Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G15810 Trifolium pratense HOM05D006568 ORTHO05D008342 2.6e-275 951.4 490 100.0
Medtr4g116470 Medicago truncatula HOM05D006568 ORTHO05D008342 1.1e-241 839.7 490 88.4
Ca_21616_v3 Cicer arietinum L. HOM05D006568 ORTHO05D008342 4.1e-228 794.7 494 85.0
Lj4g0026005 Lotus japonicus HOM05D006568 ORTHO05D008342 9.9e-206 720.3 513 75.8
Glyma.13G165600 Glycine max HOM05D006568 ORTHO05D008342 2.9e-205 718.8 504 77.0
Glyma.17G105400 Glycine max HOM05D006568 ORTHO05D008342 7.1e-204 714.1 504 76.6
VMungo1215G2753 Vigna mungo HOM05D006568 ORTHO05D008342 1.6e-203 713.0 502 76.1
Phvul.003G174400 Phaseolus vulgaris HOM05D006568 ORTHO05D008342 4.8e-200 701.4 503 74.6
Lalb_Chr12g0198501 Lupinus albus HOM05D006568 ORTHO05D008342 5.8e-198 694.5 489 75.3
Duzib150G1168 Durio zibethinus HOM05D006568 ORTHO05D008342 3.0e-186 655.6 516 68.8
Thecc.09G141200 Theobroma cacao HOM05D006568 ORTHO05D008342 8.2e-184 647.5 517 68.5
COL.COLO4_24111 Corchorus olitorius HOM05D006568 ORTHO05D008342 2.0e-182 642.9 513 68.0
Manes.14G138200 Manihot esculenta HOM05D006568 ORTHO05D008342 2.2e-181 639.4 509 68.2
Haze_19324 Corylus avellana HOM05D006568 ORTHO05D008342 2.9e-181 639.0 507 67.5
Cfa020897 Carpinus fangiana HOM05D006568 ORTHO05D008342 3.8e-181 638.6 513 66.7
QL02p091184 Quercus lobata HOM05D006568 ORTHO05D008342 5.5e-180 634.8 539 64.9
Atru.chr7.233 Acer truncatum HOM05D006568 ORTHO05D008342 4.3e-177 625.2 498 66.7
CANSAT11G1359 Cannabis sativa HOM05D006568 ORTHO05D008342 1.7e-176 623.2 525 66.9
Potri.018G114600 Populus trichocarpa HOM05D006568 ORTHO05D008342 1.4e-175 620.2 532 65.0
RcHm_v2.0_Chr2g0086721 Rosa chinensis HOM05D006568 ORTHO05D008342 1.8e-175 619.8 493 69.0
Psat4g033400 Pisum sativum HOM05D006568 ORTHO05D008342 3.1e-175 619.0 387 86.6
Gohir.D06G049600 Gossypium hirsutum HOM05D006568 ORTHO05D008342 4.1e-175 618.6 496 68.5
Gohir.A06G050300 Gossypium hirsutum HOM05D006568 ORTHO05D008342 6.9e-175 617.8 496 68.1
Gorai.010G056500 Gossypium raimondii HOM05D006568 ORTHO05D008342 6.9e-175 617.8 496 68.3
FAN26G2488 Fragaria x ananassa HOM05D006568 ORTHO05D008342 1.3e-173 613.6 491 68.6
TWI63G0031 Tripterygium wilfordii HOM05D006568 ORTHO05D008342 1.1e-172 610.5 514 65.4
Duzib168G0355 Durio zibethinus HOM05D006568 ORTHO05D008342 2.5e-172 609.4 518 65.1
Prupe.7G255100 Prunus persica HOM05D006568 ORTHO05D008342 4.2e-172 608.6 515 66.2
FvH4_1g01760 Fragaria vesca HOM05D006568 ORTHO05D008342 4.7e-171 605.1 494 68.2
arahy.Tifrunner.gnm1.ann1.XD5HYR Arachis hypogaea HOM05D006568 ORTHO05D008342 1.0e-170 604.0 498 66.9
FAN19G0856 Fragaria x ananassa HOM05D006568 ORTHO05D008342 3.0e-170 602.4 494 68.0
FAN28G1334 Fragaria x ananassa HOM05D006568 ORTHO05D008342 5.1e-170 601.7 493 67.7
CiPaw.15G182900 Carya illinoinensis HOM05D006568 ORTHO05D008342 7.4e-169 597.8 514 64.0
Cpa.g.sc46.84 Carica papaya HOM05D006568 ORTHO05D008342 3.7e-168 595.5 510 63.7
arahy.Tifrunner.gnm1.ann1.9W3K41 Arachis hypogaea HOM05D006568 ORTHO05D008342 1.8e-167 593.2 511 65.4
Eucgr.C00440 Eucalyptus grandis HOM05D006568 ORTHO05D008342 2.4e-167 592.8 522 62.6
Sabra18G0097500 Salix brachista HOM05D006568 ORTHO05D008342 2.4e-167 592.8 530 62.3
Ciclev10007895m.g Citrus clementina HOM05D006568 ORTHO05D008342 2.0e-166 589.7 501 64.9
MD02G1013300 Malus domestica HOM05D006568 ORTHO05D008342 2.0e-166 589.7 507 65.7
MD15G1160100 Malus domestica HOM05D006568 ORTHO05D008342 1.0e-165 587.4 507 65.1
CsaV3_1G028460 Cucumis sativus L. HOM05D006568 ORTHO05D008342 3.6e-163 578.9 502 64.7
Rhsim03G0254700 Rhododendron simsii HOM05D006568 ORTHO05D008342 2.3e-162 576.2 503 62.0
Potri.006G190400 Populus trichocarpa HOM05D006568 ORTHO05D008342 6.7e-162 574.7 519 62.4
ClCG06G011990 Citrullus lanatus HOM05D006568 ORTHO05D008342 1.5e-161 573.5 505 64.4
CSS0018949 Camellia sinensis var. sinensis HOM05D006568 ORTHO05D008342 2.2e-160 569.7 510 61.8
MELO3C010267.2 Cucumis melo HOM05D006568 ORTHO05D008342 2.4e-159 566.2 503 63.6
GSVIVG01012889001 Vitis vinifera HOM05D006568 ORTHO05D008342 1.6e-155 553.5 488 62.7
Aqoxy7G03538 Aquilegia oxysepala HOM05D006568 ORTHO05D008342 5.7e-153 545.0 506 59.1
Oeu028734.1 Olea europaea HOM05D006568 ORTHO05D008342 1.3e-152 543.9 489 62.2
Sed0017332 Sechium edule HOM05D006568 ORTHO05D008342 2.8e-152 542.7 505 62.0
vmacro06105 Vaccinium macrocarpon HOM05D006568 ORTHO05D000801 8.3e-152 541.2 510 60.0
FAN23G2119 Fragaria x ananassa HOM05D006568 ORTHO05D008342 1.5e-148 530.4 492 62.6
PGR142G1115 Punica granatum HOM05D006568 ORTHO05D008342 4.2e-148 528.9 515 59.0
Hund21609 Selenicereus undatus HOM05D006568 ORTHO05D008342 2.1e-147 526.6 489 60.3
Cc06_g07460 Coffea canephora HOM05D006568 ORTHO05D008342 4.7e-147 525.4 505 59.2
Peaxi162Scf00391g00111 Petunia axillaris HOM05D006568 ORTHO05D008342 1.2e-145 520.8 539 57.3
Nitab4.5_0001021g0090 Nicotiana tabacum HOM05D006568 ORTHO05D008342 7.5e-145 518.1 512 60.0
CAN.G518.23 Capsicum annuum HOM05D006568 ORTHO05D008342 2.4e-143 513.1 498 59.6
Nitab4.5_0001555g0100 Nicotiana tabacum HOM05D006568 ORTHO05D008342 2.8e-139 499.6 524 56.9
DCAR_008870 Daucus carota HOM05D006568 ORTHO05D008342 6.1e-139 498.4 521 55.5
PGSC0003DMG400030734 Solanum tuberosum HOM05D006568 ORTHO05D008342 8.0e-139 498.0 520 56.3
Solyc07g007190.3 Solanum lycopersicum HOM05D006568 ORTHO05D008342 3.0e-138 496.1 517 56.7
Hma1.2p1_0182F.1_g080440 Hydrangea macrophylla HOM05D006568 ORTHO05D008342 6.8e-138 495.0 575 52.7
AUR62041444 Chenopodium quinoa HOM05D006568 ORTHO05D008342 9.8e-137 491.1 490 56.3
Lalb_Chr11g0072971 Lupinus albus HOM05D006568 ORTHO05D008342 1.7e-136 490.3 492 58.7
Sopen07g003240 Solanum pennellii HOM05D006568 ORTHO05D008342 8.3e-136 488.0 496 57.5
Dinv42917 Davidia involucrata HOM05D006568 ORTHO05D008342 1.1e-135 487.6 505 56.4
Dinv43183 Davidia involucrata HOM05D006568 ORTHO05D008342 1.1e-135 487.6 505 56.4
AUR62011262 Chenopodium quinoa HOM05D006568 ORTHO05D008342 5.4e-135 485.3 477 56.8
Sed0011467 Sechium edule HOM05D006568 ORTHO05D008342 1.0e-133 481.1 490 58.2
Nn2g12241 Nelumbo nucifera HOM05D006568 ORTHO05D008342 1.5e-132 477.2 496 55.0
Ah.14g078680 Amaranthus hybridus HOM05D006568 ORTHO05D008342 1.5e-129 467.2 481 55.7
Nn8g39711 Nelumbo nucifera HOM05D006568 ORTHO05D008342 1.0e-125 454.5 428 58.6
EL10Ac8g18826 Beta vulgaris HOM05D006568 ORTHO05D008342 1.7e-125 453.8 496 53.0
Lj6g0005589 Lotus japonicus HOM05D006568 ORTHO05D008342 1.3e-120 437.6 492 54.5
MBI15_g47023_MAGBIO Magnolia biondii HOM05D006568 ORTHO05D008342 2.2e-120 436.8 521 50.7
Lj3C820G3 Lonicera japonica HOM05D006568 ORTHO05D008342 4.9e-120 435.6 528 51.7
MSTRG.26320 Avicennia marina HOM05D006568 ORTHO05D008342 2.1e-118 430.3 495 52.9
ATR0629G030 Amborella trichopoda HOM05D006568 ORTHO05D008342 3.5e-118 429.5 508 50.0
Migut.K00383 Erythranthe guttata HOM05D006568 ORTHO05D008342 6.0e-118 428.7 510 51.4
Glyma.15G201700 Glycine max HOM05D006568 ORTHO05D008342 3.0e-117 426.4 484 52.9
Lj3A817T81 Lonicera japonica HOM05D006568 ORTHO05D008342 8.6e-117 424.9 510 52.0
Phvul.009G209900 Phaseolus vulgaris HOM05D006568 ORTHO05D008342 8.9e-114 414.8 493 50.9
MSTRG.6088 Avicennia marina HOM05D006568 ORTHO05D008342 3.4e-113 412.9 470 51.9
SalBow1G3333 Salvia bowleyana HOM05D006568 ORTHO05D008342 3.4e-113 412.9 468 52.8
VMungo1309G2996 Vigna mungo HOM05D006568 ORTHO05D008342 1.2e-110 404.4 498 50.2
Oeu040792.1 Olea europaea HOM05D006568 ORTHO05D008342 7.8e-110 401.7 424 55.9
SHI03244 Sapria himalayana HOM05D006568 ORTHO05D008342 7.8e-110 401.7 469 49.5
Dinv22137 Davidia involucrata HOM05D006568 ORTHO05D008342 3.0e-109 399.8 442 54.3
HanXRQChr03g0063991 Helianthus annuus HOM05D006568 ORTHO05D008342 3.6e-107 392.9 523 47.8
ECA240G0509 Erigeron canadensis HOM05D006568 ORTHO05D008342 3.2e-103 379.8 481 48.4
Dinv41428 Davidia involucrata HOM05D006568 ORTHO05D008342 4.6e-94 349.4 345 58.8
SalBow1G7296 Salvia bowleyana HOM05D006568 ORTHO05D008342 2.0e-89 334.0 511 44.0
HPP92_005342 Vanilla planifolia HOM05D006568 ORTHO05D008342 7.6e-89 332.0 505 42.8
Migut.J01268 Erythranthe guttata HOM05D006568 ORTHO05D008342 3.2e-87 326.6 514 44.7
Os09g0556800 Oryza sativa ssp. japonica HOM05D006568 ORTHO05D008342 1.5e-81 307.8 503 42.1
Lsat_1_v5_gn_7_47940 Lactuca sativa HOM05D006568 ORTHO05D008342 1.7e-80 304.3 490 41.6
SEGI_32321 Sequoiadendron giganteum HOM05D006568 ORTHO05D008342 6.5e-80 302.4 555 37.1
Zm00001eb320530 Zea mays HOM05D006568 ORTHO05D008342 9.3e-79 298.5 498 40.6
Actinidia26349 Actinidia chinensis HOM05D006568 ORTHO05D008342 5.1e-77 292.7 326 53.7
TAR636G2103 Trochodendron aralioides HOM05D006568 ORTHO05D008342 1.1e-76 291.6 307 54.4
SEGI_41462 Sequoiadendron giganteum HOM05D006568 ORTHO05D008342 1.1e-74 285.0 544 38.1
Actinidia38696 Actinidia chinensis HOM05D006568 ORTHO05D008342 3.3e-68 263.5 223 62.3
SGA_v2.0_scaffold229G43344 Striga asiatica HOM05D006568 ORTHO05D008342 3.4e-65 253.4 392 41.6
MBI15_g45924_MAGBIO Magnolia biondii HOM05D006568 ORTHO05D008342 1.3e-64 251.5 296 50.7
Actinidia38697 Actinidia chinensis HOM05D006568 ORTHO05D008342 3.9e-61 240.0 213 61.5
PSO782G3486 Papaver somniferum HOM05D006568 ORTHO05D008342 4.5e-57 226.5 369 43.9
AagrBONN_evm.TU.Sc2ySwM_228.5766 Anthoceros agrestis HOM05D006568 ORTHO05D008342 2.2e-51 207.6 539 30.8
Mapoly0083s0072 Marchantia polymorpha HOM05D006568 ORTHO05D008342 1.8e-45 188.0 582 30.1
SMO172G0216 Selaginella moellendorffii HOM05D006568 ORTHO05D008342 1.4e-37 161.8 508 30.3
Zm00001eb104550 Zea mays HOM05D006568 ORTHO05D008342 5.2e-37 159.8 356 34.3
unitig_27.g25107 Utricularia gibba HOM05D006568 ORTHO05D008342 1.3e-35 155.2 151 55.6
TAR636G1038 Trochodendron aralioides HOM05D006568 ORTHO05D008342 8.5e-32 142.5 87 75.9
Medtr8g014610 Medicago truncatula HOM05D006568 ORTHO05D258972 1.8e-18 98.2 66 75.8
Dinv22138 Davidia involucrata HOM05D006568 ORTHO05D008342 5.6e-15 86.7 61 70.5
Medtr4g116465 Medicago truncatula HOM05D006568 ORTHO05D008342 7.5e-12 76.3 48 75.0
Oeu060513.1 Olea europaea HOM05D006568 ORTHO05D008342 7.8e-09 66.2 52 63.5
SMO172G0023 Selaginella moellendorffii HOM05D006568 ORTHO05D008342 2.3e-08 64.7 47 66.0
Peaxi162Scf00370g00114 Petunia axillaris HOM05D006568 ORTHO05D008342 1.6e-06 58.5 114 41.2


User provided reference genes

Program Settings