Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G15966 Trifolium pratense HOM05D007705 ORTHO05D009720 2.1e-36 155.2 80 100.0
Medtr8g031010 Medicago truncatula HOM05D007705 ORTHO05D009720 8.5e-30 133.3 80 83.8
arahy.Tifrunner.gnm1.ann1.SPA1YZ Arachis hypogaea HOM05D007705 ORTHO05D009720 1.6e-28 129.0 80 78.8
arahy.Tifrunner.gnm1.ann1.P4N769 Arachis hypogaea HOM05D007705 ORTHO05D009720 2.1e-28 128.6 80 78.8
Phvul.010G097400 Phaseolus vulgaris HOM05D007705 ORTHO05D009720 4.6e-28 127.5 80 80.0
Glyma.03G010900 Glycine max HOM05D007705 ORTHO05D009720 7.9e-28 126.7 80 77.5
Lj3g0020568 Lotus japonicus HOM05D007705 ORTHO05D009720 1.0e-27 126.3 80 77.5
Lalb_Chr17g0339761 Lupinus albus HOM05D007705 ORTHO05D009720 3.0e-27 124.8 80 76.2
arahy.Tifrunner.gnm1.ann1.UQ99Y2 Arachis hypogaea HOM05D007705 ORTHO05D009720 4.1e-24 114.4 81 70.4
Sed0019596 Sechium edule HOM05D007705 ORTHO05D009720 1.9e-21 105.5 80 65.0
Glyma.18G231800 Glycine max HOM05D007705 ORTHO05D009720 1.2e-20 102.8 77 64.9
arahy.Tifrunner.gnm1.ann1.1PM303 Arachis hypogaea HOM05D007705 ORTHO05D009720 1.6e-20 102.4 66 74.2
CiPaw.01G059800 Carya illinoinensis HOM05D007705 ORTHO05D009720 1.6e-20 102.4 80 66.2
CANSAT56G1956 Cannabis sativa HOM05D007705 ORTHO05D009720 4.7e-20 100.9 75 62.7
Cpa.g.sc18.244 Carica papaya HOM05D007705 ORTHO05D009720 4.7e-20 100.9 72 69.4
arahy.Tifrunner.gnm1.ann1.ELVS11 Arachis hypogaea HOM05D007705 ORTHO05D009720 6.1e-20 100.5 77 63.6
FvH4_7g14160 Fragaria vesca HOM05D007705 ORTHO05D009720 7.9e-20 100.1 79 62.0
FAN03G0317 Fragaria x ananassa HOM05D007705 ORTHO05D009720 7.9e-20 100.1 79 62.0
FAN06G1915 Fragaria x ananassa HOM05D007705 ORTHO05D009720 7.9e-20 100.1 79 62.0
FAN10G2029 Fragaria x ananassa HOM05D007705 ORTHO05D009720 7.9e-20 100.1 79 62.0
Sed0007089 Sechium edule HOM05D007705 ORTHO05D009720 1.4e-19 99.4 80 62.5
ClCG05G001590 Citrullus lanatus HOM05D007705 ORTHO05D009720 2.3e-19 98.6 80 62.5
RcHm_v2.0_Chr1g0354811 Rosa chinensis HOM05D007705 ORTHO05D009720 2.3e-19 98.6 79 64.6
Duzib133G1093 Durio zibethinus HOM05D007705 ORTHO05D009720 3.0e-19 98.2 77 63.6
Atru.chr5.465 Acer truncatum HOM05D007705 ORTHO05D009720 3.9e-19 97.8 79 63.3
Ciclev10023145m.g Citrus clementina HOM05D007705 ORTHO05D009720 3.9e-19 97.8 80 63.8
VMungo0331G1758 Vigna mungo HOM05D007705 ORTHO05D009720 3.9e-19 97.8 135 45.9
Nn1g01504 Nelumbo nucifera HOM05D007705 ORTHO05D009720 5.1e-19 97.4 77 66.2
arahy.Tifrunner.gnm1.ann1.5FJ7GX Arachis hypogaea HOM05D007705 ORTHO05D009720 8.8e-19 96.7 77 61.0
FAN10G0144 Fragaria x ananassa HOM05D003942 ORTHO05D004527 8.8e-19 96.7 78 60.3
CsaV3_3G008980 Cucumis sativus L. HOM05D007705 ORTHO05D009720 1.1e-18 96.3 73 61.6
MELO3C006116.2 Cucumis melo HOM05D007705 ORTHO05D009720 1.5e-18 95.9 73 61.6
Thecc.01G360600 Theobroma cacao HOM05D007705 ORTHO05D009720 1.5e-18 95.9 78 60.3
Gohir.A08G130900 Gossypium hirsutum HOM05D007705 ORTHO05D009720 3.3e-18 94.7 78 59.0
RcHm_v2.0_Chr1g0355061 Rosa chinensis HOM05D007705 ORTHO05D009720 4.4e-18 94.4 79 60.8
TWI14G1368 Tripterygium wilfordii HOM05D007705 ORTHO05D009720 4.4e-18 94.4 72 59.7
Gohir.D08G152400 Gossypium hirsutum HOM05D007705 ORTHO05D009720 5.7e-18 94.0 78 59.0
MSTRG.28220 Avicennia marina HOM05D007705 ORTHO05D009720 9.7e-18 93.2 77 61.0
PGR031G2440 Punica granatum HOM05D007705 ORTHO05D009720 9.7e-18 93.2 78 56.4
MD07G1139100 Malus domestica HOM05D007705 ORTHO05D009720 2.2e-17 92.0 76 63.2
Eucgr.D02283 Eucalyptus grandis HOM05D007705 ORTHO05D009720 3.7e-17 91.3 64 65.6
Peaxi162Scf00008g02124 Petunia axillaris HOM05D007705 ORTHO05D009720 4.8e-17 90.9 69 63.8
Gorai.004G158300 Gossypium raimondii HOM05D007705 ORTHO05D009720 8.2e-17 90.1 78 59.0
Manes.01G258400 Manihot esculenta HOM05D007705 ORTHO05D009720 8.2e-17 90.1 58 70.7
Cc02_g37860 Coffea canephora HOM05D007705 ORTHO05D009720 1.1e-16 89.7 79 58.2
Prupe.2G168000 Prunus persica HOM05D007705 ORTHO05D009720 1.1e-16 89.7 76 61.8
Lsat_1_v5_gn_4_36241 Lactuca sativa HOM05D007705 ORTHO05D009720 2.4e-16 88.6 74 62.2
Potri.014G082800 Populus trichocarpa HOM05D007705 ORTHO05D009720 2.4e-16 88.6 61 67.2
THA.LOC104801441 Tarenaya hassleriana HOM05D007705 ORTHO05D009720 2.4e-16 88.6 72 56.9
Sc23g0003000 Simmondsia chinensis HOM05D007705 ORTHO05D009720 3.1e-16 88.2 58 67.2
CSS0048404 Camellia sinensis var. sinensis HOM05D007705 ORTHO05D009720 4.1e-16 87.8 56 71.4
Rhsim07G0016500 Rhododendron simsii HOM05D007705 ORTHO05D009720 5.3e-16 87.4 73 57.5
SalBow5G0166 Salvia bowleyana HOM05D007705 ORTHO05D009720 9.1e-16 86.7 66 62.1
Carub.0006s3673 Capsella rubella HOM05D007705 ORTHO05D009720 1.2e-15 86.3 73 58.9
Aqoxy2G01039 Aquilegia oxysepala HOM05D007705 ORTHO05D009720 1.6e-15 85.9 77 57.1
GSVIVG01026894001 Vitis vinifera HOM05D007705 ORTHO05D009720 1.6e-15 85.9 64 65.6
AL6G52940 Arabidopsis lyrata HOM05D007705 ORTHO05D009720 2.6e-15 85.1 58 65.5
CAN.G116.6 Capsicum annuum HOM05D007705 ORTHO05D009720 2.6e-15 85.1 68 60.3
AT4G00530 Arabidopsis thaliana HOM05D007705 ORTHO05D009720 3.5e-15 84.7 64 60.9
Aa31LG1G11090 Aethionema arabicum HOM05D007705 ORTHO05D009720 5.9e-15 84.0 63 60.3
CDE02G0341 Ceratophyllum demersum HOM05D007705 ORTHO05D009720 5.9e-15 84.0 60 68.3
Migut.N01439 Erythranthe guttata HOM05D007705 ORTHO05D009720 7.7e-15 83.6 83 51.8
Thhalv10009285m.g Eutrema salsugineum HOM05D007705 ORTHO05D009720 7.7e-15 83.6 60 63.3
Hund16929 Selenicereus undatus HOM05D007705 ORTHO05D009720 7.7e-15 83.6 79 53.2
PSO478G4887 Papaver somniferum HOM05D007705 ORTHO05D009720 1.3e-14 82.8 60 61.7
FAN01G1472 Fragaria x ananassa HOM05D007705 ORTHO05D009720 2.2e-14 82.0 115 42.6
Sp1g00580 Schrenkiella parvula HOM05D007705 ORTHO05D009720 2.2e-14 82.0 60 63.3
PGSC0003DMG400010270 Solanum tuberosum HOM05D007705 ORTHO05D009720 2.2e-14 82.0 66 60.6
AT1G01725 Arabidopsis thaliana HOM05D007705 ORTHO05D009720 3.8e-14 81.3 58 65.5
EL10Ac1g00428 Beta vulgaris HOM05D003942 ORTHO05D004527 3.8e-14 81.3 63 55.6
CARHR248690 Cardamine hirsuta HOM05D007705 ORTHO05D009720 3.8e-14 81.3 64 59.4
AUR62004343 Chenopodium quinoa HOM05D007705 ORTHO05D009720 3.8e-14 81.3 72 51.4
HanXRQChr16g0522821 Helianthus annuus HOM05D007705 ORTHO05D009720 5.0e-14 80.9 78 53.8
Ah.05g180700 Amaranthus hybridus HOM05D007705 ORTHO05D009720 6.5e-14 80.5 63 54.0
CARHR000600 Cardamine hirsuta HOM05D007705 ORTHO05D009720 1.1e-13 79.7 58 62.1
FAN06G1047 Fragaria x ananassa HOM05D007705 ORTHO05D009720 1.1e-13 79.7 109 45.0
ATR0680G396 Amborella trichopoda HOM05D007705 ORTHO05D009720 1.9e-13 79.0 62 62.9
BcaB03g13609 Brassica carinata HOM05D007705 ORTHO05D009720 3.2e-13 78.2 60 58.3
A10p00310 Brassica napus HOM05D007705 ORTHO05D009720 4.2e-13 77.8 57 61.4
C05p00320 Brassica napus HOM05D007705 ORTHO05D009720 4.2e-13 77.8 57 61.4
BolC5t28822H Brassica oleracea HOM05D007705 ORTHO05D009720 4.2e-13 77.8 57 61.4
BraA10t42308Z Brassica rapa HOM05D007705 ORTHO05D009720 4.2e-13 77.8 57 61.4
RcHm_v2.0_Chr4g0404631 Rosa chinensis HOM05D007705 ORTHO05D009720 4.2e-13 77.8 72 54.2
Sabra14G0060000 Salix brachista HOM05D007705 ORTHO05D009720 1.0e-11 73.2 81 48.1
SHI13438 Sapria himalayana HOM05D007705 ORTHO05D009720 2.3e-11 72.0 61 52.5
unitig_22.g6810 Utricularia gibba HOM05D007705 ORTHO05D009720 3.0e-11 71.6 78 51.3
MBI18_g25521_MAGBIO Magnolia biondii HOM05D007705 ORTHO05D009720 6.7e-11 70.5 70 52.9
FAN10G1187 Fragaria x ananassa HOM05D007705 ORTHO05D009720 2.0e-10 68.9 57 57.9
ECA234G1137 Erigeron canadensis HOM05D003942 ORTHO05D004527 2.6e-10 68.6 50 60.0
Nitab4.5_0007064g0050 Nicotiana tabacum HOM05D007705 ORTHO05D009720 4.4e-10 67.8 64 50.0
COL.COLO4_12699 Corchorus olitorius HOM05D007705 ORTHO05D009720 1.7e-09 65.9 149 32.9
Nitab4.5_0000386g0120 Nicotiana tabacum HOM05D007705 ORTHO05D009720 4.8e-09 64.3 61 50.8
Hma1.2p1_0001F.1_g001390 Hydrangea macrophylla HOM05D007705 ORTHO05D009720 6.3e-09 63.9 38 76.3
FAN28G2457 Fragaria x ananassa HOM05D007705 ORTHO05D009720 1.2e-07 59.7 42 64.3


User provided reference genes

Program Settings