Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G1586 Trifolium pratense HOM05D003378 ORTHO05D003942 2.5e-93 345.5 182 100.0
TPR.G1566 Trifolium pratense HOM05D003378 ORTHO05D003942 3.3e-53 212.2 109 92.7
Medtr7g067340 Medicago truncatula HOM05D003378 ORTHO05D003942 2.8e-52 209.1 109 90.8
Psat3g130760 Pisum sativum HOM05D003378 ORTHO05D003942 5.2e-51 204.9 109 89.0
Ca_07617_v3 Cicer arietinum L. HOM05D003378 ORTHO05D003942 4.4e-50 201.8 109 88.1
Duzib093G0826 Durio zibethinus HOM05D003378 ORTHO05D003942 9.2e-48 194.1 109 80.7
Lalb_Chr03g0043071 Lupinus albus HOM05D003378 ORTHO05D003942 3.5e-47 192.2 109 81.7
Gorai.002G261700 Gossypium raimondii HOM05D003378 ORTHO05D003942 1.0e-46 190.7 109 78.9
Glyma.18G197600 Glycine max HOM05D003378 ORTHO05D003942 1.7e-46 189.9 109 82.6
Gohir.A01G225800 Gossypium hirsutum HOM05D003378 ORTHO05D003942 3.0e-46 189.1 109 78.9
PGR031G3689 Punica granatum HOM05D003378 ORTHO05D003942 3.9e-46 188.7 109 78.0
arahy.Tifrunner.gnm1.ann1.EK5UG7 Arachis hypogaea HOM05D003378 ORTHO05D003942 5.0e-46 188.3 109 78.0
arahy.Tifrunner.gnm1.ann1.FDLX2Z Arachis hypogaea HOM05D003378 ORTHO05D003942 5.0e-46 188.3 109 78.0
Gohir.D01G215500 Gossypium hirsutum HOM05D003378 ORTHO05D003942 6.6e-46 188.0 109 78.0
Manes.08G089250 Manihot esculenta HOM05D003378 ORTHO05D003942 6.6e-46 188.0 109 78.9
Duzib128G1405 Durio zibethinus HOM05D003378 ORTHO05D003942 3.3e-45 185.7 109 78.9
Thecc.05G020500 Theobroma cacao HOM05D003378 ORTHO05D003942 5.6e-45 184.9 109 78.0
COL.COLO4_14573 Corchorus olitorius HOM05D003378 ORTHO05D003942 7.3e-45 184.5 105 81.0
Glyma.07G146400 Glycine max HOM05D003378 ORTHO05D003942 9.5e-45 184.1 106 80.2
GSVIVG01033998001 Vitis vinifera HOM05D003378 ORTHO05D003942 9.5e-45 184.1 109 76.1
Haze_20961 Corylus avellana HOM05D003378 ORTHO05D003942 2.8e-44 182.6 105 80.0
Ciclev10011473m.g Citrus clementina HOM05D003378 ORTHO05D003942 3.6e-44 182.2 107 75.7
Potri.006G097600 Populus trichocarpa HOM05D003378 ORTHO05D003942 3.6e-44 182.2 105 78.1
Cpa.g.sc163.3 Carica papaya HOM05D003378 ORTHO05D003942 4.7e-44 181.8 109 74.3
Phvul.008G106900 Phaseolus vulgaris HOM05D003378 ORTHO05D003942 4.7e-44 181.8 106 80.2
Cfa017247 Carpinus fangiana HOM05D003378 ORTHO05D003942 6.2e-44 181.4 105 80.0
MELO3C009186.2 Cucumis melo HOM05D003378 ORTHO05D003942 6.2e-44 181.4 109 74.3
Dinv37075 Davidia involucrata HOM05D003378 ORTHO05D003942 8.1e-44 181.0 109 77.1
Actinidia05349 Actinidia chinensis HOM05D003378 ORTHO05D003942 1.1e-43 180.6 109 74.3
Sabra06G0075100 Salix brachista HOM05D003378 ORTHO05D003942 2.3e-43 179.5 105 78.1
Eucgr.A00516 Eucalyptus grandis HOM05D003378 ORTHO05D003942 3.1e-43 179.1 109 73.4
Lj2C81T6 Lonicera japonica HOM05D003378 ORTHO05D003942 4.0e-43 178.7 109 74.3
Cc06_g01590 Coffea canephora HOM05D003378 ORTHO05D003942 5.2e-43 178.3 109 75.2
Lj1g0014660 Lotus japonicus HOM05D003378 ORTHO05D003942 5.2e-43 178.3 110 78.2
CsaV3_3G034100 Cucumis sativus L. HOM05D003378 ORTHO05D003942 6.8e-43 177.9 109 73.4
CANSAT35G1853 Cannabis sativa HOM05D003378 ORTHO05D003942 8.9e-43 177.6 110 76.4
Nitab4.5_0004030g0030 Nicotiana tabacum HOM05D003378 ORTHO05D003942 8.9e-43 177.6 108 71.3
Hund22726 Selenicereus undatus HOM05D003378 ORTHO05D003942 8.9e-43 177.6 109 74.3
Lalb_Chr07g0193451 Lupinus albus HOM05D003378 ORTHO05D003942 1.2e-42 177.2 104 78.8
arahy.Tifrunner.gnm1.ann1.YIK7D0 Arachis hypogaea HOM05D003378 ORTHO05D003942 1.5e-42 176.8 106 73.6
ClCG10G021890 Citrullus lanatus HOM05D003378 ORTHO05D003942 1.5e-42 176.8 109 72.5
Gorai.012G112200 Gossypium raimondii HOM05D003378 ORTHO05D003942 2.0e-42 176.4 109 73.4
arahy.Tifrunner.gnm1.ann1.L6AUEE Arachis hypogaea HOM05D003378 ORTHO05D003942 2.6e-42 176.0 106 73.6
Actinidia01107 Actinidia chinensis HOM05D003378 ORTHO05D003942 3.4e-42 175.6 109 71.6
Atru.chr8.2207 Acer truncatum HOM05D003378 ORTHO05D003942 4.4e-42 175.3 108 75.0
Sc01g0006660 Simmondsia chinensis HOM05D003378 ORTHO05D003942 7.5e-42 174.5 109 73.4
TAR369G0131 Trochodendron aralioides HOM05D003378 ORTHO05D003942 9.8e-42 174.1 109 75.2
MD12G1161400 Malus domestica HOM05D003378 ORTHO05D003942 1.3e-41 173.7 111 74.8
Sopen10g034560 Solanum pennellii HOM05D003378 ORTHO05D003942 1.3e-41 173.7 105 75.2
CSS0046394 Camellia sinensis var. sinensis HOM05D003378 ORTHO05D003942 1.7e-41 173.3 109 70.6
Sed0023271 Sechium edule HOM05D003378 ORTHO05D003942 1.7e-41 173.3 109 72.5
PGSC0003DMG400011091 Solanum tuberosum HOM05D003378 ORTHO05D003942 1.7e-41 173.3 105 75.2
TWI77G0412 Tripterygium wilfordii HOM05D003378 ORTHO05D003942 1.7e-41 173.3 114 71.9
Ah.02g114930 Amaranthus hybridus HOM05D003378 ORTHO05D003942 2.2e-41 172.9 109 72.5
CiPaw.09G207100 Carya illinoinensis HOM05D003378 ORTHO05D003942 2.2e-41 172.9 105 74.3
Lj3g0001695 Lotus japonicus HOM05D003378 ORTHO05D003942 2.2e-41 172.9 105 76.2
Duzib106G1409 Durio zibethinus HOM05D003378 ORTHO05D003942 2.9e-41 172.6 106 73.6
MD04G1148000 Malus domestica HOM05D003378 ORTHO05D003942 3.7e-41 172.2 111 73.9
Nitab4.5_0000008g0880 Nicotiana tabacum HOM05D003378 ORTHO05D003942 3.7e-41 172.2 107 70.1
Oeu030526.1 Olea europaea HOM05D003378 ORTHO05D003942 3.7e-41 172.2 100 79.0
Solyc10g085100.2 Solanum lycopersicum HOM05D003378 ORTHO05D003942 4.9e-41 171.8 105 74.3
CAN.G1297.6 Capsicum annuum HOM05D003378 ORTHO05D003942 6.4e-41 171.4 97 81.4
Aqoxy2G00958 Aquilegia oxysepala HOM05D003378 ORTHO05D003942 8.3e-41 171.0 107 69.2
CSS0025489 Camellia sinensis var. sinensis HOM05D003378 ORTHO05D003942 1.1e-40 170.6 109 72.5
EL10Ac5g11530 Beta vulgaris HOM05D003378 ORTHO05D003942 1.4e-40 170.2 109 70.6
Potri.016G112600 Populus trichocarpa HOM05D003378 ORTHO05D003942 1.4e-40 170.2 105 71.4
CiPaw.10G154700 Carya illinoinensis HOM05D003378 ORTHO05D003942 1.9e-40 169.9 105 72.4
Glyma.03G078300 Glycine max HOM05D003378 ORTHO05D003942 1.9e-40 169.9 103 74.8
Gohir.A04G088800 Gossypium hirsutum HOM05D003378 ORTHO05D003942 1.9e-40 169.9 109 70.6
Peaxi162Scf00009g01921 Petunia axillaris HOM05D003378 ORTHO05D003942 2.4e-40 169.5 105 75.2
RcHm_v2.0_Chr3g0463701 Rosa chinensis HOM05D003378 ORTHO05D003942 2.4e-40 169.5 111 71.2
AUR62020689 Chenopodium quinoa HOM05D003378 ORTHO05D003942 4.1e-40 168.7 109 71.6
Nitab4.5_0004912g0010 Nicotiana tabacum HOM05D003378 ORTHO05D003942 4.1e-40 168.7 105 75.2
THA.LOC104823284 Tarenaya hassleriana HOM05D003378 ORTHO05D003942 4.1e-40 168.7 106 71.7
Glyma.01G113000 Glycine max HOM05D003378 ORTHO05D003942 5.4e-40 168.3 108 72.2
SalBow4G2524 Salvia bowleyana HOM05D003378 ORTHO05D003942 5.4e-40 168.3 105 73.3
MSTRG.19023 Avicennia marina HOM05D003378 ORTHO05D003942 7.1e-40 167.9 105 72.4
Prupe.6G271800 Prunus persica HOM05D003378 ORTHO05D003942 7.1e-40 167.9 101 77.2
PGSC0003DMG400020317 Solanum tuberosum HOM05D003378 ORTHO05D003942 7.1e-40 167.9 109 70.6
TAR623G0363 Trochodendron aralioides HOM05D003378 ORTHO05D003942 9.2e-40 167.5 97 79.4
Migut.J00201 Erythranthe guttata HOM05D003378 ORTHO05D003942 1.2e-39 167.2 107 73.8
SalBow4G1026 Salvia bowleyana HOM05D003378 ORTHO05D003942 1.2e-39 167.2 105 73.3
Actinidia13774 Actinidia chinensis HOM05D003378 ORTHO05D003942 1.6e-39 166.8 107 70.1
CAN.G355.3 Capsicum annuum HOM05D003378 ORTHO05D003942 1.6e-39 166.8 109 68.8
Medtr4g015260 Medicago truncatula HOM05D003378 ORTHO05D003942 2.1e-39 166.4 105 73.3
Nitab4.5_0000652g0220 Nicotiana tabacum HOM05D003378 ORTHO05D003942 2.1e-39 166.4 105 73.3
Oeu015017.1 Olea europaea HOM05D003378 ORTHO05D003942 2.1e-39 166.4 100 77.0
Sed0002007 Sechium edule HOM05D003378 ORTHO05D003942 2.1e-39 166.4 109 67.0
AUR62025812 Chenopodium quinoa HOM05D003378 ORTHO05D003942 3.5e-39 165.6 109 70.6
Peaxi162Scf00141g00615 Petunia axillaris HOM05D003378 ORTHO05D003942 3.5e-39 165.6 109 66.1
TPR.G15969 Trifolium pratense HOM05D003378 ORTHO05D003942 3.5e-39 165.6 105 71.4
unitig_0.g1457 Utricularia gibba HOM05D003378 ORTHO05D003942 3.5e-39 165.6 105 71.4
Phvul.010G005100 Phaseolus vulgaris HOM05D003378 ORTHO05D003942 4.6e-39 165.2 101 75.2
Lj3C956T2 Lonicera japonica HOM05D003378 ORTHO05D003942 6.0e-39 164.9 108 69.4
unitig_27.g24826 Utricularia gibba HOM05D003378 ORTHO05D003942 6.0e-39 164.9 109 70.6
Sabra16G0108300 Salix brachista HOM05D003378 ORTHO05D003942 1.0e-38 164.1 105 70.5
VMungo0331G1068 Vigna mungo HOM05D003378 ORTHO05D003942 1.0e-38 164.1 101 74.3
Ca_20313_v3 Cicer arietinum L. HOM05D003378 ORTHO05D003942 1.3e-38 163.7 105 71.4
Hma1.2p1_0244F.1_g101280 Hydrangea macrophylla HOM05D003378 ORTHO05D003942 1.3e-38 163.7 110 69.1
Psat7g247920 Pisum sativum HOM05D003378 ORTHO05D003942 1.3e-38 163.7 101 74.3
Manes.09G103000 Manihot esculenta HOM05D003378 ORTHO05D003942 2.3e-38 162.9 106 71.7
THA.LOC104827042 Tarenaya hassleriana HOM05D003378 ORTHO05D003942 6.6e-38 161.4 106 67.9
TWI53G0359 Tripterygium wilfordii HOM05D003378 ORTHO05D003942 6.6e-38 161.4 109 68.8
DCAR_028819 Daucus carota HOM05D003378 ORTHO05D003942 8.6e-38 161.0 107 70.1
Lalb_Chr13g0291251 Lupinus albus HOM05D003378 ORTHO05D003942 8.6e-38 161.0 101 73.3
HanXRQChr11g0329601 Helianthus annuus HOM05D003378 ORTHO05D003942 1.1e-37 160.6 104 70.2
Lsat_1_v5_gn_5_155081 Lactuca sativa HOM05D003378 ORTHO05D003942 1.1e-37 160.6 101 70.3
Rhsim05G0206900 Rhododendron simsii HOM05D003378 ORTHO05D003942 1.1e-37 160.6 106 67.9
unitig_88.g27657 Utricularia gibba HOM05D003378 ORTHO05D003942 1.1e-37 160.6 105 68.6
vmacro08599 Vaccinium macrocarpon HOM05D003378 ORTHO05D003942 1.1e-37 160.6 107 69.2
Sopen09g007150 Solanum pennellii HOM05D003378 ORTHO05D003942 1.5e-37 160.2 109 68.8
SGA_v2.0_scaffold85G26755 Striga asiatica HOM05D003378 ORTHO05D003942 1.5e-37 160.2 103 70.9
HanXRQChr10g0287061 Helianthus annuus HOM05D003378 ORTHO05D003942 2.5e-37 159.5 101 71.3
Os07g0100300 Oryza sativa ssp. japonica HOM05D003378 ORTHO05D003942 2.5e-37 159.5 104 71.2
Solyc09g014300.3 Solanum lycopersicum HOM05D003378 ORTHO05D003942 2.5e-37 159.5 109 68.8
PSO339G6012 Papaver somniferum HOM05D003378 ORTHO05D003942 3.3e-37 159.1 108 68.5
PSO801G0661 Papaver somniferum HOM05D003378 ORTHO05D003942 3.3e-37 159.1 108 68.5
vmacro22553 Vaccinium macrocarpon HOM05D003378 ORTHO05D003942 3.3e-37 159.1 107 66.4
ECA247G2610 Erigeron canadensis HOM05D003378 ORTHO05D003942 4.3e-37 158.7 102 70.6
MBI14_g04426_MAGBIO Magnolia biondii HOM05D003378 ORTHO05D003942 4.3e-37 158.7 109 66.1
Rhsim04G0166600 Rhododendron simsii HOM05D003378 ORTHO05D003942 4.3e-37 158.7 107 66.4
Aa31LG1G22850 Aethionema arabicum HOM05D003378 ORTHO05D003942 7.3e-37 157.9 106 65.1
ECA248G0513 Erigeron canadensis HOM05D003378 ORTHO05D003942 7.3e-37 157.9 101 70.3
AT5G01220 Arabidopsis thaliana HOM05D003378 ORTHO05D003942 1.2e-36 157.1 106 64.2
FAN05G4401 Fragaria x ananassa HOM05D003378 ORTHO05D003942 2.8e-36 156.0 102 71.6
Lsat_1_v5_gn_9_36000 Lactuca sativa HOM05D003378 ORTHO05D003942 2.8e-36 156.0 102 68.6
SalBow5G3819 Salvia bowleyana HOM05D003378 ORTHO05D003942 2.8e-36 156.0 104 69.2
SalBow5G4142 Salvia bowleyana HOM05D003378 ORTHO05D003942 2.8e-36 156.0 104 69.2
FvH4_6g11930 Fragaria vesca HOM05D003378 ORTHO05D003942 3.6e-36 155.6 102 71.6
FAN02G2254 Fragaria x ananassa HOM05D003378 ORTHO05D003942 3.6e-36 155.6 103 70.9
FAN14G4021 Fragaria x ananassa HOM05D003378 ORTHO05D003942 3.6e-36 155.6 102 71.6
FAN14G4776 Fragaria x ananassa HOM05D003378 ORTHO05D003942 3.6e-36 155.6 102 71.6
Zm00001eb297970 Zea mays HOM05D003378 ORTHO05D003942 6.2e-36 154.8 97 70.1
FAN09G0987 Fragaria x ananassa HOM05D003378 ORTHO05D003942 1.1e-35 154.1 102 70.6
Migut.L01997 Erythranthe guttata HOM05D003378 ORTHO05D003942 3.1e-35 152.5 95 72.6
Os01g0142300 Oryza sativa ssp. japonica HOM05D003378 ORTHO05D003942 4.0e-35 152.1 106 63.2
CDE02G3708 Ceratophyllum demersum HOM05D003378 ORTHO05D003942 1.2e-34 150.6 103 64.1
Zm00001eb335670 Zea mays HOM05D003378 ORTHO05D003942 1.5e-34 150.2 105 62.9
Gohir.D04G129200 Gossypium hirsutum HOM05D003378 ORTHO05D003942 2.9e-33 146.0 95 71.6
Sp6g40570 Schrenkiella parvula HOM05D003378 ORTHO05D003942 2.9e-33 146.0 98 63.3
Carub.0006s0067 Capsella rubella HOM05D003378 ORTHO05D003942 1.4e-32 143.7 97 61.9
Thhalv10013276m.g Eutrema salsugineum HOM05D003378 ORTHO05D003942 1.9e-32 143.3 97 62.9
AL6G10970 Arabidopsis lyrata HOM05D003378 ORTHO05D003942 2.4e-32 142.9 97 61.9
DCAR_024027 Daucus carota HOM05D003378 ORTHO05D003942 3.2e-32 142.5 96 69.8
BcaC06g31967 Brassica carinata HOM05D003378 ORTHO05D003942 5.4e-32 141.7 99 63.6
BcaNung02769 Brassica carinata HOM05D003378 ORTHO05D003942 5.4e-32 141.7 100 60.0
BolC9t60189H Brassica oleracea HOM05D003378 ORTHO05D003942 5.4e-32 141.7 100 60.0
A03p00390 Brassica napus HOM05D003378 ORTHO05D003942 7.1e-32 141.4 95 63.2
BraA03t09430Z Brassica rapa HOM05D003378 ORTHO05D003942 7.1e-32 141.4 95 63.2
A10p33660 Brassica napus HOM05D003378 ORTHO05D003942 3.5e-31 139.0 99 61.6
HPP92_019420 Vanilla planifolia HOM05D003378 ORTHO05D003942 4.6e-31 138.7 107 60.7
BcaB01g06094 Brassica carinata HOM05D003378 ORTHO05D003942 6.0e-31 138.3 95 62.1
C03p00550 Brassica napus HOM05D003378 ORTHO05D003942 6.0e-31 138.3 95 62.1
BolC3t12621H Brassica oleracea HOM05D003378 ORTHO05D003942 6.0e-31 138.3 95 62.1
CARHR211550 Cardamine hirsuta HOM05D003378 ORTHO05D003942 6.0e-31 138.3 97 59.8
C09p74570 Brassica napus HOM05D003378 ORTHO05D003942 7.8e-31 137.9 98 59.2
SEGI_03332 Sequoiadendron giganteum HOM05D003378 ORTHO05D003942 1.3e-30 137.1 97 63.9
HPP92_012629 Vanilla planifolia HOM05D003378 ORTHO05D003942 2.1e-28 129.8 99 60.6
SGA_v2.0_scaffold106G30519 Striga asiatica HOM05D003378 ORTHO05D003942 2.6e-26 122.9 95 56.8
Nn2g11403 Nelumbo nucifera HOM05D003378 ORTHO05D003942 2.9e-25 119.4 80 65.0
Pp3c15_4410 Physcomitrium patens HOM05D003378 ORTHO05D003942 1.9e-24 116.7 85 60.0
Pp3c9_8520 Physcomitrium patens HOM05D003378 ORTHO05D003942 2.4e-24 116.3 85 61.2
Mapoly0129s0040 Marchantia polymorpha HOM05D003378 ORTHO05D003942 7.1e-24 114.8 94 56.4
Os03g0265100 Oryza sativa ssp. japonica HOM05D003378 ORTHO05D003942 1.6e-23 113.6 84 60.7
AagrBONN_evm.TU.Sc2ySwM_228.713 Anthoceros agrestis HOM05D003378 ORTHO05D003942 5.6e-21 105.1 93 54.8
SMO118G0052 Selaginella moellendorffii HOM05D003378 ORTHO05D003942 2.1e-20 103.2 111 45.0
BcaC06g31965 Brassica carinata HOM05D003378 ORTHO05D003942 7.6e-18 94.7 115 47.0
TPR.G15967 Trifolium pratense HOM05D003378 ORTHO05D003942 1.7e-17 93.6 71 62.0
Nn2g13633 Nelumbo nucifera HOM05D003378 ORTHO05D003942 6.4e-17 91.7 59 74.6
Cre01.g038550 Chlamydomonas reinhardtii HOM05D003378 ORTHO05D003942 2.5e-13 79.7 78 48.7
PRCOL_00001337 Prasinoderma coloniale HOM05D003378 ORTHO05D003942 1.2e-10 70.9 77 46.8
Medtr4g015250 Medicago truncatula HOM05D003378 ORTHO05D003942 3.5e-07 59.3 34 73.5
Cre16.g689150 Chlamydomonas reinhardtii HOM05D003378 ORTHO05D003942 8.7e-06 54.7 81 40.7


User provided reference genes

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