Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G15698 Trifolium pratense HOM05D004272 ORTHO05D005020 6.5e-57 223.8 110 100.0
TPR.G15693 Trifolium pratense HOM05D004272 ORTHO05D005020 4.9e-44 181.0 101 85.1
Ca_10628_v3 Cicer arietinum L. HOM05D004272 ORTHO05D005020 1.4e-43 179.5 90 92.2
Medtr1g096990 Medicago truncatula HOM05D004272 ORTHO05D005020 7.0e-43 177.2 101 82.2
Phvul.007G087900 Phaseolus vulgaris HOM05D004272 ORTHO05D005020 1.2e-42 176.4 90 90.0
VMungo0720G1438 Vigna mungo HOM05D004272 ORTHO05D005020 1.2e-42 176.4 90 90.0
Lalb_Chr06g0161911 Lupinus albus HOM05D004272 ORTHO05D005020 1.7e-41 172.6 88 89.8
Glyma.10G218100 Glycine max HOM05D004272 ORTHO05D005020 1.9e-40 169.1 101 77.2
Lj5g0022070 Lotus japonicus HOM05D004272 ORTHO05D005020 9.5e-40 166.8 101 78.2
Glyma.20G173700 Glycine max HOM05D004272 ORTHO05D005020 1.2e-39 166.4 101 77.2
Haze_17897 Corylus avellana HOM05D004272 ORTHO05D005020 3.6e-39 164.9 88 81.8
CiPaw.16G063800 Carya illinoinensis HOM05D004272 ORTHO05D005020 4.7e-39 164.5 91 79.1
ClCG09G010370 Citrullus lanatus HOM05D004272 ORTHO05D005020 6.2e-39 164.1 93 77.4
Nn5g27830 Nelumbo nucifera HOM05D004272 ORTHO05D005020 1.1e-38 163.3 101 72.3
CARHR289070 Cardamine hirsuta HOM05D004272 ORTHO05D005020 1.4e-38 162.9 90 81.1
arahy.Tifrunner.gnm1.ann1.E3548W Arachis hypogaea HOM05D004272 ORTHO05D005020 1.8e-38 162.5 101 73.3
Sp5g26920 Schrenkiella parvula HOM05D004272 ORTHO05D005020 1.8e-38 162.5 101 73.3
SpUn0020_0060 Schrenkiella parvula HOM05D004272 ORTHO05D005020 1.8e-38 162.5 101 73.3
arahy.Tifrunner.gnm1.ann1.6Q1IL7 Arachis hypogaea HOM05D004272 ORTHO05D005020 3.1e-38 161.8 101 73.3
arahy.Tifrunner.gnm1.ann1.CBRY2G Arachis hypogaea HOM05D004272 ORTHO05D005020 3.1e-38 161.8 101 73.3
AL2G31440 Arabidopsis lyrata HOM05D004272 ORTHO05D005020 4.0e-38 161.4 90 78.9
Ciclev10001727m.g Citrus clementina HOM05D004272 ORTHO05D005020 5.2e-38 161.0 101 71.3
AUR62004668 Chenopodium quinoa HOM05D004272 ORTHO05D005020 8.9e-38 160.2 101 71.3
Carub.0002s1862 Capsella rubella HOM05D004272 ORTHO05D005020 1.2e-37 159.8 101 71.3
FAN20G0830 Fragaria x ananassa HOM05D004272 ORTHO05D005020 1.5e-37 159.5 94 73.4
FAN27G2909 Fragaria x ananassa HOM05D004272 ORTHO05D005020 1.5e-37 159.5 94 73.4
MD05G1039700 Malus domestica HOM05D004272 ORTHO05D005020 1.5e-37 159.5 94 74.5
QL02p034274 Quercus lobata HOM05D004272 ORTHO05D005020 1.5e-37 159.5 101 69.3
AT1G71860 Arabidopsis thaliana HOM05D004272 ORTHO05D005020 2.0e-37 159.1 90 77.8
Thhalv10018624m.g Eutrema salsugineum HOM05D004272 ORTHO05D005020 2.0e-37 159.1 90 77.8
Thecc.08G200200 Theobroma cacao HOM05D004272 ORTHO05D005020 2.0e-37 159.1 101 74.3
Lj7C302G8 Lonicera japonica HOM05D004272 ORTHO05D005020 2.6e-37 158.7 101 70.3
Prupe.8G052200 Prunus persica HOM05D004272 ORTHO05D005020 2.6e-37 158.7 88 79.5
CiPaw.15G083400 Carya illinoinensis HOM05D004272 ORTHO05D005020 3.4e-37 158.3 94 73.4
RcHm_v2.0_Chr6g0272381 Rosa chinensis HOM05D004272 ORTHO05D005020 4.4e-37 157.9 94 72.3
TWI60G0092 Tripterygium wilfordii HOM05D004272 ORTHO05D005020 4.4e-37 157.9 101 71.3
Aa31LG4G8760 Aethionema arabicum HOM05D004272 ORTHO05D005020 5.8e-37 157.5 101 71.3
FvH4_2g12360 Fragaria vesca HOM05D004272 ORTHO05D005020 5.8e-37 157.5 94 72.3
FAN24G2414 Fragaria x ananassa HOM05D004272 ORTHO05D005020 5.8e-37 157.5 94 72.3
Gohir.D09G113700 Gossypium hirsutum HOM05D004272 ORTHO05D005020 7.5e-37 157.1 101 70.3
Sabra13G0097600 Salix brachista HOM05D004272 ORTHO05D005020 7.5e-37 157.1 101 68.3
Manes.02G190000 Manihot esculenta HOM05D004272 ORTHO05D005020 9.8e-37 156.8 101 68.3
Potri.013G115400 Populus trichocarpa HOM05D004272 ORTHO05D005020 9.8e-37 156.8 101 68.3
Solyc11g016990.3 Solanum lycopersicum HOM05D004272 ORTHO05D005020 9.8e-37 156.8 88 81.8
THA.LOC104800104 Tarenaya hassleriana HOM05D004272 ORTHO05D005020 9.8e-37 156.8 101 73.3
MELO3C018159.2 Cucumis melo HOM05D004272 ORTHO05D005020 1.7e-36 156.0 95 73.7
Manes.18G099100 Manihot esculenta HOM05D004272 ORTHO05D005020 2.2e-36 155.6 101 70.3
Sc01g0001660 Simmondsia chinensis HOM05D004272 ORTHO05D005020 2.2e-36 155.6 106 67.0
Dinv12903 Davidia involucrata HOM05D004272 ORTHO05D005020 2.9e-36 155.2 88 76.1
Ah.05g177840 Amaranthus hybridus HOM05D004272 ORTHO05D005020 3.7e-36 154.8 101 70.3
EL10Ac1g00062 Beta vulgaris HOM05D004272 ORTHO05D005020 3.7e-36 154.8 101 70.3
Gohir.A09G116800 Gossypium hirsutum HOM05D004272 ORTHO05D005020 3.7e-36 154.8 101 69.3
Gorai.006G131400 Gossypium raimondii HOM05D004272 ORTHO05D005020 3.7e-36 154.8 101 69.3
AUR62023587 Chenopodium quinoa HOM05D004272 ORTHO05D005020 4.9e-36 154.5 101 69.3
Cc00_g04120 Coffea canephora HOM05D004272 ORTHO05D005020 4.9e-36 154.5 88 78.4
Cpa.g.sc64.134 Carica papaya HOM05D004272 ORTHO05D005020 6.4e-36 154.1 101 68.3
Oeu030010.1 Olea europaea HOM05D004272 ORTHO05D005020 6.4e-36 154.1 88 77.3
Atru.chr13.1851 Acer truncatum HOM05D004272 ORTHO05D005020 8.3e-36 153.7 101 70.3
Rhsim06G0099300 Rhododendron simsii HOM05D004272 ORTHO05D005020 1.1e-35 153.3 88 77.3
Sopen11g008950 Solanum pennellii HOM05D004272 ORTHO05D005020 1.1e-35 153.3 88 80.7
TAR381G1009 Trochodendron aralioides HOM05D004272 ORTHO05D005020 1.4e-35 152.9 102 65.7
BcaC08g46618 Brassica carinata HOM05D004272 ORTHO05D005020 1.9e-35 152.5 85 78.8
MD10G1045300 Malus domestica HOM05D004272 ORTHO05D005020 2.4e-35 152.1 94 70.2
Oeu004773.1 Olea europaea HOM05D004272 ORTHO05D005020 2.4e-35 152.1 88 77.3
CAN.G61.12 Capsicum annuum HOM05D004272 ORTHO05D005020 3.2e-35 151.8 88 78.4
CsaV3_7G024250 Cucumis sativus L. HOM05D004272 ORTHO05D005020 5.4e-35 151.0 101 70.3
Duzib116G0407 Durio zibethinus HOM05D004272 ORTHO05D005020 5.4e-35 151.0 88 78.4
Sed0022323 Sechium edule HOM05D004272 ORTHO05D005020 5.4e-35 151.0 95 71.6
Migut.N03339 Erythranthe guttata HOM05D004272 ORTHO05D005020 7.0e-35 150.6 88 76.1
Peaxi162Scf00268g01426 Petunia axillaris HOM05D004272 ORTHO05D005020 7.0e-35 150.6 88 75.0
Hund16809 Selenicereus undatus HOM05D004272 ORTHO05D005020 1.2e-34 149.8 90 73.3
CSS0015299 Camellia sinensis var. sinensis HOM05D004272 ORTHO05D005020 1.6e-34 149.4 88 75.0
Solyc06g065480.4 Solanum lycopersicum HOM05D004272 ORTHO05D005020 1.6e-34 149.4 93 73.1
GSVIVG01034890001 Vitis vinifera HOM05D004272 ORTHO05D005020 1.6e-34 149.4 88 76.1
Nitab4.5_0000159g0070 Nicotiana tabacum HOM05D004272 ORTHO05D005020 2.1e-34 149.1 88 77.3
Nitab4.5_0006059g0040 Nicotiana tabacum HOM05D004272 ORTHO05D005020 3.5e-34 148.3 88 75.0
Rhsim11G0061700 Rhododendron simsii HOM05D004272 ORTHO05D005020 3.5e-34 148.3 88 76.1
Rhsim11G0063200 Rhododendron simsii HOM05D004272 ORTHO05D005020 3.5e-34 148.3 88 76.1
Sopen06g023970 Solanum pennellii HOM05D004272 ORTHO05D005020 3.5e-34 148.3 88 73.9
Hma1.2p1_0510F.1_g168790 Hydrangea macrophylla HOM05D004272 ORTHO05D005020 4.6e-34 147.9 88 72.7
PSO170G2262 Papaver somniferum HOM05D004272 ORTHO05D005020 4.6e-34 147.9 90 74.4
Hund27072 Selenicereus undatus HOM05D004272 ORTHO05D005020 4.6e-34 147.9 88 77.3
BcaC08g46620 Brassica carinata HOM05D004272 ORTHO05D005020 6.0e-34 147.5 102 66.7
C06p45930 Brassica napus HOM05D004272 ORTHO05D005020 6.0e-34 147.5 102 66.7
BolC6t39646H Brassica oleracea HOM05D004272 ORTHO05D005020 6.0e-34 147.5 102 66.7
DCAR_010068 Daucus carota HOM05D004272 ORTHO05D005020 6.0e-34 147.5 101 66.3
SalBow6G0059 Salvia bowleyana HOM05D004272 ORTHO05D005020 6.0e-34 147.5 101 68.3
SalBow6G4901 Salvia bowleyana HOM05D004272 ORTHO05D005020 6.0e-34 147.5 101 68.3
Hund16808 Selenicereus undatus HOM05D004272 ORTHO05D005020 6.0e-34 147.5 92 72.8
SGA_v2.0_scaffold149G36610 Striga asiatica HOM05D004272 ORTHO05D005020 6.0e-34 147.5 101 66.3
HanXRQChr13g0388201 Helianthus annuus HOM05D004272 ORTHO05D005020 7.8e-34 147.1 101 68.3
CAN.G199.25 Capsicum annuum HOM05D004272 ORTHO05D005020 1.0e-33 146.7 90 73.3
SGA_v2.0_scaffold483G52343 Striga asiatica HOM05D004272 ORTHO05D005020 1.0e-33 146.7 101 66.3
CANSAT25G2208 Cannabis sativa HOM05D004272 ORTHO05D005020 1.7e-33 146.0 88 71.6
Eucgr.F04145 Eucalyptus grandis HOM05D004272 ORTHO05D005020 1.7e-33 146.0 90 70.0
A07p38020 Brassica napus HOM05D004272 ORTHO05D005020 5.0e-33 144.4 102 65.7
BraA07t31367Z Brassica rapa HOM05D004272 ORTHO05D005020 5.0e-33 144.4 102 65.7
Aqoxy6G00139 Aquilegia oxysepala HOM05D004272 ORTHO05D005020 6.6e-33 144.1 101 67.3
vmacro00781 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 6.6e-33 144.1 88 75.0
RcHm_v2.0_Chr3g0456471 Rosa chinensis HOM05D004272 ORTHO05D005020 8.6e-33 143.7 92 71.7
HPP92_003132 Vanilla planifolia HOM05D004272 ORTHO05D005020 8.6e-33 143.7 94 69.1
Actinidia02597 Actinidia chinensis HOM05D004272 ORTHO05D005020 2.5e-32 142.1 88 71.6
Lsat_1_v5_gn_5_157280 Lactuca sativa HOM05D004272 ORTHO05D005020 9.5e-32 140.2 88 71.6
HanXRQChr13g0388211 Helianthus annuus HOM05D004272 ORTHO05D005020 1.6e-31 139.4 102 61.8
Prupe.1G402600 Prunus persica HOM05D004272 ORTHO05D005020 1.6e-31 139.4 94 67.0
Nitab4.5_0003518g0050 Nicotiana tabacum HOM05D004272 ORTHO05D005020 2.1e-31 139.0 89 74.2
vmacro12508 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 8.1e-31 137.1 99 64.6
RcHm_v2.0_Chr7g0181531 Rosa chinensis HOM05D004272 ORTHO05D005020 1.4e-30 136.3 92 66.3
FAN18G3209 Fragaria x ananassa HOM05D004272 ORTHO05D005020 1.8e-30 136.0 92 68.5
Migut.C01228 Erythranthe guttata HOM05D004272 ORTHO05D005020 2.3e-30 135.6 87 72.4
SHI09047 Sapria himalayana HOM05D004272 ORTHO05D005020 2.3e-30 135.6 101 60.4
FvH4_5g14850 Fragaria vesca HOM05D004272 ORTHO05D005020 4.0e-30 134.8 92 67.4
FAN08G2250 Fragaria x ananassa HOM05D004272 ORTHO05D005020 4.0e-30 134.8 92 67.4
FAN13G2363 Fragaria x ananassa HOM05D004272 ORTHO05D005020 4.0e-30 134.8 92 67.4
PSO170G2167 Papaver somniferum HOM05D004272 ORTHO05D005020 6.8e-30 134.0 101 61.4
unitig_61.g26072 Utricularia gibba HOM05D004272 ORTHO05D005020 6.8e-30 134.0 106 61.3
ATR0687G002 Amborella trichopoda HOM05D004272 ORTHO05D005020 1.2e-29 133.3 90 65.6
Nitab4.5_0029014g0010 Nicotiana tabacum HOM05D004272 ORTHO05D005020 1.2e-29 133.3 102 61.8
MD09G1287400 Malus domestica HOM05D004272 ORTHO05D005020 2.0e-29 132.5 91 65.9
SEGI_33079 Sequoiadendron giganteum HOM05D004272 ORTHO05D005020 5.8e-29 131.0 88 65.9
PSO782G4024 Papaver somniferum HOM05D004272 ORTHO05D005020 9.9e-29 130.2 88 64.8
ECA248G3752 Erigeron canadensis HOM05D004272 ORTHO05D005020 3.7e-28 128.3 88 68.2
DCAR_014268 Daucus carota HOM05D004272 ORTHO05D005020 3.9e-25 118.2 101 57.4
Os11g0180200 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 4.3e-24 114.8 82 67.1
Pp3c13_6130 Physcomitrium patens HOM05D004272 ORTHO05D005020 4.7e-23 111.3 87 54.0
Pp3c3_2290 Physcomitrium patens HOM05D004272 ORTHO05D005020 1.8e-22 109.4 97 52.6
Dinv41680 Davidia involucrata HOM05D004272 ORTHO05D005020 6.8e-22 107.5 70 68.6
Mapoly0167s0026 Marchantia polymorpha HOM05D004272 ORTHO05D005020 4.4e-21 104.8 88 52.3
Psat6g189360 Pisum sativum HOM05D004272 ORTHO05D005020 1.9e-19 99.4 61 72.1
AagrBONN_evm.TU.Sc2ySwM_228.1486 Anthoceros agrestis HOM05D004272 ORTHO05D005020 2.4e-19 99.0 82 52.4
Os12g0174800 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 3.2e-19 98.6 83 57.8
CDE12G0366 Ceratophyllum demersum HOM05D004272 ORTHO05D005020 2.1e-18 95.9 55 74.5
SMO347G0125 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 2.7e-18 95.5 86 50.0
CBR_g17924 Chara braunii HOM05D004272 ORTHO05D005020 6.0e-18 94.4 87 49.4
ECA248G0749 Erigeron canadensis HOM05D004272 ORTHO05D005020 1.5e-16 89.7 64 62.5
MELO3C023674.2 Cucumis melo HOM05D004272 ORTHO05D005020 2.5e-16 89.0 55 69.1
CBR_g49956 Chara braunii HOM05D004272 ORTHO05D005020 2.0e-13 79.3 85 47.1
CBR_g53623 Chara braunii HOM05D004272 ORTHO05D005020 5.8e-13 77.8 85 36.5
Psat6g014560 Pisum sativum HOM05D004272 ORTHO05D005020 9.9e-13 77.0 49 73.5
CBR_g53619 Chara braunii HOM05D004272 ORTHO05D005020 3.8e-12 75.1 88 36.4
SMO351G0156 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 4.9e-12 74.7 80 48.8
Potri.019G086001 Populus trichocarpa HOM05D004272 ORTHO05D005020 8.4e-12 73.9 56 55.4
SMO115G0188 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 7.1e-11 70.9 85 42.4
SMO119G0089 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 9.3e-11 70.5 90 37.8
SMO166G0076 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 9.3e-11 70.5 85 42.4
Glyma.20G173900 Glycine max HOM05D004272 ORTHO05D005020 2.3e-09 65.9 40 77.5
SGA_v2.0_scaffold1053G53812 Striga asiatica HOM05D004272 ORTHO05D005020 3.0e-09 65.5 40 70.0
SGA_v2.0_scaffold322G48619 Striga asiatica HOM05D004272 ORTHO05D005020 3.0e-09 65.5 40 70.0
Cre12.g524450 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 3.9e-09 65.1 64 46.9
SGA_v2.0_scaffold386G50488 Striga asiatica HOM05D004272 ORTHO05D005020 6.6e-09 64.3 40 67.5
Cre09.g389949 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 1.1e-08 63.5 79 41.8
Zm00001eb138930 Zea mays HOM05D004272 ORTHO05D005020 1.5e-08 63.2 43 65.1
Haze_26606 Corylus avellana HOM05D004272 ORTHO05D005020 2.5e-08 62.4 93 37.6
PSO170G3665 Papaver somniferum HOM05D004272 ORTHO05D005020 7.3e-08 60.8 40 67.5
Haze_26549 Corylus avellana HOM05D004272 ORTHO05D005020 8.1e-07 57.4 57 45.6
Zm00001eb091350 Zea mays HOM05D004272 ORTHO05D005020 3.1e-06 55.5 39 66.7


User provided reference genes

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