Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G1583 Trifolium pratense HOM05D005382 ORTHO05D006795 6.0e-17 90.5 46 100.0
TPR.G3367 Trifolium pratense HOM05D005382 ORTHO05D006795 1.2e-14 82.8 44 95.5
Medtr4g007700 Medicago truncatula HOM05D005382 ORTHO05D006795 1.1e-13 79.7 45 88.9
Psat7g262200 Pisum sativum HOM05D005382 ORTHO05D006795 1.1e-13 79.7 43 93.0
VMungo0647G2390 Vigna mungo HOM05D005382 ORTHO05D006795 1.8e-13 79.0 45 88.9
Glyma.07G021400 Glycine max HOM05D005382 ORTHO05D006795 4.0e-13 77.8 45 86.7
Glyma.08G220400 Glycine max HOM05D005382 ORTHO05D006795 4.0e-13 77.8 45 86.7
Phvul.008G253200 Phaseolus vulgaris HOM05D005382 ORTHO05D006795 4.0e-13 77.8 45 86.7
Lj3g0027435 Lotus japonicus HOM05D005382 ORTHO05D006795 1.5e-12 75.9 45 82.2
Lalb_Chr01g0011991 Lupinus albus HOM05D005382 ORTHO05D006795 3.4e-12 74.7 45 80.0
Ciclev10026461m.g Citrus clementina HOM05D005382 ORTHO05D006795 4.4e-12 74.3 45 80.0
SGA_v2.0_scaffold515G52664 Striga asiatica HOM05D003096 ORTHO05D003521 4.4e-12 74.3 45 82.2
Atru.chr1.2804_Atru.chr1.2805 Acer truncatum HOM05D005382 ORTHO05D006795 5.8e-12 73.9 45 80.0
arahy.Tifrunner.gnm1.ann1.7IZ6IW Arachis hypogaea HOM05D005382 ORTHO05D006795 7.6e-12 73.6 46 78.3
arahy.Tifrunner.gnm1.ann1.HUQR60 Arachis hypogaea HOM05D005382 ORTHO05D006795 7.6e-12 73.6 46 78.3
Migut.I00626 Erythranthe guttata HOM05D005382 ORTHO05D006795 9.9e-12 73.2 45 77.8
Hma1.2p1_0329F.1_g127290 Hydrangea macrophylla HOM05D005382 ORTHO05D006795 9.9e-12 73.2 45 77.8
Lalb_Chr25g0278731 Lupinus albus HOM05D005382 ORTHO05D006795 9.9e-12 73.2 45 77.8
SalBow1G1272 Salvia bowleyana HOM05D005382 ORTHO05D006795 9.9e-12 73.2 45 80.0
Nn8g40079 Nelumbo nucifera HOM05D005382 ORTHO05D006795 1.3e-11 72.8 45 80.0
Duzib192G0805 Durio zibethinus HOM05D005382 ORTHO05D006795 1.7e-11 72.4 45 77.8
Lj5A81T85 Lonicera japonica HOM05D005382 ORTHO05D006795 1.7e-11 72.4 45 77.8
MD09G1227600 Malus domestica HOM05D005382 ORTHO05D006795 1.7e-11 72.4 45 80.0
Prupe.3G103600 Prunus persica HOM05D005382 ORTHO05D006795 1.7e-11 72.4 45 77.8
CiPaw.01G256500 Carya illinoinensis HOM05D005382 ORTHO05D006795 2.2e-11 72.0 45 77.8
CiPaw.02G163400 Carya illinoinensis HOM05D005382 ORTHO05D006795 2.2e-11 72.0 45 80.0
DCAR_021374 Daucus carota HOM05D005382 ORTHO05D006795 2.2e-11 72.0 45 77.8
FvH4_6g28270 Fragaria vesca HOM05D005382 ORTHO05D006795 2.2e-11 72.0 45 77.8
AL2G40440 Arabidopsis lyrata HOM05D005382 ORTHO05D006795 2.9e-11 71.6 45 77.8
AT1G80940 Arabidopsis thaliana HOM05D005382 ORTHO05D006795 2.9e-11 71.6 45 77.8
BcaB02g07237 Brassica carinata HOM05D005382 ORTHO05D006795 2.9e-11 71.6 45 77.8
BcaB02g08711 Brassica carinata HOM05D005382 ORTHO05D006795 2.9e-11 71.6 45 77.8
BcaNung04166 Brassica carinata HOM05D005382 ORTHO05D006795 2.9e-11 71.6 45 77.8
A07p26960 Brassica napus HOM05D005382 ORTHO05D006795 2.9e-11 71.6 45 77.8
A07p44750 Brassica napus HOM05D005382 ORTHO05D006795 2.9e-11 71.6 45 77.8
C06p29630 Brassica napus HOM05D005382 ORTHO05D006795 2.9e-11 71.6 45 77.8
C06p53570 Brassica napus HOM05D005382 ORTHO05D006795 2.9e-11 71.6 45 77.8
BolC6t38128H Brassica oleracea HOM05D005382 ORTHO05D006795 2.9e-11 71.6 45 77.8
BraA07t30340Z Brassica rapa HOM05D005382 ORTHO05D006795 2.9e-11 71.6 45 77.8
BraA07t31983Z Brassica rapa HOM05D005382 ORTHO05D006795 2.9e-11 71.6 45 77.8
Carub.0002s2660 Capsella rubella HOM05D005382 ORTHO05D006795 2.9e-11 71.6 45 77.8
COL.COLO4_26772 Corchorus olitorius HOM05D005382 ORTHO05D006795 2.9e-11 71.6 45 77.8
Thhalv10019121m.g Eutrema salsugineum HOM05D005382 ORTHO05D006795 2.9e-11 71.6 45 77.8
Gohir.A11G075200 Gossypium hirsutum HOM05D005382 ORTHO05D006795 2.9e-11 71.6 45 77.8
Gohir.D11G079900 Gossypium hirsutum HOM05D005382 ORTHO05D006795 2.9e-11 71.6 45 77.8
Gorai.007G085500 Gossypium raimondii HOM05D005382 ORTHO05D006795 2.9e-11 71.6 45 77.8
Nn8g40087 Nelumbo nucifera HOM05D005382 ORTHO05D006795 2.9e-11 71.6 45 77.8
Potri.001G041900 Populus trichocarpa HOM05D005382 ORTHO05D006795 2.9e-11 71.6 45 77.8
Sp5g34800 Schrenkiella parvula HOM05D005382 ORTHO05D006795 2.9e-11 71.6 45 77.8
BcaC08g47533 Brassica carinata HOM05D005382 ORTHO05D006795 3.8e-11 71.2 45 77.8
BolC6t40373H Brassica oleracea HOM05D005382 ORTHO05D006795 3.8e-11 71.2 45 77.8
CARHR073510 Cardamine hirsuta HOM05D005382 ORTHO05D006795 3.8e-11 71.2 45 75.6
FAN02G4537 Fragaria x ananassa HOM05D005382 ORTHO05D006795 3.8e-11 71.2 45 77.8
FAN05G5289 Fragaria x ananassa HOM05D005382 ORTHO05D006795 3.8e-11 71.2 45 77.8
FAN09G0036 Fragaria x ananassa HOM05D005382 ORTHO05D006795 3.8e-11 71.2 45 77.8
FAN14G0578 Fragaria x ananassa HOM05D005382 ORTHO05D006795 3.8e-11 71.2 45 77.8
Rhsim08G0203100 Rhododendron simsii HOM05D005382 ORTHO05D006795 3.8e-11 71.2 45 77.8
RcHm_v2.0_Chr2g0132311 Rosa chinensis HOM05D005382 ORTHO05D006795 3.8e-11 71.2 45 77.8
THA.LOC104808172 Tarenaya hassleriana HOM05D005382 ORTHO05D006795 3.8e-11 71.2 45 77.8
Actinidia08935 Actinidia chinensis HOM05D005382 ORTHO05D006795 4.9e-11 70.9 45 77.8
MSTRG.11221 Avicennia marina HOM05D005382 ORTHO05D006795 4.9e-11 70.9 45 75.6
Eucgr.F03985 Eucalyptus grandis HOM05D005382 ORTHO05D006795 4.9e-11 70.9 45 77.8
MD17G1226400 Malus domestica HOM05D005382 ORTHO05D006795 4.9e-11 70.9 45 77.8
Manes.04G100900 Manihot esculenta HOM05D005382 ORTHO05D006795 4.9e-11 70.9 45 77.8
SGA_v2.0_scaffold74G24593 Striga asiatica HOM05D005382 ORTHO05D006795 4.9e-11 70.9 45 77.8
Thecc.06G046600 Theobroma cacao HOM05D005382 ORTHO05D006795 4.9e-11 70.9 45 77.8
Cc04_g05300 Coffea canephora HOM05D005382 ORTHO05D006795 6.4e-11 70.5 45 75.6
TWI12G1456 Tripterygium wilfordii HOM05D005382 ORTHO05D006795 6.4e-11 70.5 45 75.6
MSTRG.22842 Avicennia marina HOM05D005382 ORTHO05D006795 8.4e-11 70.1 45 75.6
Cfa001857 Carpinus fangiana HOM05D005382 ORTHO05D006795 8.4e-11 70.1 45 77.8
Haze_16689 Corylus avellana HOM05D005382 ORTHO05D006795 8.4e-11 70.1 45 77.8
Dinv21426 Davidia involucrata HOM05D005382 ORTHO05D006795 8.4e-11 70.1 45 77.8
Duzib235G0288 Durio zibethinus HOM05D005382 ORTHO05D006795 8.4e-11 70.1 45 75.6
Potri.003G184925 Populus trichocarpa HOM05D005382 ORTHO05D006795 8.4e-11 70.1 45 75.6
HPP92_010348 Vanilla planifolia HOM05D005382 ORTHO05D006795 8.4e-11 70.1 45 75.6
PSO782G0145 Papaver somniferum HOM05D005382 ORTHO05D006795 1.1e-10 69.7 45 80.0
QL05p036845 Quercus lobata HOM05D005382 ORTHO05D006795 1.1e-10 69.7 45 75.6
TAR625G1145 Trochodendron aralioides HOM05D005382 ORTHO05D006795 1.1e-10 69.7 45 75.6
unitig_22.g6275 Utricularia gibba HOM05D005382 ORTHO05D006795 1.1e-10 69.7 45 75.6
Aa31LG4G1250 Aethionema arabicum HOM05D005382 ORTHO05D006795 1.4e-10 69.3 45 73.3
TWI75G0559 Tripterygium wilfordii HOM05D005382 ORTHO05D006795 1.4e-10 69.3 45 73.3
ATR0580G392 Amborella trichopoda HOM05D005382 ORTHO05D006795 1.9e-10 68.9 45 75.6
MSTRG.9395 Avicennia marina HOM05D005382 ORTHO05D006795 1.9e-10 68.9 45 75.6
Cpa.g.c28380.1 Carica papaya HOM05D005382 ORTHO05D006795 1.9e-10 68.9 45 75.6
Manes.11G069200 Manihot esculenta HOM05D005382 ORTHO05D006795 1.9e-10 68.9 45 75.6
PGR102G0492 Punica granatum HOM05D005382 ORTHO05D006795 2.4e-10 68.6 45 73.3
Sabra03G0135500 Salix brachista HOM05D005382 ORTHO05D006795 2.4e-10 68.6 44 75.0
MELO3C023486.2 Cucumis melo HOM05D005382 ORTHO05D006795 3.2e-10 68.2 45 71.1
MBI15_g08404_MAGBIO Magnolia biondii HOM05D005382 ORTHO05D006795 3.2e-10 68.2 45 75.6
CAN.G1008.7 Capsicum annuum HOM05D005382 ORTHO05D006795 4.1e-10 67.8 45 73.3
Nitab4.5_0002700g0060 Nicotiana tabacum HOM05D005382 ORTHO05D006795 4.1e-10 67.8 45 73.3
Nitab4.5_0004738g0090 Nicotiana tabacum HOM05D005382 ORTHO05D006795 4.1e-10 67.8 45 73.3
PSO063G0682 Papaver somniferum HOM05D005382 ORTHO05D006795 4.1e-10 67.8 45 77.8
Sed0008280 Sechium edule HOM05D005382 ORTHO05D006795 4.1e-10 67.8 45 71.1
Solyc03g117670.4 Solanum lycopersicum HOM05D005382 ORTHO05D006795 4.1e-10 67.8 45 73.3
Sopen03g036580 Solanum pennellii HOM05D005382 ORTHO05D006795 4.1e-10 67.8 45 73.3
GSVIVG01016103001 Vitis vinifera HOM05D005382 ORTHO05D006795 4.1e-10 67.8 45 75.6
CSS0039254 Camellia sinensis var. sinensis HOM05D005382 ORTHO05D006795 5.4e-10 67.4 45 73.3
Lsat_1_v5_gn_1_30801 Lactuca sativa HOM05D005382 ORTHO05D006795 5.4e-10 67.4 45 75.6
PGSC0003DMG400014155 Solanum tuberosum HOM05D005382 ORTHO05D006795 5.4e-10 67.4 45 73.3
HanXRQChr09g0274181 Helianthus annuus HOM05D005382 ORTHO05D006795 7.1e-10 67.0 45 75.6
Lsat_1_v5_gn_4_85061 Lactuca sativa HOM05D005382 ORTHO05D006795 7.1e-10 67.0 45 75.6
CDE04G1090 Ceratophyllum demersum HOM05D005382 ORTHO05D006795 9.2e-10 66.6 45 73.3
HanXRQChr04g0100021 Helianthus annuus HOM05D005382 ORTHO05D006795 9.2e-10 66.6 45 73.3
Peaxi162Scf00314g01032 Petunia axillaris HOM05D005382 ORTHO05D006795 9.2e-10 66.6 45 71.1
Actinidia26580 Actinidia chinensis HOM05D005382 ORTHO05D006795 1.2e-09 66.2 45 73.3
Actinidia36864 Actinidia chinensis HOM05D005382 ORTHO05D006795 1.2e-09 66.2 45 73.3
CDE07G1687 Ceratophyllum demersum HOM05D005382 ORTHO05D006795 1.2e-09 66.2 45 73.3
CsaV3_7G031710 Cucumis sativus L. HOM05D005382 ORTHO05D006795 1.2e-09 66.2 45 68.9
ECA232G4196 Erigeron canadensis HOM05D005382 ORTHO05D006795 1.2e-09 66.2 45 75.6
Sc12g0008250 Simmondsia chinensis HOM05D005382 ORTHO05D006795 1.2e-09 66.2 45 71.1
vmacro16842 Vaccinium macrocarpon HOM05D005382 ORTHO05D006795 1.2e-09 66.2 45 73.3
ClCG09G003490 Citrullus lanatus HOM05D005382 ORTHO05D006795 2.1e-09 65.5 45 68.9
Rhsim12G0185400 Rhododendron simsii HOM05D005382 ORTHO05D006795 2.1e-09 65.5 45 73.3
Oeu003125.1 Olea europaea HOM05D005382 ORTHO05D006795 3.5e-09 64.7 45 71.1
Sabra01G0028700 Salix brachista HOM05D005382 ORTHO05D006795 3.5e-09 64.7 45 68.9
ECA247G2189 Erigeron canadensis HOM05D005382 ORTHO05D006795 4.6e-09 64.3 45 71.1
Oeu051555.1 Olea europaea HOM05D005382 ORTHO05D006795 6.0e-09 63.9 45 73.3
Mapoly0128s0009 Marchantia polymorpha HOM05D005382 ORTHO05D006795 7.8e-09 63.5 45 71.1
AUR62032996 Chenopodium quinoa HOM05D005382 ORTHO05D006795 1.0e-08 63.2 45 68.9
Pp3c16_25700 Physcomitrium patens HOM05D005382 ORTHO05D006795 1.0e-08 63.2 45 68.9
AUR62034069 Chenopodium quinoa HOM05D007611 ORTHO05D006795 1.3e-08 62.8 45 66.7
EL10Ac8g19398 Beta vulgaris HOM05D005382 ORTHO05D006795 1.7e-08 62.4 45 66.7
Eucgr.J03130 Eucalyptus grandis HOM05D005382 ORTHO05D006795 3.9e-08 61.2 45 68.9
Pp3c25_9780 Physcomitrium patens HOM05D005382 ORTHO05D006795 6.6e-08 60.5 45 66.7
SMO145G0139 Selaginella moellendorffii HOM05D005382 ORTHO05D006795 8.7e-08 60.1 45 68.9
Os02g0793900 Oryza sativa ssp. japonica HOM05D005382 ORTHO05D006795 1.1e-07 59.7 45 68.9
Zm00001eb257680 Zea mays HOM05D005382 ORTHO05D006795 1.5e-07 59.3 45 68.9
SEGI_41275 Sequoiadendron giganteum HOM05D005382 ORTHO05D006795 4.3e-07 57.8 45 64.4
SEGI_02613 Sequoiadendron giganteum HOM05D005382 ORTHO05D006795 4.7e-06 54.3 45 62.2
AagrBONN_evm.TU.Sc2ySwM_117.2014 Anthoceros agrestis HOM05D005382 ORTHO05D006795 8.1e-06 53.5 43 65.1


User provided reference genes

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