Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G15979 Trifolium pratense HOM05D003942 ORTHO05D004527 3.8e-185 651.4 330 100.0
Medtr8g031000 Medicago truncatula HOM05D003942 ORTHO05D004527 3.6e-167 591.7 335 89.3
Psat4g154400 Pisum sativum HOM05D003942 ORTHO05D004527 2.2e-164 582.4 335 87.8
Ca_23643_v3 Cicer arietinum L. HOM05D003942 ORTHO05D004527 3.7e-164 581.6 335 87.8
Lalb_Chr04g0256871 Lupinus albus HOM05D003942 ORTHO05D004527 1.3e-153 546.6 333 82.9
Glyma.07G071900 Glycine max HOM05D003942 ORTHO05D004527 7.3e-152 540.8 335 81.2
VMungo0331G0006 Vigna mungo HOM05D003942 ORTHO05D004527 5.2e-150 534.6 335 79.1
Glyma.03G010800 Glycine max HOM05D003942 ORTHO05D004527 6.8e-150 534.3 337 78.9
Lj3g0006137 Lotus japonicus HOM05D003942 ORTHO05D004527 7.5e-149 530.8 333 81.4
Phvul.010G097300 Phaseolus vulgaris HOM05D003942 ORTHO05D004527 5.4e-147 524.6 335 78.2
Lalb_Chr03g0038211 Lupinus albus HOM05D003942 ORTHO05D004527 1.7e-145 519.6 333 78.1
Thecc.01G360500 Theobroma cacao HOM05D003942 ORTHO05D004527 2.0e-141 506.1 332 76.8
TAR375G0209 Trochodendron aralioides HOM05D003942 ORTHO05D004527 1.7e-140 503.1 333 75.7
arahy.Tifrunner.gnm1.ann1.2H0UDK Arachis hypogaea HOM05D003942 ORTHO05D004527 2.2e-140 502.7 353 73.1
arahy.Tifrunner.gnm1.ann1.Q5YAPI Arachis hypogaea HOM05D003942 ORTHO05D004527 1.4e-139 500.0 353 72.8
COL.COLO4_12700 Corchorus olitorius HOM05D003942 ORTHO05D004527 1.9e-139 499.6 334 75.7
Gorai.007G098800 Gossypium raimondii HOM05D003942 ORTHO05D004527 2.4e-139 499.2 334 76.3
Dinv32469 Davidia involucrata HOM05D003942 ORTHO05D004527 7.0e-139 497.7 333 74.8
Duzib133G0298 Durio zibethinus HOM05D003942 ORTHO05D004527 7.0e-139 497.7 332 75.6
Actinidia10022 Actinidia chinensis HOM05D003942 ORTHO05D004527 2.1e-138 496.1 333 72.7
TAR629G1832 Trochodendron aralioides HOM05D003942 ORTHO05D004527 2.7e-138 495.7 333 75.1
Gohir.A11G088200 Gossypium hirsutum HOM05D003942 ORTHO05D004527 1.0e-137 493.8 334 75.7
QL08p049021 Quercus lobata HOM05D003942 ORTHO05D004527 6.6e-137 491.1 332 73.8
Cpa.g.sc18.243 Carica papaya HOM05D003942 ORTHO05D004527 8.6e-137 490.7 333 72.7
Rhsim07G0016400 Rhododendron simsii HOM05D003942 ORTHO05D004527 8.6e-137 490.7 333 72.7
GSVIVG01026895001 Vitis vinifera HOM05D003942 ORTHO05D004527 8.6e-137 490.7 332 72.9
Cfa003938 Carpinus fangiana HOM05D003942 ORTHO05D004527 1.5e-136 490.0 334 73.4
CANSAT56G2580 Cannabis sativa HOM05D003942 ORTHO05D004527 1.9e-136 489.6 331 73.7
CSS0049620 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 4.3e-136 488.4 333 72.7
CSS0041241 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 5.6e-136 488.0 333 72.7
Manes.05G036000 Manihot esculenta HOM05D003942 ORTHO05D004527 7.3e-136 487.6 333 72.7
CiPaw.01G059900 Carya illinoinensis HOM05D003942 ORTHO05D004527 9.5e-136 487.3 334 74.0
TWI23G1005 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 3.6e-135 485.3 333 73.6
Potri.014G082900 Populus trichocarpa HOM05D003942 ORTHO05D004527 4.7e-135 485.0 330 73.6
CiPaw.02G030000 Carya illinoinensis HOM05D003942 ORTHO05D004527 8.1e-135 484.2 333 73.3
Sabra14G0060100 Salix brachista HOM05D003942 ORTHO05D004527 8.1e-135 484.2 330 73.6
THA.LOC104817290 Tarenaya hassleriana HOM05D003942 ORTHO05D004527 2.3e-134 482.6 334 71.9
PGR042G2566 Punica granatum HOM05D003942 ORTHO05D004527 4.0e-134 481.9 333 71.8
Peaxi162Scf00191g01422 Petunia axillaris HOM05D003942 ORTHO05D004527 5.2e-134 481.5 333 72.1
Nitab4.5_0008050g0040 Nicotiana tabacum HOM05D003942 ORTHO05D004527 4.4e-133 478.4 332 72.9
SGA_v2.0_scaffold43G16422 Striga asiatica HOM05D003942 ORTHO05D004527 5.8e-133 478.0 334 70.7
TWI59G0555 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 5.8e-133 478.0 333 71.5
RcHm_v2.0_Chr1g0355071 Rosa chinensis HOM05D003942 ORTHO05D004527 1.7e-132 476.5 333 70.6
Atru.chr5.464 Acer truncatum HOM05D003942 ORTHO05D004527 3.7e-132 475.3 336 69.6
MD07G1139000 Malus domestica HOM05D003942 ORTHO05D004527 4.9e-132 474.9 330 70.9
Prupe.2G168100 Prunus persica HOM05D003942 ORTHO05D004527 1.1e-131 473.8 332 71.1
CAN.G399.13 Capsicum annuum HOM05D003942 ORTHO05D004527 1.4e-131 473.4 333 70.6
Eucgr.E00157 Eucalyptus grandis HOM05D003942 ORTHO05D004527 2.4e-131 472.6 330 71.8
FAN01G0250 Fragaria x ananassa HOM05D003942 ORTHO05D004527 2.4e-131 472.6 332 69.6
Ciclev10020374m.g Citrus clementina HOM05D003942 ORTHO05D004527 4.1e-131 471.9 333 70.6
FvH4_7g14170 Fragaria vesca HOM05D003942 ORTHO05D004527 5.4e-131 471.5 332 69.3
MBI18_g25515_MAGBIO Magnolia biondii HOM05D003942 ORTHO05D004527 9.2e-131 470.7 334 70.4
FAN06G2309 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.2e-130 470.3 332 69.0
Nitab4.5_0001702g0090 Nicotiana tabacum HOM05D003942 ORTHO05D004527 1.6e-130 469.9 332 71.7
FAN10G4090 Fragaria x ananassa HOM05D003942 ORTHO05D004527 2.1e-130 469.5 332 69.3
PGSC0003DMG400021644 Solanum tuberosum HOM05D003942 ORTHO05D004527 2.1e-130 469.5 332 71.1
Migut.N01440 Erythranthe guttata HOM05D003942 ORTHO05D004527 3.5e-130 468.8 332 69.0
FAN06G3470 Fragaria x ananassa HOM05D003942 ORTHO05D004527 3.5e-130 468.8 332 69.3
MD01G1057600 Malus domestica HOM05D003942 ORTHO05D004527 6.0e-130 468.0 330 70.3
Solyc05g049900.3 Solanum lycopersicum HOM05D003942 ORTHO05D004527 1.0e-129 467.2 332 70.5
Sopen05g028240 Solanum pennellii HOM05D003942 ORTHO05D004527 1.0e-129 467.2 332 70.5
CDE09G0298 Ceratophyllum demersum HOM05D003942 ORTHO05D004527 1.7e-129 466.5 332 69.3
MSTRG.4859 Avicennia marina HOM05D003942 ORTHO05D004527 3.0e-129 465.7 332 69.3
Aqoxy5G04009 Aquilegia oxysepala HOM05D003942 ORTHO05D004527 3.9e-129 465.3 336 69.3
FAN03G2475 Fragaria x ananassa HOM05D003942 ORTHO05D004527 3.9e-129 465.3 332 68.7
SalBow5G2271 Salvia bowleyana HOM05D003942 ORTHO05D004527 5.1e-129 464.9 333 68.8
ECA240G2096 Erigeron canadensis HOM05D003942 ORTHO05D004527 1.1e-128 463.8 330 69.4
Cc02_g37870 Coffea canephora HOM05D003942 ORTHO05D004527 1.5e-128 463.4 331 68.9
Hund27285 Selenicereus undatus HOM05D003942 ORTHO05D004527 1.9e-128 463.0 334 67.7
Oeu020562.1 Olea europaea HOM05D003942 ORTHO05D004527 1.2e-127 460.3 331 68.6
Sp5g02060 Schrenkiella parvula HOM05D003942 ORTHO05D004527 1.6e-127 459.9 329 69.3
BcaC07g40631 Brassica carinata HOM05D003942 ORTHO05D004527 2.1e-127 459.5 329 69.0
A04p01160 Brassica napus HOM05D003942 ORTHO05D004527 3.6e-127 458.8 329 68.7
BraA04t15833Z Brassica rapa HOM05D003942 ORTHO05D004527 3.6e-127 458.8 329 68.7
AUR62022550 Chenopodium quinoa HOM05D003942 ORTHO05D004527 3.6e-127 458.8 332 66.0
BolC4t24688H Brassica oleracea HOM05D003942 ORTHO05D004527 6.2e-127 458.0 329 68.4
HanXRQChr16g0522811 Helianthus annuus HOM05D003942 ORTHO05D004527 6.2e-127 458.0 331 68.3
A09p53400 Brassica napus HOM05D003942 ORTHO05D004527 1.1e-126 457.2 329 68.1
C08p36210 Brassica napus HOM05D003942 ORTHO05D004527 1.1e-126 457.2 329 68.4
BolC8t51203H Brassica oleracea HOM05D003942 ORTHO05D004527 1.1e-126 457.2 329 68.4
Thhalv10006010m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 1.1e-126 457.2 329 68.4
C04p31390 Brassica napus HOM05D003942 ORTHO05D004527 1.4e-126 456.8 329 68.4
Aa31LG10G15570 Aethionema arabicum HOM05D003942 ORTHO05D004527 1.8e-126 456.4 329 68.1
Carub.0005s2799 Capsella rubella HOM05D003942 ORTHO05D004527 3.1e-126 455.7 329 69.3
AL5G43590 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 5.2e-126 454.9 329 68.7
AUR62004344 Chenopodium quinoa HOM05D003942 ORTHO05D004527 5.2e-126 454.9 332 65.4
BraA09t40766Z Brassica rapa HOM05D003942 ORTHO05D004527 1.5e-125 453.4 329 67.8
Ah.05g180690 Amaranthus hybridus HOM05D003942 ORTHO05D004527 5.8e-125 451.4 332 65.4
CARHR141140 Cardamine hirsuta HOM05D003942 ORTHO05D004527 2.9e-124 449.1 334 68.3
Lsat_1_v5_gn_3_137060 Lactuca sativa HOM05D003942 ORTHO05D004527 1.1e-123 447.2 323 68.1
Haze_15488 Corylus avellana HOM05D003942 ORTHO05D004527 1.9e-123 446.4 334 68.6
DCAR_015969 Daucus carota HOM05D003942 ORTHO05D004527 3.2e-123 445.7 333 67.3
AL4G45080 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 5.4e-123 444.9 334 66.2
Lj9A582T85 Lonicera japonica HOM05D003942 ORTHO05D004527 5.4e-123 444.9 395 60.0
Lsat_1_v5_gn_4_36221 Lactuca sativa HOM05D003942 ORTHO05D004527 1.2e-122 443.7 342 64.9
BolC4t28689H Brassica oleracea HOM05D003942 ORTHO05D004527 2.1e-122 443.0 336 65.5
Thhalv10001467m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 6.0e-122 441.4 334 66.2
HanXRQChr13g0426521 Helianthus annuus HOM05D003942 ORTHO05D004527 7.8e-122 441.0 331 66.2
Sp4g27940 Schrenkiella parvula HOM05D003942 ORTHO05D004527 7.8e-122 441.0 334 66.2
C04p71910 Brassica napus HOM05D003942 ORTHO05D004527 3.0e-121 439.1 336 64.9
BraA04t18872Z Brassica rapa HOM05D003942 ORTHO05D004527 5.1e-121 438.3 336 64.9
BcaC02g07065 Brassica carinata HOM05D003942 ORTHO05D004527 1.1e-120 437.2 336 65.5
Carub.0004s2857 Capsella rubella HOM05D003942 ORTHO05D004527 1.1e-120 437.2 334 66.2
Aa31LG1G27300 Aethionema arabicum HOM05D003942 ORTHO05D004527 1.5e-120 436.8 334 65.6
BcaC02g10219 Brassica carinata HOM05D003942 ORTHO05D004527 2.5e-120 436.0 329 67.5
BcaC09g52244 Brassica carinata HOM05D003942 ORTHO05D004527 5.6e-120 434.9 329 66.0
A04p34110 Brassica napus HOM05D003942 ORTHO05D004527 2.1e-119 433.0 336 64.6
EL10Ac1g00428 Beta vulgaris HOM05D003942 ORTHO05D004527 4.0e-118 428.7 304 66.8
HPP92_006558 Vanilla planifolia HOM05D003942 ORTHO05D004527 8.4e-116 421.0 335 62.4
unitig_8.g3394 Utricularia gibba HOM05D003942 ORTHO05D004527 5.3e-110 401.7 327 60.6
Os03g0106000 Oryza sativa ssp. japonica HOM05D003942 ORTHO05D004527 6.9e-110 401.4 332 62.0
ECA234G1137 Erigeron canadensis HOM05D003942 ORTHO05D004527 2.6e-109 399.4 315 64.4
AT2G45870 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 1.9e-107 393.3 276 70.7
Sc23g0002980 Simmondsia chinensis HOM05D003942 ORTHO05D004527 7.1e-107 391.3 276 70.3
Zm00001eb000510 Zea mays HOM05D003942 ORTHO05D004527 8.7e-105 384.4 351 56.1
SEGI_35716 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 3.4e-101 372.5 323 59.4
Pp3c4_15850 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.5e-99 366.3 328 56.1
Pp3c3_22870 Physcomitrium patens HOM05D003942 ORTHO05D004527 4.6e-98 362.1 328 55.5
SEGI_25793 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 7.9e-98 361.3 320 57.5
Mapoly0071s0037 Marchantia polymorpha HOM05D003942 ORTHO05D004527 3.4e-93 345.9 316 54.7
Duzib138G1448 Durio zibethinus HOM05D003942 ORTHO05D004527 4.3e-88 328.9 333 55.9
SMO364G0338 Selaginella moellendorffii HOM05D003942 ORTHO05D004527 3.4e-85 319.3 298 52.7
Nn1g01512 Nelumbo nucifera HOM05D003942 ORTHO05D004527 4.5e-85 318.9 333 54.4
ATR0680G085 Amborella trichopoda HOM05D003942 ORTHO05D004527 3.8e-76 289.3 333 50.2
vmacro13277 Vaccinium macrocarpon HOM05D003942 ORTHO05D004527 3.8e-76 289.3 349 47.0
Gohir.D11G092500 Gossypium hirsutum HOM05D003942 ORTHO05D004527 2.5e-75 286.6 205 73.7
AagrBONN_evm.TU.Sc2ySwM_228.958 Anthoceros agrestis HOM05D003942 ORTHO05D004527 2.2e-71 273.5 296 47.3
AT3G61320 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 3.7e-71 272.7 206 67.0
Mapoly0009s0131 Marchantia polymorpha HOM05D003942 ORTHO05D004527 2.0e-69 266.9 324 42.6
AagrBONN_evm.TU.Sc2ySwM_344.3805 Anthoceros agrestis HOM05D003942 ORTHO05D004527 1.0e-68 264.6 318 43.4
HPP92_011356 Vanilla planifolia HOM05D003942 ORTHO05D004527 6.7e-65 251.9 181 64.6
AagrBONN_evm.TU.Sc2ySwM_362.1957 Anthoceros agrestis HOM05D003942 ORTHO05D004527 2.8e-63 246.5 277 46.2
CBR_g44610 Chara braunii HOM05D000505 ORTHO05D000301 3.1e-62 243.0 319 38.9
Pp3c2_13700 Physcomitrium patens HOM05D003942 ORTHO05D004527 3.1e-62 243.0 299 43.5
Pp3c1_3670 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.6e-61 240.7 312 40.7
Pp3c1_34600 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.0e-61 240.4 325 38.5
Pp3c1_34560 Physcomitrium patens HOM05D003942 ORTHO05D004527 7.7e-61 238.4 293 43.7
Pp3c11_9440 Physcomitrium patens HOM05D003942 ORTHO05D004527 5.5e-59 232.3 292 40.8
Pp3c6_24250 Physcomitrium patens HOM05D003942 ORTHO05D004527 4.0e-57 226.1 293 41.3
Pp3c14_6660 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.4e-54 217.6 280 40.7
MD01G1202300 Malus domestica HOM05D003942 ORTHO05D004527 1.8e-54 217.2 202 57.9
CBR_g772 Chara braunii HOM05D003942 ORTHO05D004527 3.4e-48 196.4 331 32.9
AagrBONN_evm.TU.Sc2ySwM_228.2628 Anthoceros agrestis HOM05D003942 ORTHO05D004527 1.7e-47 194.1 153 56.9
FAN10G2852 Fragaria x ananassa HOM05D003942 ORTHO05D004527 2.4e-46 190.3 172 61.0
Oeu020563.1 Olea europaea HOM05D003942 ORTHO05D004527 5.4e-46 189.1 154 65.6
CARHR171630 Cardamine hirsuta HOM05D003942 ORTHO05D004527 5.0e-44 182.6 152 64.5
Cre16.g663450 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.4e-41 174.5 297 36.4
Cre06.g277650 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 9.8e-40 168.3 327 30.6
Cre16.g662600 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.3e-39 167.9 297 34.7
Cre16.g663400 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 3.7e-39 166.4 297 34.7
SEGI_34263 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 1.1e-38 164.9 149 61.1
C05p09980 Brassica napus HOM05D003942 ORTHO05D004527 1.4e-38 164.5 123 68.3
Cre06.g261750 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.4e-38 164.5 328 29.9
HPP92_011355 Vanilla planifolia HOM05D003942 ORTHO05D004527 2.0e-37 160.6 124 67.7
Cre11.g474700 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 8.6e-36 155.2 309 31.7
FAN10G0144 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.5e-35 154.5 145 61.4
CBR_g38187 Chara braunii HOM05D003942 ORTHO05D004527 1.5e-32 144.4 207 40.1
Cre01.g038100 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 2.6e-32 143.7 313 26.8
PRCOL_00004040 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 1.2e-29 134.8 300 33.0
Cre07.g355300 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.6e-29 134.4 295 28.5
Pp3c11_6680 Physcomitrium patens HOM05D003942 ORTHO05D004527 3.3e-27 126.7 103 55.3
PRCOL_00006054 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 4.7e-26 122.9 293 30.7
BcaB02g11262 Brassica carinata HOM05D003942 ORTHO05D004527 1.1e-25 121.7 119 50.4
MCO01G232 Micromonas commoda HOM05D003942 ORTHO05D004527 1.8e-25 120.9 314 28.3
Cre03.g199600 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 4.4e-24 116.3 217 30.0
PRCOL_00003097 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 4.4e-24 116.3 292 29.1
SEGI_01331 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 4.4e-24 116.3 99 58.6
PRCOL_00005764 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 1.1e-22 111.7 318 28.3
Oeu020564.1 Olea europaea HOM05D003942 ORTHO05D004527 2.1e-21 107.5 77 70.1
FAN10G3156 Fragaria x ananassa HOM05D000449 ORTHO05D004527 2.3e-20 104.0 104 57.7
PRCOL_00003548 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 6.6e-20 102.4 311 28.3
Pp3c6_17920 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.8e-18 97.1 191 34.6
MCO09G357 Micromonas commoda HOM05D003942 ORTHO05D004527 8.1e-18 95.5 349 25.5
PRCOL_00004398 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 1.1e-17 95.1 315 27.9
MCO01G007 Micromonas commoda HOM05D003942 ORTHO05D004527 6.4e-15 85.9 296 25.3
PSO478G4509 Papaver somniferum HOM05D003942 ORTHO05D004527 8.1e-10 68.9 58 58.6
Pp3c3_14710 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.2e-07 60.8 119 35.3
Pp3c20_3390 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.9e-06 57.8 83 43.4


User provided reference genes

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