Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G15967 Trifolium pratense HOM05D003378 ORTHO05D003942 1.3e-88 329.7 163 100.0
TPR.G15969 Trifolium pratense HOM05D003378 ORTHO05D003942 1.4e-58 229.9 264 53.0
Medtr4g015260 Medicago truncatula HOM05D003378 ORTHO05D003942 1.7e-56 223.0 264 50.8
Psat7g247920 Pisum sativum HOM05D003378 ORTHO05D003942 1.6e-51 206.5 263 47.9
Nn2g11403 Nelumbo nucifera HOM05D003378 ORTHO05D003942 2.1e-51 206.1 179 61.5
Ca_20313_v3 Cicer arietinum L. HOM05D003378 ORTHO05D003942 8.0e-51 204.1 264 47.0
arahy.Tifrunner.gnm1.ann1.YIK7D0 Arachis hypogaea HOM05D003378 ORTHO05D003942 1.4e-47 193.4 262 44.7
Lalb_Chr07g0193451 Lupinus albus HOM05D003378 ORTHO05D003942 1.8e-47 193.0 261 44.8
arahy.Tifrunner.gnm1.ann1.L6AUEE Arachis hypogaea HOM05D003378 ORTHO05D003942 2.4e-47 192.6 262 44.7
Cfa017247 Carpinus fangiana HOM05D003378 ORTHO05D003942 4.1e-47 191.8 264 43.6
Dinv37075 Davidia involucrata HOM05D003378 ORTHO05D003942 1.2e-46 190.3 262 45.0
Glyma.01G113000 Glycine max HOM05D003378 ORTHO05D003942 1.6e-46 189.9 261 44.8
Lj3g0001695 Lotus japonicus HOM05D003378 ORTHO05D003942 3.5e-46 188.7 264 44.3
Duzib093G0826 Durio zibethinus HOM05D003378 ORTHO05D003942 5.9e-46 188.0 243 46.5
COL.COLO4_14573 Corchorus olitorius HOM05D003378 ORTHO05D003942 7.7e-46 187.6 264 44.3
Lj2C81T6 Lonicera japonica HOM05D003378 ORTHO05D003942 7.7e-46 187.6 262 44.7
Duzib106G1409 Durio zibethinus HOM05D003378 ORTHO05D003942 1.0e-45 187.2 243 45.3
Glyma.03G078300 Glycine max HOM05D003378 ORTHO05D003942 1.0e-45 187.2 261 44.4
Duzib128G1405 Durio zibethinus HOM05D003378 ORTHO05D003942 1.3e-45 186.8 262 43.1
Peaxi162Scf00009g01921 Petunia axillaris HOM05D003378 ORTHO05D003942 3.8e-45 185.3 262 43.5
TWI77G0412 Tripterygium wilfordii HOM05D003378 ORTHO05D003942 3.8e-45 185.3 263 43.0
MELO3C009186.2 Cucumis melo HOM05D003378 ORTHO05D003942 5.0e-45 184.9 262 43.9
Gorai.002G261700 Gossypium raimondii HOM05D003378 ORTHO05D003942 5.0e-45 184.9 262 43.1
ClCG10G021890 Citrullus lanatus HOM05D003378 ORTHO05D003942 6.5e-45 184.5 262 43.9
Ca_07617_v3 Cicer arietinum L. HOM05D003378 ORTHO05D003942 1.1e-44 183.7 262 42.7
Hma1.2p1_0244F.1_g101280 Hydrangea macrophylla HOM05D003378 ORTHO05D003942 1.1e-44 183.7 263 43.3
CiPaw.09G207100 Carya illinoinensis HOM05D003378 ORTHO05D003942 1.5e-44 183.3 264 43.2
Glyma.07G146400 Glycine max HOM05D003378 ORTHO05D003942 1.5e-44 183.3 258 43.4
Phvul.010G005100 Phaseolus vulgaris HOM05D003378 ORTHO05D003942 1.5e-44 183.3 259 44.0
Nitab4.5_0004912g0010 Nicotiana tabacum HOM05D003378 ORTHO05D003942 1.9e-44 183.0 262 43.5
Gohir.D01G215500 Gossypium hirsutum HOM05D003378 ORTHO05D003942 2.5e-44 182.6 262 42.7
Gohir.A01G225800 Gossypium hirsutum HOM05D003378 ORTHO05D003942 3.2e-44 182.2 262 42.7
TPR.G1566 Trifolium pratense HOM05D003378 ORTHO05D003942 3.2e-44 182.2 262 42.4
CsaV3_3G034100 Cucumis sativus L. HOM05D003378 ORTHO05D003942 4.2e-44 181.8 262 43.5
Nitab4.5_0000652g0220 Nicotiana tabacum HOM05D003378 ORTHO05D003942 4.2e-44 181.8 262 43.1
Oeu015017.1 Olea europaea HOM05D003378 ORTHO05D003942 4.2e-44 181.8 257 43.2
Potri.006G097600 Populus trichocarpa HOM05D003378 ORTHO05D003942 4.2e-44 181.8 262 42.7
Psat3g130760 Pisum sativum HOM05D003378 ORTHO05D003942 7.2e-44 181.0 262 42.0
Cpa.g.sc163.3 Carica papaya HOM05D003378 ORTHO05D003942 1.2e-43 180.3 262 42.4
VMungo0331G1068 Vigna mungo HOM05D003378 ORTHO05D003942 1.2e-43 180.3 259 43.2
GSVIVG01033998001 Vitis vinifera HOM05D003378 ORTHO05D003942 1.2e-43 180.3 262 42.4
Hund22726 Selenicereus undatus HOM05D003378 ORTHO05D003942 1.6e-43 179.9 243 44.9
Cc06_g01590 Coffea canephora HOM05D003378 ORTHO05D003942 2.1e-43 179.5 262 42.4
Medtr7g067340 Medicago truncatula HOM05D003378 ORTHO05D003942 2.1e-43 179.5 262 41.6
Actinidia13774 Actinidia chinensis HOM05D003378 ORTHO05D003942 2.7e-43 179.1 262 42.4
Ciclev10011473m.g Citrus clementina HOM05D003378 ORTHO05D003942 2.7e-43 179.1 262 43.1
Haze_20961 Corylus avellana HOM05D003378 ORTHO05D003942 3.6e-43 178.7 270 41.9
arahy.Tifrunner.gnm1.ann1.FDLX2Z Arachis hypogaea HOM05D003378 ORTHO05D003942 6.1e-43 177.9 262 42.4
Thecc.05G020500 Theobroma cacao HOM05D003378 ORTHO05D003942 6.1e-43 177.9 262 42.4
vmacro22553 Vaccinium macrocarpon HOM05D003378 ORTHO05D003942 6.1e-43 177.9 262 42.0
Manes.08G089250 Manihot esculenta HOM05D003378 ORTHO05D003942 8.0e-43 177.6 262 42.0
Sed0023271 Sechium edule HOM05D003378 ORTHO05D003942 8.0e-43 177.6 262 42.4
Glyma.18G197600 Glycine max HOM05D003378 ORTHO05D003942 1.0e-42 177.2 262 42.4
SalBow4G1026 Salvia bowleyana HOM05D003378 ORTHO05D003942 1.4e-42 176.8 262 41.2
SalBow4G2524 Salvia bowleyana HOM05D003378 ORTHO05D003942 1.4e-42 176.8 262 41.2
CiPaw.10G154700 Carya illinoinensis HOM05D003378 ORTHO05D003942 1.8e-42 176.4 264 41.3
Sabra06G0075100 Salix brachista HOM05D003378 ORTHO05D003942 2.3e-42 176.0 262 41.2
Atru.chr8.2207 Acer truncatum HOM05D003378 ORTHO05D003942 3.0e-42 175.6 254 42.9
TAR369G0131 Trochodendron aralioides HOM05D003378 ORTHO05D003942 3.0e-42 175.6 262 42.7
Lj1g0014660 Lotus japonicus HOM05D003378 ORTHO05D003942 5.2e-42 174.9 262 41.2
Solyc10g085100.2 Solanum lycopersicum HOM05D003378 ORTHO05D003942 5.2e-42 174.9 264 41.7
Sopen10g034560 Solanum pennellii HOM05D003378 ORTHO05D003942 5.2e-42 174.9 264 41.7
arahy.Tifrunner.gnm1.ann1.EK5UG7 Arachis hypogaea HOM05D003378 ORTHO05D003942 8.8e-42 174.1 262 42.0
CSS0046394 Camellia sinensis var. sinensis HOM05D003378 ORTHO05D003942 1.2e-41 173.7 262 41.6
MSTRG.19023 Avicennia marina HOM05D003378 ORTHO05D003942 1.5e-41 173.3 262 40.8
Eucgr.A00516 Eucalyptus grandis HOM05D003378 ORTHO05D003942 1.5e-41 173.3 261 41.4
Sed0002007 Sechium edule HOM05D003378 ORTHO05D003942 1.5e-41 173.3 262 42.0
PGSC0003DMG400011091 Solanum tuberosum HOM05D003378 ORTHO05D003942 1.5e-41 173.3 264 41.3
Oeu030526.1 Olea europaea HOM05D003378 ORTHO05D003942 2.0e-41 172.9 279 39.8
PGSC0003DMG400020317 Solanum tuberosum HOM05D003378 ORTHO05D003942 2.0e-41 172.9 262 40.5
Lalb_Chr03g0043071 Lupinus albus HOM05D003378 ORTHO05D003942 3.4e-41 172.2 262 41.2
Migut.J00201 Erythranthe guttata HOM05D003378 ORTHO05D003942 4.4e-41 171.8 260 40.4
HanXRQChr10g0287061 Helianthus annuus HOM05D003378 ORTHO05D003942 5.7e-41 171.4 254 41.3
Solyc09g014300.3 Solanum lycopersicum HOM05D003378 ORTHO05D003942 7.5e-41 171.0 262 41.2
Sopen09g007150 Solanum pennellii HOM05D003378 ORTHO05D003942 7.5e-41 171.0 262 41.2
CAN.G1297.6 Capsicum annuum HOM05D003378 ORTHO05D003942 9.7e-41 170.6 254 42.1
DCAR_028819 Daucus carota HOM05D003378 ORTHO05D003942 9.7e-41 170.6 261 41.0
Manes.09G103000 Manihot esculenta HOM05D003378 ORTHO05D003942 9.7e-41 170.6 244 43.0
Sc01g0006660 Simmondsia chinensis HOM05D003378 ORTHO05D003942 9.7e-41 170.6 262 40.1
Gohir.A04G088800 Gossypium hirsutum HOM05D003378 ORTHO05D003942 1.3e-40 170.2 262 39.7
Potri.016G112600 Populus trichocarpa HOM05D003378 ORTHO05D003942 1.3e-40 170.2 262 40.1
Aqoxy2G00958 Aquilegia oxysepala HOM05D003378 ORTHO05D003942 1.7e-40 169.9 262 39.7
Lalb_Chr13g0291251 Lupinus albus HOM05D003378 ORTHO05D003942 1.7e-40 169.9 261 40.6
SalBow5G3819 Salvia bowleyana HOM05D003378 ORTHO05D003942 1.7e-40 169.9 263 39.2
SalBow5G4142 Salvia bowleyana HOM05D003378 ORTHO05D003942 1.7e-40 169.9 263 39.2
CAN.G355.3 Capsicum annuum HOM05D003378 ORTHO05D003942 3.7e-40 168.7 262 40.1
Phvul.008G106900 Phaseolus vulgaris HOM05D003378 ORTHO05D003942 3.7e-40 168.7 262 40.5
unitig_88.g27657 Utricularia gibba HOM05D003378 ORTHO05D003942 3.7e-40 168.7 262 39.3
Ah.02g114930 Amaranthus hybridus HOM05D003378 ORTHO05D003942 4.8e-40 168.3 262 40.8
CSS0025489 Camellia sinensis var. sinensis HOM05D003378 ORTHO05D003942 4.8e-40 168.3 262 40.1
Nitab4.5_0004030g0030 Nicotiana tabacum HOM05D003378 ORTHO05D003942 4.8e-40 168.3 262 40.1
Sabra16G0108300 Salix brachista HOM05D003378 ORTHO05D003942 6.3e-40 167.9 262 40.5
ECA247G2610 Erigeron canadensis HOM05D003378 ORTHO05D003942 1.4e-39 166.8 254 40.6
MBI14_g04426_MAGBIO Magnolia biondii HOM05D003378 ORTHO05D003942 1.4e-39 166.8 260 40.8
Lsat_1_v5_gn_9_36000 Lactuca sativa HOM05D003378 ORTHO05D003942 1.8e-39 166.4 258 40.3
MD04G1148000 Malus domestica HOM05D003378 ORTHO05D003942 2.4e-39 166.0 264 40.2
THA.LOC104827042 Tarenaya hassleriana HOM05D003378 ORTHO05D003942 2.4e-39 166.0 262 40.1
unitig_0.g1457 Utricularia gibba HOM05D003378 ORTHO05D003942 2.4e-39 166.0 262 38.9
EL10Ac5g11530 Beta vulgaris HOM05D003378 ORTHO05D003942 3.1e-39 165.6 262 40.5
Nitab4.5_0000008g0880 Nicotiana tabacum HOM05D003378 ORTHO05D003942 4.1e-39 165.2 262 39.7
BcaC06g31965 Brassica carinata HOM05D003378 ORTHO05D003942 5.3e-39 164.9 226 44.2
AUR62025812 Chenopodium quinoa HOM05D003378 ORTHO05D003942 7.0e-39 164.5 262 40.8
Prupe.6G271800 Prunus persica HOM05D003378 ORTHO05D003942 7.0e-39 164.5 264 40.2
THA.LOC104823284 Tarenaya hassleriana HOM05D003378 ORTHO05D003942 7.0e-39 164.5 262 40.1
AUR62020689 Chenopodium quinoa HOM05D003378 ORTHO05D003942 9.1e-39 164.1 262 40.8
MD12G1161400 Malus domestica HOM05D003378 ORTHO05D003942 9.1e-39 164.1 264 39.8
Actinidia05349 Actinidia chinensis HOM05D003378 ORTHO05D003942 1.2e-38 163.7 261 39.8
CANSAT35G1853 Cannabis sativa HOM05D003378 ORTHO05D003942 2.0e-38 162.9 263 39.9
Actinidia01107 Actinidia chinensis HOM05D003378 ORTHO05D003942 2.7e-38 162.5 261 39.5
PGR031G3689 Punica granatum HOM05D003378 ORTHO05D003942 3.5e-38 162.2 297 37.4
Peaxi162Scf00141g00615 Petunia axillaris HOM05D003378 ORTHO05D003942 7.7e-38 161.0 261 39.1
Lj3C956T2 Lonicera japonica HOM05D003378 ORTHO05D003942 3.8e-37 158.7 261 37.9
Carub.0006s0067 Capsella rubella HOM05D003378 ORTHO05D003942 5.0e-37 158.3 262 38.5
Migut.L01997 Erythranthe guttata HOM05D003378 ORTHO05D003942 5.0e-37 158.3 252 39.7
CARHR211550 Cardamine hirsuta HOM05D003378 ORTHO05D003942 8.5e-37 157.5 261 38.7
Thhalv10013276m.g Eutrema salsugineum HOM05D003378 ORTHO05D003942 1.5e-36 156.8 262 38.5
FvH4_6g11930 Fragaria vesca HOM05D003378 ORTHO05D003942 1.5e-36 156.8 264 38.6
FAN14G4021 Fragaria x ananassa HOM05D003378 ORTHO05D003942 1.5e-36 156.8 264 38.6
FAN14G4776 Fragaria x ananassa HOM05D003378 ORTHO05D003942 1.5e-36 156.8 264 38.6
Os07g0100300 Oryza sativa ssp. japonica HOM05D003378 ORTHO05D003942 1.5e-36 156.8 257 38.5
Sp6g40570 Schrenkiella parvula HOM05D003378 ORTHO05D003942 1.5e-36 156.8 262 38.5
Gohir.D04G129200 Gossypium hirsutum HOM05D003378 ORTHO05D003942 3.2e-36 155.6 248 39.9
unitig_27.g24826 Utricularia gibba HOM05D003378 ORTHO05D003942 4.2e-36 155.2 257 38.5
AL6G10970 Arabidopsis lyrata HOM05D003378 ORTHO05D003942 5.5e-36 154.8 262 38.2
FAN09G0987 Fragaria x ananassa HOM05D003378 ORTHO05D003942 5.5e-36 154.8 264 38.3
BcaC06g31967 Brassica carinata HOM05D003378 ORTHO05D003942 9.4e-36 154.1 263 38.0
FAN02G2254 Fragaria x ananassa HOM05D003378 ORTHO05D003942 1.2e-35 153.7 264 38.3
AT5G01220 Arabidopsis thaliana HOM05D003378 ORTHO05D003942 1.6e-35 153.3 261 37.9
FAN05G4401 Fragaria x ananassa HOM05D003378 ORTHO05D003942 1.6e-35 153.3 264 38.3
RcHm_v2.0_Chr3g0463701 Rosa chinensis HOM05D003378 ORTHO05D003942 2.1e-35 152.9 264 37.9
vmacro08599 Vaccinium macrocarpon HOM05D003378 ORTHO05D003942 2.7e-35 152.5 262 38.5
HanXRQChr11g0329601 Helianthus annuus HOM05D003378 ORTHO05D003942 3.6e-35 152.1 254 37.4
Lsat_1_v5_gn_5_155081 Lactuca sativa HOM05D003378 ORTHO05D003942 4.7e-35 151.8 254 37.4
HPP92_019420 Vanilla planifolia HOM05D003378 ORTHO05D003942 8.0e-35 151.0 262 37.8
Zm00001eb297970 Zea mays HOM05D003378 ORTHO05D003942 8.0e-35 151.0 254 38.6
C03p00550 Brassica napus HOM05D003378 ORTHO05D003942 1.4e-34 150.2 263 37.3
PSO339G6012 Papaver somniferum HOM05D003378 ORTHO05D003942 1.4e-34 150.2 257 37.4
PSO801G0661 Papaver somniferum HOM05D003378 ORTHO05D003942 1.4e-34 150.2 257 37.4
Rhsim05G0206900 Rhododendron simsii HOM05D003378 ORTHO05D003942 1.8e-34 149.8 238 42.0
Aa31LG1G22850 Aethionema arabicum HOM05D003378 ORTHO05D003942 1.5e-33 146.7 269 37.5
BcaNung02769 Brassica carinata HOM05D003378 ORTHO05D003942 1.5e-33 146.7 260 36.9
SGA_v2.0_scaffold85G26755 Striga asiatica HOM05D003378 ORTHO05D003942 2.6e-33 146.0 260 36.5
ECA248G0513 Erigeron canadensis HOM05D003378 ORTHO05D003942 5.7e-33 144.8 254 35.8
Zm00001eb335670 Zea mays HOM05D003378 ORTHO05D003942 5.7e-33 144.8 262 35.1
TWI53G0359 Tripterygium wilfordii HOM05D003378 ORTHO05D003942 2.8e-32 142.5 235 37.9
Os01g0142300 Oryza sativa ssp. japonica HOM05D003378 ORTHO05D003942 3.7e-32 142.1 262 34.7
Gorai.012G112200 Gossypium raimondii HOM05D003378 ORTHO05D003942 1.8e-31 139.8 235 37.0
A10p33660 Brassica napus HOM05D003378 ORTHO05D003942 2.4e-31 139.4 268 35.8
DCAR_024027 Daucus carota HOM05D003378 ORTHO05D003942 7.0e-31 137.9 262 36.6
A03p00390 Brassica napus HOM05D003378 ORTHO05D003942 1.6e-30 136.7 282 35.1
BraA03t09430Z Brassica rapa HOM05D003378 ORTHO05D003942 1.6e-30 136.7 282 35.1
SEGI_03332 Sequoiadendron giganteum HOM05D003378 ORTHO05D003942 2.0e-30 136.3 255 34.5
BolC3t12621H Brassica oleracea HOM05D003378 ORTHO05D003942 5.9e-30 134.8 269 34.9
CDE02G3708 Ceratophyllum demersum HOM05D003378 ORTHO05D003942 5.9e-30 134.8 263 35.0
HPP92_012629 Vanilla planifolia HOM05D003378 ORTHO05D003942 2.3e-29 132.9 246 36.6
SGA_v2.0_scaffold106G30519 Striga asiatica HOM05D003378 ORTHO05D003942 1.1e-28 130.6 254 34.6
Actinidia29123 Actinidia chinensis HOM05D003378 ORTHO05D003942 1.5e-28 130.2 81 77.8
Dinv14534 Davidia involucrata HOM05D003378 ORTHO05D003942 3.3e-28 129.0 81 81.5
ATR0618G034 Amborella trichopoda HOM05D003378 ORTHO05D003942 1.0e-26 124.0 81 74.1
C09p74570 Brassica napus HOM05D003378 ORTHO05D003942 2.3e-26 122.9 260 34.2
BolC9t60189H Brassica oleracea HOM05D003378 ORTHO05D003942 2.3e-26 122.9 260 34.2
BcaB01g06094 Brassica carinata HOM05D003378 ORTHO05D003942 1.5e-25 120.2 236 33.1
Pp3c15_4410 Physcomitrium patens HOM05D003378 ORTHO05D003942 1.5e-25 120.2 253 30.8
Mapoly0129s0040 Marchantia polymorpha HOM05D003378 ORTHO05D003942 4.4e-25 118.6 249 31.3
Os03g0265100 Oryza sativa ssp. japonica HOM05D003378 ORTHO05D003942 2.8e-24 115.9 81 64.2
Pp3c9_8520 Physcomitrium patens HOM05D003378 ORTHO05D003942 3.7e-24 115.5 243 30.9
Zm00001eb011720 Zea mays HOM05D003378 ORTHO05D003942 4.9e-24 115.2 81 67.9
HanXRQChr04g0127691 Helianthus annuus HOM05D003378 ORTHO05D003942 4.1e-23 112.1 81 64.2
TPR.G20880 Trifolium pratense HOM05D003378 ORTHO05D003942 7.0e-23 111.3 81 71.6
Rhsim04G0166600 Rhododendron simsii HOM05D003378 ORTHO05D003942 1.6e-22 110.2 270 33.3
AagrBONN_evm.TU.Sc2ySwM_228.713 Anthoceros agrestis HOM05D003378 ORTHO05D003942 2.0e-22 109.8 81 64.2
SMO118G0052 Selaginella moellendorffii HOM05D003378 ORTHO05D003942 5.9e-22 108.2 254 28.7
CBR_g3329 Chara braunii HOM05D003378 ORTHO05D003942 1.8e-18 96.7 81 55.6
TPR.G1586 Trifolium pratense HOM05D003378 ORTHO05D003942 8.9e-18 94.4 71 62.0
TAR623G0363 Trochodendron aralioides HOM05D003378 ORTHO05D003942 7.5e-17 91.3 63 69.8
TPR.G13200 Trifolium pratense HOM05D003378 ORTHO05D003942 7.0e-15 84.7 54 77.8
Cre01.g038550 Chlamydomonas reinhardtii HOM05D003378 ORTHO05D003942 8.6e-13 77.8 82 48.8
Cre16.g689150 Chlamydomonas reinhardtii HOM05D003378 ORTHO05D003942 9.8e-09 64.3 79 43.0
Medtr4g015250 Medicago truncatula HOM05D003378 ORTHO05D003942 3.7e-08 62.4 34 73.5
PRCOL_00001337 Prasinoderma coloniale HOM05D003378 ORTHO05D003942 2.4e-07 59.7 73 43.8


User provided reference genes

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