Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G15828 Trifolium pratense HOM05D004525 ORTHO05D005295 6.1e-92 340.9 182 100.0
TPR.G11962 Trifolium pratense HOM05D004525 ORTHO05D005295 7.2e-85 317.4 182 94.0
Ca_02991_v3 Cicer arietinum L. HOM05D004525 ORTHO05D005295 1.6e-84 316.2 187 90.4
Ca_17957_v3 Cicer arietinum L. HOM05D004525 ORTHO05D005295 2.7e-84 315.5 187 89.8
Lalb_Chr13g0294931 Lupinus albus HOM05D004525 ORTHO05D005295 6.3e-81 304.3 187 86.6
Lalb_Chr12g0205381 Lupinus albus HOM05D004525 ORTHO05D005295 3.5e-79 298.5 187 84.5
Phvul.003G069600 Phaseolus vulgaris HOM05D004525 ORTHO05D005295 2.9e-78 295.4 193 83.4
Medtr8g085570 Medicago truncatula HOM05D004525 ORTHO05D005295 1.1e-77 293.5 187 82.9
Glyma.08G296500 Glycine max HOM05D004525 ORTHO05D005295 1.5e-77 293.1 193 82.4
VMungo0251G0643 Vigna mungo HOM05D004525 ORTHO05D005295 1.2e-76 290.0 185 84.9
Glyma.18G125700 Glycine max HOM05D004525 ORTHO05D005295 6.1e-76 287.7 193 82.4
Psat7g073160 Pisum sativum HOM05D004525 ORTHO05D005295 1.8e-75 286.2 187 81.3
Psat7g073280 Pisum sativum HOM05D004525 ORTHO05D005295 1.7e-70 269.6 163 87.7
Lj4g0018067 Lotus japonicus HOM05D004525 ORTHO05D005295 8.0e-68 260.8 195 73.8
MD06G1119500 Malus domestica HOM05D004525 ORTHO05D005295 5.2e-67 258.1 189 73.5
QL12p036922 Quercus lobata HOM05D004525 ORTHO05D005295 6.8e-67 257.7 190 73.2
QL02p027997 Quercus lobata HOM05D004525 ORTHO05D005295 8.8e-67 257.3 190 72.6
Cfa011920 Carpinus fangiana HOM05D004525 ORTHO05D005295 1.3e-65 253.4 187 73.8
Ciclev10022441m.g Citrus clementina HOM05D004525 ORTHO05D005295 2.2e-65 252.7 180 73.3
Manes.09G101000 Manihot esculenta HOM05D004525 ORTHO05D005295 2.8e-65 252.3 187 73.8
Thecc.03G220900 Theobroma cacao HOM05D004525 ORTHO05D005295 2.8e-65 252.3 190 72.1
MD14G1136300 Malus domestica HOM05D004525 ORTHO05D005295 4.9e-65 251.5 190 72.6
Potri.001G083801 Populus trichocarpa HOM05D004525 ORTHO05D005295 6.3e-65 251.1 190 71.6
Sabra01G0060700 Salix brachista HOM05D004525 ORTHO05D005295 6.3e-65 251.1 190 71.6
CiPaw.11G112000 Carya illinoinensis HOM05D004525 ORTHO05D005295 1.4e-64 250.0 191 72.3
COL.COLO4_10799 Corchorus olitorius HOM05D004525 ORTHO05D005295 1.4e-64 250.0 192 70.8
Gohir.A12G240200 Gossypium hirsutum HOM05D004525 ORTHO05D005295 1.8e-64 249.6 190 71.6
Duzib068G1021 Durio zibethinus HOM05D004525 ORTHO05D005295 2.4e-64 249.2 190 70.5
Duzib205G1187 Durio zibethinus HOM05D004525 ORTHO05D005295 2.4e-64 249.2 177 73.4
CiPaw.12G077100 Carya illinoinensis HOM05D004525 ORTHO05D005295 3.1e-64 248.8 190 70.5
Prupe.2G307200 Prunus persica HOM05D004525 ORTHO05D005295 3.1e-64 248.8 187 72.2
Haze_04010 Corylus avellana HOM05D004525 ORTHO05D005295 4.1e-64 248.4 186 72.6
RcHm_v2.0_Chr1g0332661 Rosa chinensis HOM05D004525 ORTHO05D005295 4.1e-64 248.4 190 71.1
GSVIVG01019654001 Vitis vinifera HOM05D004525 ORTHO05D005295 4.1e-64 248.4 193 70.5
FvH4_4g11450 Fragaria vesca HOM05D004525 ORTHO05D005295 5.4e-64 248.1 190 70.0
FAN07G0034 Fragaria x ananassa HOM05D004525 ORTHO05D005295 5.4e-64 248.1 190 70.0
Cfa006748 Carpinus fangiana HOM05D004525 ORTHO05D005295 7.0e-64 247.7 186 72.6
Gorai.008G258800 Gossypium raimondii HOM05D004525 ORTHO05D005295 7.0e-64 247.7 190 71.1
RcHm_v2.0_Chr6g0273561 Rosa chinensis HOM05D004525 ORTHO05D005295 7.0e-64 247.7 177 73.4
Sabra03G0106900 Salix brachista HOM05D004525 ORTHO05D005295 9.2e-64 247.3 188 70.7
Prupe.5G130000 Prunus persica HOM05D004525 ORTHO05D005295 1.6e-63 246.5 190 70.0
Gohir.D12G241500 Gossypium hirsutum HOM05D004525 ORTHO05D005295 2.0e-63 246.1 190 70.5
Atru.chr9.1879 Acer truncatum HOM05D004525 ORTHO05D005295 5.9e-63 244.6 191 68.6
Potri.003G146900 Populus trichocarpa HOM05D004525 ORTHO05D005295 5.9e-63 244.6 189 69.8
Cpa.g.sc27.182 Carica papaya HOM05D004525 ORTHO05D005295 1.0e-62 243.8 190 67.9
FAN22G0758 Fragaria x ananassa HOM05D004525 ORTHO05D005295 3.8e-62 241.9 180 71.1
Dinv38179 Davidia involucrata HOM05D004525 ORTHO05D005295 5.0e-62 241.5 174 73.0
PGR031G2275 Punica granatum HOM05D004525 ORTHO05D005295 5.0e-62 241.5 190 70.5
Actinidia22207 Actinidia chinensis HOM05D004525 ORTHO05D005295 6.6e-62 241.1 188 69.7
Lsat_1_v5_gn_3_14420 Lactuca sativa HOM05D004525 ORTHO05D005295 8.6e-62 240.7 195 67.7
Nn3g18812 Nelumbo nucifera HOM05D004525 ORTHO05D005295 9.5e-61 237.3 187 69.5
AT1G26665 Arabidopsis thaliana HOM05D004525 ORTHO05D005295 2.8e-60 235.7 188 64.9
DCAR_011870 Daucus carota HOM05D004525 ORTHO05D005295 2.8e-60 235.7 182 69.8
MBI04_g25309_MAGBIO Magnolia biondii HOM05D004525 ORTHO05D005295 2.8e-60 235.7 192 67.7
SGA_v2.0_scaffold14G07039 Striga asiatica HOM05D004525 ORTHO05D005295 2.8e-60 235.7 192 67.2
SGA_v2.0_scaffold36G14274 Striga asiatica HOM05D004525 ORTHO05D005295 2.8e-60 235.7 192 67.2
THA.LOC104809303 Tarenaya hassleriana HOM05D004525 ORTHO05D005295 3.6e-60 235.3 188 66.5
arahy.Tifrunner.gnm1.ann1.0LH6ZS Arachis hypogaea HOM05D004525 ORTHO05D005295 4.7e-60 235.0 193 71.5
TAR629G2664 Trochodendron aralioides HOM05D004525 ORTHO05D005295 6.1e-60 234.6 192 68.8
HanXRQChr17g0534221 Helianthus annuus HOM05D004525 ORTHO05D005295 8.0e-60 234.2 189 68.3
arahy.Tifrunner.gnm1.ann1.DJD4V2 Arachis hypogaea HOM05D004525 ORTHO05D005295 1.4e-59 233.4 193 71.0
Nitab4.5_0001367g0040 Nicotiana tabacum HOM05D004525 ORTHO05D005295 1.4e-59 233.4 195 65.6
Thhalv10008848m.g Eutrema salsugineum HOM05D004525 ORTHO05D005295 1.8e-59 233.0 190 65.3
Lj4g0019040 Lotus japonicus HOM05D004525 ORTHO05D005295 3.0e-59 232.3 169 76.3
Cc08_g16770 Coffea canephora HOM05D004525 ORTHO05D005295 5.2e-59 231.5 156 75.0
Eucgr.C04229 Eucalyptus grandis HOM05D004525 ORTHO05D005295 5.2e-59 231.5 190 67.4
Hma1.2p1_0456F.1_g156630 Hydrangea macrophylla HOM05D004525 ORTHO05D005295 5.2e-59 231.5 155 77.4
TWI56G0194 Tripterygium wilfordii HOM05D004525 ORTHO05D005295 5.2e-59 231.5 190 68.4
CSS0029651 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 6.8e-59 231.1 187 66.8
Sed0024458 Sechium edule HOM05D004525 ORTHO05D005295 1.2e-58 230.3 184 67.4
CSS0036474 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 1.5e-58 229.9 187 66.8
AL1G39060 Arabidopsis lyrata HOM05D004525 ORTHO05D005295 2.0e-58 229.6 190 64.2
Migut.E00628 Erythranthe guttata HOM05D004525 ORTHO05D005295 3.4e-58 228.8 185 65.4
Nitab4.5_0012632g0010 Nicotiana tabacum HOM05D004525 ORTHO05D005295 3.4e-58 228.8 195 65.1
CSS0049671 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 4.4e-58 228.4 187 66.3
Rhsim07G0078000 Rhododendron simsii HOM05D004525 ORTHO05D005295 4.4e-58 228.4 193 66.3
TWI36G0523 Tripterygium wilfordii HOM05D004525 ORTHO05D005295 4.4e-58 228.4 175 70.3
ClCG10G000810 Citrullus lanatus HOM05D004525 ORTHO05D005295 5.7e-58 228.0 189 67.2
DCAR_006547 Daucus carota HOM05D004525 ORTHO05D005295 5.7e-58 228.0 182 67.0
Solyc08g065160.3 Solanum lycopersicum HOM05D004525 ORTHO05D005295 7.5e-58 227.6 200 65.0
Sopen08g018760 Solanum pennellii HOM05D004525 ORTHO05D005295 7.5e-58 227.6 200 65.0
CsaV3_3G000870 Cucumis sativus L. HOM05D004525 ORTHO05D005295 9.8e-58 227.3 192 66.1
PGSC0003DMG400029951 Solanum tuberosum HOM05D004525 ORTHO05D005295 2.9e-57 225.7 200 64.5
ECA246G3328 Erigeron canadensis HOM05D004525 ORTHO05D005295 4.9e-57 224.9 186 66.7
Haze_09177 Corylus avellana HOM05D004525 ORTHO05D005295 6.4e-57 224.6 174 70.1
vmacro13851 Vaccinium macrocarpon HOM05D004525 ORTHO05D005295 8.3e-57 224.2 182 67.0
BraA07t29074Z Brassica rapa HOM05D001252 ORTHO05D005295 1.1e-56 223.8 185 63.8
BcaC06g35131 Brassica carinata HOM05D004525 ORTHO05D005295 1.4e-56 223.4 191 62.8
EL10Ac5g12425 Beta vulgaris HOM05D004525 ORTHO05D005295 1.8e-56 223.0 192 63.5
A07p13030 Brassica napus HOM05D001252 ORTHO05D005295 1.8e-56 223.0 186 63.4
SalBow6G4763 Salvia bowleyana HOM05D004525 ORTHO05D005295 1.8e-56 223.0 166 69.3
unitig_744.g24303 Utricularia gibba HOM05D004525 ORTHO05D005295 1.8e-56 223.0 192 63.0
Sp1g22150 Schrenkiella parvula HOM05D004525 ORTHO05D005295 3.2e-56 222.2 192 60.9
C07p19480 Brassica napus HOM05D001252 ORTHO05D005295 4.1e-56 221.9 191 62.3
Zm00001eb103320 Zea mays HOM05D004525 ORTHO05D005295 4.1e-56 221.9 168 71.4
MSTRG.24865 Avicennia marina HOM05D004525 ORTHO05D005295 7.0e-56 221.1 200 63.5
AUR62007057 Chenopodium quinoa HOM05D004525 ORTHO05D005295 7.0e-56 221.1 185 64.9
Aqoxy3G00526 Aquilegia oxysepala HOM05D004525 ORTHO05D005295 1.2e-55 220.3 185 65.4
Aqoxy5G04330 Aquilegia oxysepala HOM05D004525 ORTHO05D005295 1.2e-55 220.3 185 65.4
vmacro11499 Vaccinium macrocarpon HOM05D004525 ORTHO05D005295 1.2e-55 220.3 169 71.0
BcaB03g14082 Brassica carinata HOM05D004525 ORTHO05D005295 1.6e-55 219.9 193 61.7
CARHR212640 Cardamine hirsuta HOM05D004525 ORTHO05D005295 1.6e-55 219.9 185 63.8
Aa31LG9G260 Aethionema arabicum HOM05D004525 ORTHO05D005295 1.0e-54 217.2 207 58.9
Sc01g0010720 Simmondsia chinensis HOM05D004525 ORTHO05D005295 1.0e-54 217.2 199 60.3
Zm00001eb319380 Zea mays HOM05D004525 ORTHO05D005295 1.3e-54 216.9 188 66.5
Hund11348 Selenicereus undatus HOM05D004525 ORTHO05D005295 2.3e-54 216.1 162 67.9
PSO017G1681 Papaver somniferum HOM05D004525 ORTHO05D005295 3.0e-54 215.7 186 62.9
ATR0620G086 Amborella trichopoda HOM05D004525 ORTHO05D005295 5.0e-54 214.9 168 66.7
Lj8A200T57 Lonicera japonica HOM05D004525 ORTHO05D005295 8.6e-54 214.2 150 74.0
Carub.0001s2436 Capsella rubella HOM05D004525 ORTHO05D005295 1.9e-53 213.0 177 61.6
PSO478G2085 Papaver somniferum HOM05D004525 ORTHO05D005295 1.9e-53 213.0 186 62.4
HPP92_025871 Vanilla planifolia HOM05D004525 ORTHO05D005295 1.9e-53 213.0 182 63.7
MSTRG.12201 Avicennia marina HOM05D004525 ORTHO05D005295 9.5e-53 210.7 196 60.2
Ah.12g053230 Amaranthus hybridus HOM05D004525 ORTHO05D005295 1.6e-52 209.9 157 66.2
Psat7g074000 Pisum sativum HOM05D004525 ORTHO05D005295 1.6e-52 209.9 164 71.3
CANSAT56G2042 Cannabis sativa HOM05D004525 ORTHO05D005295 4.7e-52 208.4 206 57.3
AT5G41910 Arabidopsis thaliana HOM05D004525 ORTHO05D005295 8.0e-52 207.6 189 61.9
Os09g0528300 Oryza sativa ssp. japonica HOM05D004525 ORTHO05D005295 2.3e-51 206.1 158 69.0
AL7G47302 Arabidopsis lyrata HOM05D004525 ORTHO05D005295 4.0e-51 205.3 186 62.4
unitig_21.g20890 Utricularia gibba HOM05D004525 ORTHO05D005295 5.2e-51 204.9 195 59.5
CARHR025300 Cardamine hirsuta HOM05D004525 ORTHO05D005295 6.8e-51 204.5 186 59.7
CDE07G1557 Ceratophyllum demersum HOM05D004525 ORTHO05D005295 2.6e-50 202.6 165 65.5
FAN17G2704 Fragaria x ananassa HOM05D004525 ORTHO05D005295 2.6e-50 202.6 194 59.8
Psat7g072880 Pisum sativum HOM05D004525 ORTHO05D005295 1.7e-49 199.9 154 69.5
Atru.chr3.1913 Acer truncatum HOM05D004525 ORTHO05D005295 2.7e-47 192.6 165 62.4
BolC7t42467H Brassica oleracea HOM05D001252 ORTHO05D001661 3.5e-47 192.2 169 61.5
BraA09t39504Z Brassica rapa HOM05D004525 ORTHO05D005295 3.3e-45 185.7 176 55.1
FAN08G2166 Fragaria x ananassa HOM05D000319 ORTHO05D035382 1.2e-44 183.7 157 60.5
Peaxi162Scf01444g00013 Petunia axillaris HOM05D004525 ORTHO05D005295 1.8e-43 179.9 181 57.5
AUR62019920 Chenopodium quinoa HOM05D004525 ORTHO05D005295 3.7e-41 172.2 108 74.1
Oeu022035.1 Olea europaea HOM05D004525 ORTHO05D005295 3.7e-41 172.2 201 53.2
C05p24330 Brassica napus HOM05D004525 ORTHO05D005295 4.1e-40 168.7 144 61.1
TAR375G0036 Trochodendron aralioides HOM05D004525 ORTHO05D005295 4.6e-39 165.2 106 77.4
Cfa007058 Carpinus fangiana HOM05D004525 ORTHO05D005295 1.1e-37 160.6 136 66.9
MELO3C013773.2 Cucumis melo HOM05D004525 ORTHO05D005295 1.1e-37 160.6 230 46.5
Nitab4.5_0017193g0030 Nicotiana tabacum HOM05D004525 ORTHO05D005295 6.2e-36 154.8 173 52.6
FvH4_5g19692 Fragaria vesca HOM05D004525 ORTHO05D005295 1.4e-35 153.7 151 56.3
Peaxi162Scf00640g00032 Petunia axillaris HOM05D004525 ORTHO05D005295 8.9e-35 151.0 132 62.9
Mapoly0151s0039 Marchantia polymorpha HOM05D004525 ORTHO05D005295 3.4e-34 149.1 157 48.4
PGSC0003DMG400043501 Solanum tuberosum HOM05D004525 ORTHO05D005295 3.8e-33 145.6 126 62.7
PGSC0003DMG400008601 Solanum tuberosum HOM05D004525 ORTHO05D005295 6.4e-33 144.8 126 62.7
PGSC0003DMG400040735 Solanum tuberosum HOM05D004525 ORTHO05D005295 8.4e-33 144.4 125 63.2
PGSC0003DMG400017120 Solanum tuberosum HOM05D004525 ORTHO05D005295 3.2e-32 142.5 126 63.5
PGSC0003DMG400039131 Solanum tuberosum HOM05D004525 ORTHO05D005295 3.2e-32 142.5 123 61.0
BcaC05g26400 Brassica carinata HOM05D004525 ORTHO05D005295 7.8e-31 137.9 91 69.2
Actinidia27285 Actinidia chinensis HOM05D004525 ORTHO05D005295 1.0e-30 137.5 185 45.9
CAN.G6.3 Capsicum annuum HOM05D004525 ORTHO05D005295 1.3e-30 137.1 82 80.5
A09p40080 Brassica napus HOM05D004525 ORTHO05D005295 1.1e-29 134.0 106 63.2
Pp3c11_16910 Physcomitrium patens HOM05D004525 ORTHO05D005295 1.5e-29 133.7 146 45.2
SMO301G0053 Selaginella moellendorffii HOM05D004525 ORTHO05D005295 2.1e-28 129.8 149 47.0
AagrBONN_evm.TU.Sc2ySwM_117.1849 Anthoceros agrestis HOM05D004525 ORTHO05D005295 2.8e-28 129.4 177 40.7
AagrBONN_evm.TU.Sc2ySwM_368.381 Anthoceros agrestis HOM05D004525 ORTHO05D005295 6.9e-27 124.8 172 40.7
SEGI_32557 Sequoiadendron giganteum HOM05D004525 ORTHO05D005295 1.9e-24 116.7 134 47.0
Nitab4.5_0002724g0080 Nicotiana tabacum HOM05D004525 ORTHO05D005295 5.6e-21 105.1 115 53.0
CAN.G1631.10 Capsicum annuum HOM05D004525 ORTHO05D005295 1.3e-17 94.0 81 64.2
RcHm_v2.0_Chr7g0187021 Rosa chinensis HOM05D004525 ORTHO05D005295 1.9e-16 90.1 176 37.5
RcHm_v2.0_Chr5g0055281 Rosa chinensis HOM05D004525 ORTHO05D005295 3.9e-14 82.4 57 66.7
SGA_v2.0_scaffold104G30259 Striga asiatica HOM05D004525 ORTHO05D005295 6.9e-11 71.6 167 37.1
TAR374G0495 Trochodendron aralioides HOM05D004525 ORTHO05D005295 2.4e-08 63.2 106 43.4
BcaB05g21931 Brassica carinata HOM05D004525 ORTHO05D005295 6.7e-06 55.1 71 52.1


User provided reference genes

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