Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.05G238700 Glycine max HOM05D001486 ORTHO05D003845 5.9e-17 89.7 44 100.0
TPR.G15892 Trifolium pratense HOM05D001486 ORTHO05D003845 5.9e-17 89.7 44 100.0
TPR.G39980 Trifolium pratense HOM05D001486 ORTHO05D003845 5.9e-17 89.7 44 100.0
Medtr8g105270 Medicago truncatula HOM05D001486 ORTHO05D003845 7.7e-17 89.4 44 97.7
Ca_17256_v3 Cicer arietinum L. HOM05D001486 ORTHO05D003845 1.7e-16 88.2 44 97.7
Ca_17278_v3 Cicer arietinum L. HOM05D001486 ORTHO05D003845 1.7e-16 88.2 44 97.7
Phvul.002G321100 Phaseolus vulgaris HOM05D001486 ORTHO05D003845 2.9e-16 87.4 44 97.7
Phvul.003G019400 Phaseolus vulgaris HOM05D001486 ORTHO05D003845 2.9e-16 87.4 44 97.7
VMungo0251G2427 Vigna mungo HOM05D001486 ORTHO05D003845 2.9e-16 87.4 44 97.7
Psat6g046320 Pisum sativum HOM05D001486 ORTHO05D003845 6.5e-16 86.3 44 95.5
Lj4g0000437 Lotus japonicus HOM05D001486 ORTHO05D003845 8.5e-16 85.9 44 95.5
arahy.Tifrunner.gnm1.ann1.56F275 Arachis hypogaea HOM05D001486 ORTHO05D003845 1.1e-15 85.5 44 95.5
arahy.Tifrunner.gnm1.ann1.JC79MH Arachis hypogaea HOM05D001486 ORTHO05D003845 1.1e-15 85.5 44 95.5
Psat7g008000 Pisum sativum HOM05D001486 ORTHO05D003845 1.1e-15 85.5 44 93.2
Glyma.02G085000 Glycine max HOM05D001486 ORTHO05D003845 1.5e-15 85.1 44 95.5
Lalb_Chr04g0258641 Lupinus albus HOM05D001486 ORTHO05D003845 2.5e-15 84.3 44 95.5
CiPaw.06G051700 Carya illinoinensis HOM05D001486 ORTHO05D003845 3.2e-15 84.0 44 93.2
Ca_12547_v3 Cicer arietinum L. HOM05D001486 ORTHO05D003845 3.2e-15 84.0 44 93.2
Lj2g0001507 Lotus japonicus HOM05D001486 ORTHO05D003845 3.2e-15 84.0 44 95.5
Lalb_Chr16g0387531 Lupinus albus HOM05D001486 ORTHO05D003845 3.2e-15 84.0 44 93.2
Medtr1g032110 Medicago truncatula HOM05D001486 ORTHO05D003845 3.2e-15 84.0 44 93.2
Ciclev10014409m.g Citrus clementina HOM05D001486 ORTHO05D003845 5.5e-15 83.2 44 90.9
Ah.03g137420 Amaranthus hybridus HOM05D001486 ORTHO05D003845 9.4e-15 82.4 44 90.9
COL.COLO4_16586 Corchorus olitorius HOM05D001486 ORTHO05D003845 9.4e-15 82.4 44 90.9
Haze_10882 Corylus avellana HOM05D001486 ORTHO05D003845 9.4e-15 82.4 44 90.9
Gohir.D04G186000 Gossypium hirsutum HOM05D001486 ORTHO05D003845 9.4e-15 82.4 44 90.9
Gorai.012G182400 Gossypium raimondii HOM05D001486 ORTHO05D003845 9.4e-15 82.4 44 90.9
VMungo1215G0637 Vigna mungo HOM05D001486 ORTHO05D003845 9.4e-15 82.4 42 97.6
EL10Ac6g14120 Beta vulgaris HOM05D001486 ORTHO05D003845 1.2e-14 82.0 43 93.0
CSS0002688 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D003845 1.2e-14 82.0 44 90.9
CSS0045072 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D003845 1.2e-14 82.0 44 90.9
Dinv07731 Davidia involucrata HOM05D001486 ORTHO05D003845 1.2e-14 82.0 44 90.9
Duzib248G0925 Durio zibethinus HOM05D001486 ORTHO05D003845 1.2e-14 82.0 44 90.9
Duzib251G0612 Durio zibethinus HOM05D001486 ORTHO05D003845 1.2e-14 82.0 44 90.9
Lalb_Chr10g0095731 Lupinus albus HOM05D001486 ORTHO05D003845 1.6e-14 81.6 44 90.9
vmacro10692 Vaccinium macrocarpon HOM05D001486 ORTHO05D003845 1.6e-14 81.6 44 90.9
Atru.chr11.926 Acer truncatum HOM05D001486 ORTHO05D003845 2.1e-14 81.3 44 88.6
Gohir.A04G142700 Gossypium hirsutum HOM05D001486 ORTHO05D003845 2.1e-14 81.3 44 88.6
Lsat_1_v5_gn_3_53381 Lactuca sativa HOM05D001486 ORTHO05D003845 2.1e-14 81.3 44 88.6
Manes.15G134100 Manihot esculenta HOM05D001486 ORTHO05D003845 2.1e-14 81.3 44 90.9
Manes.17G083800 Manihot esculenta HOM05D001486 ORTHO05D003845 2.1e-14 81.3 44 90.9
TAR629G1492 Trochodendron aralioides HOM05D001486 ORTHO05D003845 2.1e-14 81.3 44 88.6
CSS0024241 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D003845 2.7e-14 80.9 44 88.6
AUR62014245 Chenopodium quinoa HOM05D001486 ORTHO05D003845 2.7e-14 80.9 44 88.6
AUR62038470 Chenopodium quinoa HOM05D001486 ORTHO05D003845 2.7e-14 80.9 44 88.6
Prupe.1G333200 Prunus persica HOM05D001486 ORTHO05D003845 2.7e-14 80.9 44 88.6
Dinv10476 Davidia involucrata HOM05D001486 ORTHO05D003845 3.6e-14 80.5 44 88.6
Gohir.A01G147000 Gossypium hirsutum HOM05D001486 ORTHO05D003845 3.6e-14 80.5 44 88.6
Gohir.D01G140100 Gossypium hirsutum HOM05D001486 ORTHO05D003845 3.6e-14 80.5 44 88.6
Gorai.002G172300 Gossypium raimondii HOM05D001486 ORTHO05D003845 3.6e-14 80.5 44 88.6
HanXRQChr08g0212491 Helianthus annuus HOM05D001486 ORTHO05D003845 3.6e-14 80.5 44 88.6
Lj3C864T11 Lonicera japonica HOM05D001486 ORTHO05D003845 3.6e-14 80.5 44 88.6
Hund24926 Selenicereus undatus HOM05D001486 ORTHO05D003845 3.6e-14 80.5 44 88.6
Aa31LG2G8200 Aethionema arabicum HOM05D001486 ORTHO05D003845 4.7e-14 80.1 44 86.4
AL5G10790 Arabidopsis lyrata HOM05D001486 ORTHO05D003845 4.7e-14 80.1 44 86.4
AT2G01690 Arabidopsis thaliana HOM05D001486 ORTHO05D003845 4.7e-14 80.1 44 86.4
BcaB07g30379 Brassica carinata HOM05D001486 ORTHO05D003845 4.7e-14 80.1 44 86.4
BcaB07g30727 Brassica carinata HOM05D001486 ORTHO05D003845 4.7e-14 80.1 44 86.4
BcaC03g17068 Brassica carinata HOM05D001486 ORTHO05D003845 4.7e-14 80.1 44 86.4
BcaC04g21556 Brassica carinata HOM05D001486 ORTHO05D003845 4.7e-14 80.1 44 86.4
A02p32260 Brassica napus HOM05D001486 ORTHO05D003845 4.7e-14 80.1 44 86.4
A09p23570 Brassica napus HOM05D001486 ORTHO05D003845 4.7e-14 80.1 44 86.4
C02p49860 Brassica napus HOM05D001486 ORTHO05D003845 4.7e-14 80.1 44 86.4
C09p30410 Brassica napus HOM05D001486 ORTHO05D003845 4.7e-14 80.1 44 86.4
BolC2t11065H Brassica oleracea HOM05D001486 ORTHO05D003845 4.7e-14 80.1 44 86.4
BolC9t55904H Brassica oleracea HOM05D001486 ORTHO05D003845 4.7e-14 80.1 44 86.4
BraA02t08243Z Brassica rapa HOM05D001486 ORTHO05D003845 4.7e-14 80.1 44 86.4
BraA09t37961Z Brassica rapa HOM05D001486 ORTHO05D003845 4.7e-14 80.1 44 86.4
Cfa015023 Carpinus fangiana HOM05D001486 ORTHO05D003845 4.7e-14 80.1 44 88.6
Thhalv10003708m.g Eutrema salsugineum HOM05D001486 ORTHO05D003845 4.7e-14 80.1 44 86.4
Thecc.02G292300 Theobroma cacao HOM05D001486 ORTHO05D003845 4.7e-14 80.1 44 88.6
CAN.G3126.1 Capsicum annuum HOM05D001486 ORTHO05D003845 6.1e-14 79.7 43 90.7
CAN.G74.5 Capsicum annuum HOM05D001486 ORTHO05D003845 6.1e-14 79.7 43 90.7
HanXRQChr15g0476741 Helianthus annuus HOM05D001486 ORTHO05D003845 6.1e-14 79.7 44 88.6
Nn3g18359 Nelumbo nucifera HOM05D001486 ORTHO05D003845 6.1e-14 79.7 44 86.4
Nitab4.5_0000198g0160 Nicotiana tabacum HOM05D001486 ORTHO05D003845 6.1e-14 79.7 43 90.7
Nitab4.5_0002414g0110 Nicotiana tabacum HOM05D001486 ORTHO05D003845 6.1e-14 79.7 43 90.7
Nitab4.5_0002803g0060 Nicotiana tabacum HOM05D001486 ORTHO05D003845 6.1e-14 79.7 43 90.7
Nitab4.5_0005571g0010 Nicotiana tabacum HOM05D001486 ORTHO05D003845 6.1e-14 79.7 43 90.7
Peaxi162Scf00337g00815 Petunia axillaris HOM05D001486 ORTHO05D003845 6.1e-14 79.7 43 90.7
Peaxi162Scf00376g00836 Petunia axillaris HOM05D001486 ORTHO05D003845 6.1e-14 79.7 43 90.7
Solyc04g008010.4 Solanum lycopersicum HOM05D001486 ORTHO05D003845 6.1e-14 79.7 43 90.7
Solyc05g017860.3 Solanum lycopersicum HOM05D001486 ORTHO05D003845 6.1e-14 79.7 43 90.7
Sopen04g003150 Solanum pennellii HOM05D001486 ORTHO05D003845 6.1e-14 79.7 43 90.7
Sopen05g014620 Solanum pennellii HOM05D001486 ORTHO05D003845 6.1e-14 79.7 43 90.7
PGSC0003DMG401029470 Solanum tuberosum HOM05D001486 ORTHO05D003845 6.1e-14 79.7 43 90.7
Carub.0005s0064 Capsella rubella HOM05D001486 ORTHO05D003845 8.0e-14 79.3 44 86.4
CARHR144260 Cardamine hirsuta HOM05D001486 ORTHO05D003845 8.0e-14 79.3 44 86.4
ECA233G3229 Erigeron canadensis HOM05D001486 ORTHO05D003845 8.0e-14 79.3 44 86.4
ECA246G3923 Erigeron canadensis HOM05D001486 ORTHO05D003845 8.0e-14 79.3 44 86.4
Potri.010G106700 Populus trichocarpa HOM05D001486 ORTHO05D003845 8.0e-14 79.3 44 88.6
Sp2g13150 Schrenkiella parvula HOM05D001486 ORTHO05D003845 8.0e-14 79.3 44 86.4
CANSAT01G1659 Cannabis sativa HOM05D001486 ORTHO05D003845 1.0e-13 79.0 44 86.4
Lalb_Chr09g0330901 Lupinus albus HOM05D001486 ORTHO05D003845 1.0e-13 79.0 44 88.6
QL03p035767 Quercus lobata HOM05D001486 ORTHO05D003845 1.0e-13 79.0 44 88.6
Hund20674 Selenicereus undatus HOM05D001486 ORTHO05D003845 1.0e-13 79.0 44 86.4
SGA_v2.0_scaffold151G36774 Striga asiatica HOM05D001486 ORTHO05D003845 1.0e-13 79.0 44 86.4
THA.LOC104805083 Tarenaya hassleriana HOM05D001486 ORTHO05D003845 1.0e-13 79.0 44 86.4
CAN.G406.6 Capsicum annuum HOM05D001486 ORTHO05D003845 1.4e-13 78.6 43 88.4
ClCG07G005650 Citrullus lanatus HOM05D001486 ORTHO05D003845 1.4e-13 78.6 44 86.4
MELO3C026439.2 Cucumis melo HOM05D001486 ORTHO05D003845 1.4e-13 78.6 44 86.4
CsaV3_5G036990 Cucumis sativus L. HOM05D001486 ORTHO05D003845 1.4e-13 78.6 44 86.4
Hma1.2p1_0705F.1_g206960 Hydrangea macrophylla HOM05D001486 ORTHO05D003845 1.4e-13 78.6 44 86.4
MD13G1020500 Malus domestica HOM05D001486 ORTHO05D003845 1.4e-13 78.6 44 86.4
RcHm_v2.0_Chr4g0443071 Rosa chinensis HOM05D001486 ORTHO05D003845 1.4e-13 78.6 44 86.4
Sed0013183 Sechium edule HOM05D001486 ORTHO05D003845 1.4e-13 78.6 44 86.4
Potri.008G134600 Populus trichocarpa HOM05D001486 ORTHO05D003845 1.8e-13 78.2 44 86.4
PGR142G0042 Punica granatum HOM05D001486 ORTHO05D003845 1.8e-13 78.2 44 84.1
Sabra10G0077900 Salix brachista HOM05D001486 ORTHO05D003845 1.8e-13 78.2 44 86.4
SEGI_09588 Sequoiadendron giganteum HOM05D001486 ORTHO05D003845 1.8e-13 78.2 44 84.1
Actinidia34036 Actinidia chinensis HOM05D001486 ORTHO05D003845 2.3e-13 77.8 43 88.4
Hma1.2p1_0940F.1_g239580 Hydrangea macrophylla HOM05D001486 ORTHO05D003845 2.3e-13 77.8 44 84.1
MD16G1018900 Malus domestica HOM05D001486 ORTHO05D003845 2.3e-13 77.8 44 84.1
HanXRQChr17g0567281 Helianthus annuus HOM05D001486 ORTHO05D003845 3.0e-13 77.4 44 88.6
ATR0753G082 Amborella trichopoda HOM05D001486 ORTHO05D003845 4.0e-13 77.0 44 79.5
Aqoxy3G00010 Aquilegia oxysepala HOM05D001486 ORTHO05D003845 4.0e-13 77.0 44 84.1
DCAR_007328 Daucus carota HOM05D001486 ORTHO05D003845 4.0e-13 77.0 44 81.8
Migut.E00480 Erythranthe guttata HOM05D001486 ORTHO05D003845 4.0e-13 77.0 44 84.1
SalBow2G3384 Salvia bowleyana HOM05D001486 ORTHO05D003845 4.0e-13 77.0 44 84.1
MSTRG.7612 Avicennia marina HOM05D001486 ORTHO05D003845 5.2e-13 76.6 43 86.0
Eucgr.G02107 Eucalyptus grandis HOM05D001486 ORTHO05D003845 5.2e-13 76.6 44 81.8
MBI19_g37990_MAGBIO Magnolia biondii HOM05D001486 ORTHO05D003845 5.2e-13 76.6 44 81.8
Cc11_g07260 Coffea canephora HOM05D001486 ORTHO05D003845 6.8e-13 76.3 44 81.8
DCAR_030270 Daucus carota HOM05D001486 ORTHO05D003845 6.8e-13 76.3 44 81.8
Lsat_1_v5_gn_4_12500 Lactuca sativa HOM05D001486 ORTHO05D003845 6.8e-13 76.3 44 84.1
Duzib268G0262 Durio zibethinus HOM05D001486 ORTHO05D003845 8.8e-13 75.9 42 88.1
Sc14g0006830 Simmondsia chinensis HOM05D001486 ORTHO05D003845 8.8e-13 75.9 44 81.8
unitig_699.g19262 Utricularia gibba HOM05D001486 ORTHO05D003845 8.8e-13 75.9 44 81.8
unitig_85.g27249 Utricularia gibba HOM05D001486 ORTHO05D003845 8.8e-13 75.9 44 81.8
FvH4_4g33570 Fragaria vesca HOM05D001486 ORTHO05D003845 1.2e-12 75.5 43 83.7
FAN07G1595 Fragaria x ananassa HOM05D001486 ORTHO05D004921 1.2e-12 75.5 43 83.7
FAN12G1020 Fragaria x ananassa HOM05D001486 ORTHO05D003845 1.2e-12 75.5 43 83.7
FAN17G1742 Fragaria x ananassa HOM05D001486 ORTHO05D003845 1.2e-12 75.5 43 83.7
BcaC06g34133 Brassica carinata HOM05D001486 ORTHO05D003845 2.0e-12 74.7 44 79.5
A06p44170 Brassica napus HOM05D001486 ORTHO05D003845 2.0e-12 74.7 44 79.5
C07p32330 Brassica napus HOM05D001486 ORTHO05D003845 2.0e-12 74.7 44 79.5
BolC7t43769H Brassica oleracea HOM05D001486 ORTHO05D003845 2.0e-12 74.7 44 79.5
BraA06t27292Z Brassica rapa HOM05D001486 ORTHO05D003845 2.0e-12 74.7 44 79.5
CDE04G1077 Ceratophyllum demersum HOM05D001486 ORTHO05D003845 2.0e-12 74.7 44 79.5
Actinidia12394 Actinidia chinensis HOM05D001486 ORTHO05D004921 2.6e-12 74.3 44 84.1
FAN22G2360 Fragaria x ananassa HOM05D001486 ORTHO05D003845 3.4e-12 73.9 43 81.4
Oeu059515.2 Olea europaea HOM05D001486 ORTHO05D003845 4.4e-12 73.6 44 81.8
TAR371G0986 Trochodendron aralioides HOM05D001486 ORTHO05D003845 4.4e-12 73.6 43 83.7
GSVIVG01011664001 Vitis vinifera HOM05D001486 ORTHO05D003845 4.4e-12 73.6 44 81.8
Nn4g24361 Nelumbo nucifera HOM05D001486 ORTHO05D003845 5.7e-12 73.2 44 77.3
Oeu044012.1 Olea europaea HOM05D001486 ORTHO05D003845 5.7e-12 73.2 42 83.3
Sed0004382 Sechium edule HOM05D001486 ORTHO05D003845 5.7e-12 73.2 43 81.4
BcaC06g31283 Brassica carinata HOM05D001486 ORTHO05D003845 7.5e-12 72.8 44 77.3
Oeu031609.1 Olea europaea HOM05D001486 ORTHO05D003845 7.5e-12 72.8 42 83.3
PSO063G0325 Papaver somniferum HOM05D001486 ORTHO05D003845 9.8e-12 72.4 44 79.5
PSO782G0639 Papaver somniferum HOM05D001486 ORTHO05D003845 9.8e-12 72.4 44 79.5
Gohir.D05G309600 Gossypium hirsutum HOM05D001486 ORTHO05D003845 1.3e-11 72.0 44 77.3
Gorai.009G330200 Gossypium raimondii HOM05D001486 ORTHO05D003845 1.3e-11 72.0 44 77.3
Pp3c8_19610 Physcomitrium patens HOM05D001486 ORTHO05D003845 1.7e-11 71.6 43 83.7
Actinidia38441 Actinidia chinensis HOM05D001486 ORTHO05D003845 2.2e-11 71.2 43 81.4
Gohir.A05G308900 Gossypium hirsutum HOM05D001486 ORTHO05D003845 2.2e-11 71.2 43 79.1
Gohir.A12G152100 Gossypium hirsutum HOM05D001486 ORTHO05D003845 2.2e-11 71.2 44 79.5
MSTRG.2129 Avicennia marina HOM05D001486 ORTHO05D003845 2.8e-11 70.9 41 85.4
Sed0007618 Sechium edule HOM05D001486 ORTHO05D003845 2.8e-11 70.9 44 75.0
Lsat_1_v5_gn_8_46261 Lactuca sativa HOM05D001486 ORTHO05D003845 3.7e-11 70.5 44 79.5
THA.LOC104824128 Tarenaya hassleriana HOM05D001486 ORTHO05D003845 3.7e-11 70.5 42 83.3
Os03g0223700 Oryza sativa ssp. japonica HOM05D001486 ORTHO05D003845 8.3e-11 69.3 39 84.6
Zm00001eb009100 Zea mays HOM05D001486 ORTHO05D003845 8.3e-11 69.3 39 84.6
Zm00001eb399850 Zea mays HOM05D001486 ORTHO05D003845 8.3e-11 69.3 39 84.6
Gorai.008G168200 Gossypium raimondii HOM05D001486 ORTHO05D003845 1.1e-10 68.9 44 77.3
HPP92_020315 Vanilla planifolia HOM05D001486 ORTHO05D003845 1.1e-10 68.9 42 83.3
Pp3c7_100 Physcomitrium patens HOM05D001486 ORTHO05D003845 1.4e-10 68.6 43 81.4
Aa31LG1G250 Aethionema arabicum HOM05D001486 ORTHO05D003845 1.8e-10 68.2 44 75.0
Pp3c11_22930 Physcomitrium patens HOM05D001486 ORTHO05D003845 3.1e-10 67.4 43 79.1
AagrBONN_evm.TU.Sc2ySwM_228.2276 Anthoceros agrestis HOM05D001486 ORTHO05D003845 4.1e-10 67.0 43 76.7
MSTRG.13626 Avicennia marina HOM05D001486 ORTHO05D003845 4.1e-10 67.0 42 81.0
SHI04318 Sapria himalayana HOM05D001486 ORTHO05D003845 5.4e-10 66.6 42 78.6
Nitab4.5_0002134g0020 Nicotiana tabacum HOM05D001486 ORTHO05D003845 7.0e-10 66.2 66 57.6
SMO134G0279 Selaginella moellendorffii HOM05D001486 ORTHO05D003845 2.7e-09 64.3 42 73.8
Mapoly0092s0044 Marchantia polymorpha HOM05D001486 ORTHO05D003845 4.5e-09 63.5 40 77.5
HPP92_024794 Vanilla planifolia HOM05D001486 ORTHO05D003845 4.5e-09 63.5 41 75.6
HPP92_024797 Vanilla planifolia HOM05D001486 ORTHO05D003845 4.5e-09 63.5 41 75.6
TWI53G1320 Tripterygium wilfordii HOM05D001486 ORTHO05D003845 1.3e-08 62.0 42 66.7
TWI77G0357 Tripterygium wilfordii HOM05D001486 ORTHO05D003845 2.2e-08 61.2 42 69.0
TWI74G0058 Tripterygium wilfordii HOM05D001486 ORTHO05D003845 2.9e-08 60.8 42 69.0
CBR_g22971 Chara braunii HOM05D001486 ORTHO05D003845 9.4e-07 55.8 40 70.0
Pp3c6_9900 Physcomitrium patens HOM05D001486 ORTHO05D003845 1.2e-06 55.5 43 69.8


User provided reference genes

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