D005179 ORTHO05D006225 1.3e-31 140.2 177 54.2
VMungo0720G0860 Vigna mungo HOM05D005179 ORTHO05D006225 1.5e-30 136.7 154 48.1
Phvul.001G149300 Phaseolus vulgaris HOM05D005179 ORTHO05D006225 9.6e-30 134.0 151 60.3
arahy.Tifrunner.gnm1.ann1.YN028F Arachis hypogaea HOM05D000257 ORTHO05D009070 4.7e-29 131.7 160 59.4
VMungo1383G3409 Vigna mungo HOM05D005179 ORTHO05D006225 4.7e-29 131.7 153 60.8
Lj1g0021337 Lotus japonicus HOM05D005179 ORTHO05D006225 1.1e-28 130.6 162 56.2
arahy.Tifrunner.gnm1.ann1.AZF37F Arachis hypogaea HOM05D000257 ORTHO05D009070 4.0e-28 128.6 160 58.8
Psat3g065120 Pisum sativum HOM05D005179 ORTHO05D006225 2.9e-26 122.5 174 52.9
CANSAT25G0479 Cannabis sativa HOM05D005179 ORTHO05D006225 3.8e-26 122.1 143 53.8
Lalb_Chr01g0020211 Lupinus albus HOM05D005179 ORTHO05D006225 6.0e-24 114.8 172 51.2
Nitab4.5_0001028g0210 Nicotiana tabacum HOM05D005179 ORTHO05D006225 1.7e-23 113.2 146 43.8
Ciclev10024447m.g Citrus clementina HOM05D005179 ORTHO05D006225 1.9e-22 109.8 149 43.0
Dinv32955 Davidia involucrata HOM05D005179 ORTHO05D006225 1.9e-22 109.8 150 52.0
Gohir.A11G121400 Gossypium hirsutum HOM05D005179 ORTHO05D006225 2.5e-22 109.4 140 55.0
Ah.08g213000 Amaranthus hybridus HOM05D005179 ORTHO05D006225 5.6e-22 108.2 151 43.0
Lalb_Chr25g0290231 Lupinus albus HOM05D005179 ORTHO05D006225 1.3e-21 107.1 186 44.6
Atru.chr5.1383 Acer truncatum HOM05D005179 ORTHO05D006225 1.6e-21 106.7 163 47.2
Hma1.2p1_0628F.1_g191965 Hydrangea macrophylla HOM05D005179 ORTHO05D006225 4.8e-21 105.1 173 48.6
Ah.15g091740 Amaranthus hybridus HOM05D005179 ORTHO05D006225 6.2e-21 104.8 173 44.5
Oeu015958.1 Olea europaea HOM05D005179 ORTHO05D006225 8.1e-21 104.4 144 50.7
Gorai.007G135300 Gossypium raimondii HOM05D005179 ORTHO05D006225 1.8e-20 103.2 155 51.0
Thecc.01G282700 Theobroma cacao HOM05D005179 ORTHO05D006225 1.8e-20 103.2 145 53.1
TWI59G1208 Tripterygium wilfordii HOM05D005179 ORTHO05D006225 1.8e-20 103.2 153 35.3
Gohir.D11G126500 Gossypium hirsutum HOM05D005179 ORTHO05D006225 3.1e-20 102.4 155 51.0
MD03G1268100 Malus domestica HOM05D005179 ORTHO05D006225 3.1e-20 102.4 139 50.4
Prupe.8G243700 Prunus persica HOM05D005179 ORTHO05D006225 4.0e-20 102.1 175 50.3
Dinv11251 Davidia involucrata HOM05D005179 ORTHO05D006225 5.3e-20 101.7 123 52.8
MD11G1289000 Malus domestica HOM05D000257 ORTHO05D009070 5.3e-20 101.7 144 50.0
Sc24g0004150 Simmondsia chinensis HOM05D005179 ORTHO05D006225 5.3e-20 101.7 152 50.7
CsaV3_7G028640 Cucumis sativus L. HOM05D005179 ORTHO05D006225 1.5e-19 100.1 153 42.5
MELO3C015854.2 Cucumis melo HOM05D005179 ORTHO05D006225 2.6e-19 99.4 155 42.6
Sabra02G0167400 Salix brachista HOM05D005179 ORTHO05D006225 2.6e-19 99.4 141 42.6
Potri.002G215200 Populus trichocarpa HOM05D005179 ORTHO05D006225 4.4e-19 98.6 143 42.0
SalBow4G1980 Salvia bowleyana HOM05D005179 ORTHO05D006225 4.4e-19 98.6 143 53.1
MSTRG.21570 Avicennia marina HOM05D005179 ORTHO05D006225 5.8e-19 98.2 144 54.2
Potri.014G139200 Populus trichocarpa HOM05D005179 ORTHO05D006225 5.8e-19 98.2 150 48.0
SalBow6G3683 Salvia bowleyana HOM05D005179 ORTHO05D006225 5.8e-19 98.2 149 43.0
Solyc09g064900.1 Solanum lycopersicum HOM05D005179 ORTHO05D006225 5.8e-19 98.2 147 50.3
Lsat_1_v5_gn_1_29921 Lactuca sativa HOM05D005179 ORTHO05D006225 1.7e-18 96.7 179 46.9
Sabra14G0104900 Salix brachista HOM05D005179 ORTHO05D006225 2.2e-18 96.3 160 46.2
Duzib138G1054 Durio zibethinus HOM05D005179 ORTHO05D006225 3.8e-18 95.5 144 47.9
ClCG09G006920 Citrullus lanatus HOM05D000257 ORTHO05D009070 6.4e-18 94.7 173 44.5
FAN20G2888 Fragaria x ananassa HOM05D005179 ORTHO05D006225 1.1e-17 94.0 152 47.4
Potri.014G139100 Populus trichocarpa HOM05D005179 ORTHO05D006225 1.1e-17 94.0 131 49.6
TAR636G3147 Trochodendron aralioides HOM05D005179 ORTHO05D006225 1.1e-17 94.0 172 42.4
COL.COLO4_09131 Corchorus olitorius HOM05D005179 ORTHO05D006225 1.4e-17 93.6 160 49.4
Sed0008634 Sechium edule HOM05D005179 ORTHO05D006225 1.9e-17 93.2 160 38.8
Cpa.g.sc64.166 Carica papaya HOM05D005179 ORTHO05D006225 2.4e-17 92.8 150 50.7
CSS0035012 Camellia sinensis var. sinensis HOM05D005179 ORTHO05D006225 3.2e-17 92.4 167 45.5
Haze_04736 Corylus avellana HOM05D005179 ORTHO05D006225 4.2e-17 92.0 148 50.0
SGA_v2.0_scaffold11G05800 Striga asiatica HOM05D005179 ORTHO05D006225 4.2e-17 92.0 138 36.2
CiPaw.07G093600 Carya illinoinensis HOM05D005179 ORTHO05D006225 5.4e-17 91.7 160 40.6
CAN.G609.9 Capsicum annuum HOM05D005179 ORTHO05D006225 7.1e-17 91.3 110 54.5
Migut.D00272 Erythranthe guttata HOM05D005179 ORTHO05D006225 1.2e-16 90.5 164 47.0
unitig_8.g3720 Utricularia gibba HOM05D005179 ORTHO05D006225 1.6e-16 90.1 151 48.3
PGR044G1538 Punica granatum HOM05D005179 ORTHO05D006225 2.1e-16 89.7 163 46.6
ECA247G2094 Erigeron canadensis HOM05D005179 ORTHO05D006225 2.7e-16 89.4 56 55.4
Sed0002169 Sechium edule HOM05D005179 ORTHO05D006225 3.5e-16 89.0 163 46.6
FvH4_2g23841 Fragaria vesca HOM05D005179 ORTHO05D006225 4.6e-16 88.6 54 61.1
Gohir.D08G077600 Gossypium hirsutum HOM05D005179 ORTHO05D006225 4.6e-16 88.6 160 40.0
Sed0008870 Sechium edule HOM05D005179 ORTHO05D006225 4.6e-16 88.6 151 39.1
DCAR_018411 Daucus carota HOM05D005179 ORTHO05D006225 6.0e-16 88.2 152 50.0
FAN24G3244 Fragaria x ananassa HOM05D005179 ORTHO05D006225 6.0e-16 88.2 54 61.1
Gohir.D08G077500 Gossypium hirsutum HOM05D005179 ORTHO05D006225 6.0e-16 88.2 169 47.3
Sopen09g026600 Solanum pennellii HOM05D005179 ORTHO05D006225 6.0e-16 88.2 114 55.3
HanXRQChr15g0466391 Helianthus annuus HOM05D005179 ORTHO05D006225 7.9e-16 87.8 53 58.5
Sc05g0004870 Simmondsia chinensis HOM05D005179 ORTHO05D006225 7.9e-16 87.8 155 44.5
Nitab4.5_0002386g0020 Nicotiana tabacum HOM05D005179 ORTHO05D006225 1.0e-15 87.4 57 56.1
ClCG07G000210 Citrullus lanatus HOM05D005179 ORTHO05D006225 1.3e-15 87.0 155 49.0
FAN15G0349 Fragaria x ananassa HOM05D005179 ORTHO05D006225 1.3e-15 87.0 54 61.1
FAN15G1538 Fragaria x ananassa HOM05D005179 ORTHO05D006225 1.3e-15 87.0 54 61.1
FAN27G1844 Fragaria x ananassa HOM05D005179 ORTHO05D006225 1.3e-15 87.0 54 59.3
Gohir.A08G069300 Gossypium hirsutum HOM05D005179 ORTHO05D006225 1.3e-15 87.0 144 49.3
Cfa006114 Carpinus fangiana HOM05D005179 ORTHO05D006225 1.7e-15 86.7 122 55.7
MSTRG.18220 Avicennia marina HOM05D005179 ORTHO05D006225 2.3e-15 86.3 149 38.9
A07p26240 Brassica napus HOM05D005179 ORTHO05D006225 2.3e-15 86.3 55 58.2
BolC6t38030H Brassica oleracea HOM05D005179 ORTHO05D006225 2.3e-15 86.3 55 58.2
BraA07t30267Z Brassica rapa HOM05D005179 ORTHO05D006225 2.3e-15 86.3 55 58.2
Gorai.009G014800 Gossypium raimondii HOM05D005179 ORTHO05D006225 2.3e-15 86.3 138 48.6
Potri.004G022700 Populus trichocarpa HOM05D005179 ORTHO05D006225 2.3e-15 86.3 155 41.3
THA.LOC104802228 Tarenaya hassleriana HOM05D005179 ORTHO05D006225 2.3e-15 86.3 157 42.0
C06p28620 Brassica napus HOM05D005179 ORTHO05D006225 3.0e-15 85.9 55 58.2
Eucgr.K03387 Eucalyptus grandis HOM05D005179 ORTHO05D006225 3.0e-15 85.9 55 58.2
Gorai.004G082400 Gossypium raimondii HOM05D005179 ORTHO05D006225 3.0e-15 85.9 175 47.4
CiPaw.08G103900 Carya illinoinensis HOM05D005179 ORTHO05D006225 3.9e-15 85.5 169 42.6
Gohir.A12G005800 Gossypium hirsutum HOM05D005179 ORTHO05D006225 3.9e-15 85.5 125 52.8
A09p54910 Brassica napus HOM05D000257 ORTHO05D009070 5.1e-15 85.1 55 56.4
C08p37810 Brassica napus HOM05D000257 ORTHO05D009070 5.1e-15 85.1 55 56.4
BolC8t51360H Brassica oleracea HOM05D000257 ORTHO05D009070 5.1e-15 85.1 55 56.4
BraA09t40901Z Brassica rapa HOM05D000257 ORTHO05D009070 5.1e-15 85.1 55 56.4
CARHR173410 Cardamine hirsuta HOM05D005179 ORTHO05D006225 5.1e-15 85.1 55 56.4
Gohir.D12G005300 Gossypium hirsutum HOM05D005179 ORTHO05D006225 5.1e-15 85.1 138 47.8
Gorai.004G082500 Gossypium raimondii HOM05D005179 ORTHO05D006225 5.1e-15 85.1 158 36.7
Gorai.008G005200 Gossypium raimondii HOM05D005179 ORTHO05D006225 5.1e-15 85.1 138 47.8
Sopen02g023170 Solanum pennellii HOM05D005179 ORTHO05D006225 5.1e-15 85.1 114 49.1
AL5G45930 Arabidopsis lyrata HOM05D005179 ORTHO05D006225 8.7e-15 84.3 55 56.4
AT3G63095 Arabidopsis thaliana HOM05D005179 ORTHO05D006225 8.7e-15 84.3 55 56.4
Manes.05G074200 Manihot esculenta HOM05D005179 ORTHO05D006225 8.7e-15 84.3 142 39.4
Aa31LG10G16940 Aethionema arabicum HOM05D005179 ORTHO05D006225 1.5e-14 83.6 156 44.9
RcHm_v2.0_Chr6g0291441 Rosa chinensis HOM05D005179 ORTHO05D006225 1.9e-14 83.2 172 37.8
TWI59G0379 Tripterygium wilfordii HOM05D005179 ORTHO05D006225 1.9e-14 83.2 52 57.7
Carub.0005s2976 Capsella rubella HOM05D005179 ORTHO05D006225 2.5e-14 82.8 53 56.6
DCAR_002746 Daucus carota HOM05D005179 ORTHO05D006225 2.5e-14 82.8 124 50.8
Manes.01G209200 Manihot esculenta HOM05D005179 ORTHO05D006225 2.5e-14 82.8 125 46.4
Manes.05G074000 Manihot esculenta HOM05D005179 ORTHO05D006225 4.3e-14 82.0 50 58.0
Zm00001eb017420 Zea mays HOM05D005179 ORTHO05D006225 5.6e-14 81.6 55 56.4
Actinidia21103 Actinidia chinensis HOM05D000756 ORTHO05D000604 7.3e-14 81.3 137 49.6
SGA_v2.0_scaffold80G25940 Striga asiatica HOM05D005179 ORTHO05D006225 7.3e-14 81.3 126 47.6
Os07g0655800 Oryza sativa ssp. japonica HOM05D005179 ORTHO05D006225 9.6e-14 80.9 48 62.5
THA.LOC104817549 Tarenaya hassleriana HOM05D005179 ORTHO05D006225 9.6e-14 80.9 162 40.7
GSVIVG01011106001 Vitis vinifera HOM05D005179 ORTHO05D006225 9.6e-14 80.9 55 56.4
Zm00001eb329500 Zea mays HOM05D005179 ORTHO05D006225 9.6e-14 80.9 48 64.6
PGSC0003DMG400020123 Solanum tuberosum HOM05D005179 ORTHO05D006225 1.6e-13 80.1 152 42.8
Aqoxy2G03259 Aquilegia oxysepala HOM05D005179 ORTHO05D006225 2.1e-13 79.7 156 48.1
Rhsim13G0023300 Rhododendron simsii HOM05D005179 ORTHO05D006225 2.8e-13 79.3 185 36.8
Cc01_g19710 Coffea canephora HOM05D005179 ORTHO05D006225 4.8e-13 78.6 176 40.3
Zm00001eb394420 Zea mays HOM05D005179 ORTHO05D006225 4.8e-13 78.6 55 54.5
A04p00290 Brassica napus HOM05D005179 ORTHO05D006225 6.2e-13 78.2 55 47.3
C04p30120 Brassica napus HOM05D005179 ORTHO05D006225 6.2e-13 78.2 55 47.3
BolC4t24544H Brassica oleracea HOM05D005179 ORTHO05D006225 6.2e-13 78.2 55 47.3
BraA04t15748Z Brassica rapa HOM05D005179 ORTHO05D006225 6.2e-13 78.2 55 47.3
Migut.N02158 Erythranthe guttata HOM05D005179 ORTHO05D006225 8.1e-13 77.8 127 51.2
Manes.01G209300 Manihot esculenta HOM05D005179 ORTHO05D006225 1.1e-12 77.4 48 56.2
ECA236G2709 Erigeron canadensis HOM05D005179 ORTHO05D006225 5.3e-12 75.1 49 55.1
Os03g0357500 Oryza sativa ssp. japonica HOM05D005179 ORTHO05D006225 5.3e-12 75.1 55 49.1
Oeu028081.1 Olea europaea HOM05D005179 ORTHO05D006225 2.6e-11 72.8 46 60.9
PSO210G7214 Papaver somniferum HOM05D005179 ORTHO05D006225 2.6e-11 72.8 138 44.9
PSO832G0665 Papaver somniferum HOM05D005179 ORTHO05D006225 2.6e-11 72.8 138 44.9
ATR0626G310 Amborella trichopoda HOM05D005179 ORTHO05D006225 3.4e-11 72.4 113 49.6
Nn1g02158 Nelumbo nucifera HOM05D005179 ORTHO05D006225 4.5e-11 72.0 148 44.6
PSO447G0321 Papaver somniferum HOM05D005179 ORTHO05D006225 4.5e-11 72.0 53 47.2
Aqoxy5G00531 Aquilegia oxysepala HOM05D001530 ORTHO05D003676 1.3e-10 70.5 51 51.0
PSO210G2426 Papaver somniferum HOM05D005179 ORTHO05D006225 1.3e-10 70.5 53 45.3
Rhsim01G0275800 Rhododendron simsii HOM05D000756 ORTHO05D000604 1.3e-10 70.5 51 51.0
SGA_v2.0_scaffold258G45766 Striga asiatica HOM05D005179 ORTHO05D006225 2.9e-10 69.3 150 33.3
Gohir.A08G069200 Gossypium hirsutum HOM05D005179 ORTHO05D006225 1.4e-09 67.0 55 49.1
Nn4g26188 Nelumbo nucifera HOM05D005179 ORTHO05D006225 5.5e-09 65.1 47 48.9
HPP92_008197 Vanilla planifolia HOM05D024720 ORTHO05D006225 1.0e-07 60.8 50 42.0
vmacro14931 Vaccinium macrocarpon HOM05D001530 ORTHO05D003676 1.3e-07 60.5 112 35.7
Actinidia00740 Actinidia chinensis HOM05D005179 ORTHO05D006225 2.3e-07 59.7 44 43.2
QL12p022365 Quercus lobata HOM05D005179 ORTHO05D006225 8.7e-07 57.8 43 53.5
Zm00001eb042810 Zea mays HOM05D024720 ORTHO05D030308 9.6e-06 54.3 49 40.8


User provided reference genes

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