Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G15652 Trifolium pratense HOM05D004606 ORTHO05D005086 2.4e-184 648.7 319 100.0
TPR.G15650 Trifolium pratense HOM05D004606 ORTHO05D005086 9.8e-146 520.4 402 68.7
Medtr1g011690 Medicago truncatula HOM05D004606 ORTHO05D005086 1.4e-139 500.0 402 65.4
Ca_13137_v3 Cicer arietinum L. HOM05D004606 ORTHO05D005086 6.8e-139 497.7 401 65.3
Ca_12923_v3 Cicer arietinum L. HOM05D004606 ORTHO05D005086 3.0e-134 482.3 400 63.2
Phvul.001G053900 Phaseolus vulgaris HOM05D004606 ORTHO05D005086 2.2e-129 466.1 404 60.9
Lj5g0014776 Lotus japonicus HOM05D004606 ORTHO05D005086 4.1e-128 461.8 396 60.6
Glyma.17G206700 Glycine max HOM05D004606 ORTHO05D005086 2.8e-124 449.1 259 83.0
arahy.Tifrunner.gnm1.ann1.K28DE3 Arachis hypogaea HOM05D004606 ORTHO05D005086 3.6e-124 448.7 397 59.9
Lalb_Chr22g0361571 Lupinus albus HOM05D004606 ORTHO05D005086 2.0e-122 443.0 402 59.2
VMungo0647G1004 Vigna mungo HOM05D004606 ORTHO05D005086 1.2e-119 433.7 247 83.0
GSVIVG01035774001 Vitis vinifera HOM05D004606 ORTHO05D005086 6.6e-118 427.9 394 56.1
Psat6g030120 Pisum sativum HOM05D004606 ORTHO05D005086 9.6e-117 424.1 403 58.1
Medtr1g011700 Medicago truncatula HOM05D004606 ORTHO05D005086 1.7e-113 413.3 382 59.7
Hma1.2p1_0000F.1_g000990 Hydrangea macrophylla HOM05D004606 ORTHO05D005086 2.9e-113 412.5 394 53.3
TWI63G0154 Tripterygium wilfordii HOM05D004606 ORTHO05D005086 3.8e-113 412.1 393 53.9
Potri.018G032500 Populus trichocarpa HOM05D004606 ORTHO05D005086 4.9e-113 411.8 400 54.2
Oeu031575.3 Olea europaea HOM05D004606 ORTHO05D005086 8.4e-113 411.0 397 54.2
Rhsim02G0193100 Rhododendron simsii HOM05D004606 ORTHO05D005086 2.4e-112 409.5 249 75.9
CiPaw.07G219400 Carya illinoinensis HOM05D004606 ORTHO05D005086 7.1e-112 407.9 401 53.1
Sabra18G0033400 Salix brachista HOM05D004606 ORTHO05D005086 9.3e-112 407.5 400 52.8
MD15G1118300 Malus domestica HOM05D004606 ORTHO05D005086 1.2e-111 407.1 396 52.8
RcHm_v2.0_Chr6g0298811 Rosa chinensis HOM05D004606 ORTHO05D005086 1.2e-111 407.1 396 52.8
QL04p042484 Quercus lobata HOM05D004606 ORTHO05D005086 4.6e-111 405.2 395 54.2
TAR626G1705 Trochodendron aralioides HOM05D004606 ORTHO05D005086 4.6e-111 405.2 396 52.3
vmacro11130 Vaccinium macrocarpon HOM05D004606 ORTHO05D005086 1.0e-110 404.1 247 75.7
Ciclev10008268m.g Citrus clementina HOM05D004606 ORTHO05D005086 1.3e-110 403.7 395 52.9
FAN15G1610 Fragaria x ananassa HOM05D004606 ORTHO05D005086 1.7e-110 403.3 396 51.8
Cfa013195 Carpinus fangiana HOM05D004606 ORTHO05D005086 3.0e-110 402.5 247 75.3
Nn2g11896 Nelumbo nucifera HOM05D004606 ORTHO05D005086 5.1e-110 401.7 395 52.4
FvH4_2g29790 Fragaria vesca HOM05D004606 ORTHO05D005086 6.6e-110 401.4 396 51.3
Prupe.1G471700 Prunus persica HOM05D004606 ORTHO05D005086 1.1e-109 400.6 247 74.9
arahy.Tifrunner.gnm1.ann1.Z34R6V Arachis hypogaea HOM05D004606 ORTHO05D005086 1.5e-109 400.2 389 56.0
MD08G1141800 Malus domestica HOM05D004606 ORTHO05D005086 2.5e-109 399.4 396 51.3
Lj7C716G6 Lonicera japonica HOM05D004606 ORTHO05D005086 4.3e-109 398.7 400 51.2
MBI04_g33818_MAGBIO Magnolia biondii HOM05D004606 ORTHO05D005086 5.6e-109 398.3 398 51.3
Oeu045190.1 Olea europaea HOM05D004606 ORTHO05D005086 5.6e-109 398.3 417 51.3
CSS0017380 Camellia sinensis var. sinensis HOM05D004606 ORTHO05D005086 9.6e-109 397.5 247 74.1
Sed0001356 Sechium edule HOM05D004606 ORTHO05D005086 1.3e-108 397.1 393 52.9
Duzib187G0213 Durio zibethinus HOM05D004606 ORTHO05D005086 2.8e-108 396.0 400 52.2
Manes.16G118200 Manihot esculenta HOM05D004606 ORTHO05D005086 3.6e-108 395.6 397 52.6
Peaxi162Scf00251g01122 Petunia axillaris HOM05D004606 ORTHO05D005086 4.8e-108 395.2 395 52.2
FAN24G2357 Fragaria x ananassa HOM05D004606 ORTHO05D005086 1.4e-107 393.7 396 50.3
QL04p042370 Quercus lobata HOM05D004606 ORTHO05D005086 4.0e-107 392.1 247 74.1
Gorai.013G110500 Gossypium raimondii HOM05D004606 ORTHO05D005086 6.9e-107 391.3 396 52.3
QL04p042401 Quercus lobata HOM05D004606 ORTHO05D005086 6.9e-107 391.3 247 73.7
CsaV3_2G031750 Cucumis sativus L. HOM05D004606 ORTHO05D005086 9.0e-107 391.0 399 50.6
Migut.A00299 Erythranthe guttata HOM05D004606 ORTHO05D005086 1.2e-106 390.6 258 70.2
Thecc.09G147400 Theobroma cacao HOM05D004606 ORTHO05D005086 1.2e-106 390.6 395 52.7
PGSC0003DMG400025535 Solanum tuberosum HOM05D004606 ORTHO05D005086 1.5e-106 390.2 395 51.9
MELO3C011226.2 Cucumis melo HOM05D004606 ORTHO05D005086 2.0e-106 389.8 399 50.1
Nitab4.5_0002339g0060 Nicotiana tabacum HOM05D004606 ORTHO05D005086 2.0e-106 389.8 245 73.1
COL.COLO4_24007 Corchorus olitorius HOM05D004606 ORTHO05D005086 2.6e-106 389.4 248 73.8
Nitab4.5_0000508g0210 Nicotiana tabacum HOM05D004606 ORTHO05D005086 3.8e-105 385.6 245 72.7
Oeu045188.1 Olea europaea HOM05D004606 ORTHO05D005086 4.9e-105 385.2 395 50.1
Solyc08g067470.3 Solanum lycopersicum HOM05D004606 ORTHO05D005086 6.4e-105 384.8 245 71.8
Cc11_g01620 Coffea canephora HOM05D004606 ORTHO05D005086 8.4e-105 384.4 247 69.6
Gohir.A02G109707 Gossypium hirsutum HOM05D004606 ORTHO05D005086 1.9e-104 383.3 398 51.5
Sopen08g021410 Solanum pennellii HOM05D004606 ORTHO05D005086 1.9e-104 383.3 245 72.2
CSS0006183 Camellia sinensis var. sinensis HOM05D004606 ORTHO05D005086 2.4e-104 382.9 247 72.5
TAR626G0087 Trochodendron aralioides HOM05D004606 ORTHO05D005086 2.4e-104 382.9 247 70.0
AUR62041849 Chenopodium quinoa HOM05D004606 ORTHO05D005086 4.2e-104 382.1 249 69.9
Eucgr.L01636 Eucalyptus grandis HOM05D004606 ORTHO05D005086 5.4e-104 381.7 371 52.0
PGR044G0860 Punica granatum HOM05D004606 ORTHO05D005086 7.1e-104 381.3 397 51.9
AUR62032354 Chenopodium quinoa HOM05D004606 ORTHO05D005086 4.6e-103 378.6 247 69.2
Ciclev10010301m.g Citrus clementina HOM05D004606 ORTHO05D005086 7.9e-103 377.9 247 69.2
A10p26400 Brassica napus HOM05D004606 ORTHO05D005086 2.3e-102 376.3 380 52.4
ECA233G1913 Erigeron canadensis HOM05D004606 ORTHO05D005086 2.3e-102 376.3 247 68.8
Lsat_1_v5_gn_1_40980 Lactuca sativa HOM05D004606 ORTHO05D005086 3.0e-102 375.9 398 48.7
Thhalv10013697m.g Eutrema salsugineum HOM05D004606 ORTHO05D005086 6.7e-102 374.8 380 53.2
EL10Ac2g02564 Beta vulgaris HOM05D004606 ORTHO05D005086 8.7e-102 374.4 395 48.6
Migut.A00292 Erythranthe guttata HOM05D004606 ORTHO05D005086 1.9e-101 373.2 403 48.4
PSO017G2258 Papaver somniferum HOM05D004606 ORTHO05D005086 1.9e-101 373.2 247 69.2
PSO170G2975 Papaver somniferum HOM05D004606 ORTHO05D005086 1.9e-101 373.2 247 69.2
Carub.0006s0979 Capsella rubella HOM05D004606 ORTHO05D005086 2.5e-101 372.9 379 52.8
BcaC04g19239 Brassica carinata HOM05D004606 ORTHO05D005086 3.3e-101 372.5 389 52.2
Ciclev10010533m.g Citrus clementina HOM05D004606 ORTHO05D005086 3.3e-101 372.5 247 68.0
Ciclev10008450m.g Citrus clementina HOM05D004606 ORTHO05D005086 4.3e-101 372.1 386 51.0
Eucgr.C02820 Eucalyptus grandis HOM05D004606 ORTHO05D005086 4.3e-101 372.1 394 49.2
BolC9t59377H Brassica oleracea HOM05D004606 ORTHO05D005086 5.6e-101 371.7 386 52.1
BraA10t44697Z Brassica rapa HOM05D004606 ORTHO05D005086 7.4e-101 371.3 377 52.3
BcaB08g37070 Brassica carinata HOM05D004606 ORTHO05D005086 9.6e-101 370.9 381 51.2
Migut.A00296 Erythranthe guttata HOM05D004606 ORTHO05D005086 9.6e-101 370.9 403 48.4
AL6G21980 Arabidopsis lyrata HOM05D004606 ORTHO05D005086 1.3e-100 370.5 379 51.2
C09p65540 Brassica napus HOM05D004606 ORTHO05D005086 2.8e-100 369.4 389 51.9
Aqoxy7G01977_Aqoxy7G01978 Aquilegia oxysepala HOM05D004606 ORTHO05D005086 6.2e-100 368.2 396 49.2
Eucgr.C02822 Eucalyptus grandis HOM05D004606 ORTHO05D005086 1.1e-99 367.5 394 49.2
Eucgr.C02825 Eucalyptus grandis HOM05D004606 ORTHO05D005086 1.4e-99 367.1 394 48.7
AT5G11330 Arabidopsis thaliana HOM05D004606 ORTHO05D005086 2.4e-99 366.3 231 73.6
Ciclev10008369m.g Citrus clementina HOM05D004606 ORTHO05D005086 2.4e-99 366.3 403 49.1
Ciclev10008384m.g Citrus clementina HOM05D004606 ORTHO05D005086 4.0e-99 365.5 398 49.0
Sp6g32250 Schrenkiella parvula HOM05D004606 ORTHO05D005086 4.0e-99 365.5 386 51.6
Ciclev10008396m.g Citrus clementina HOM05D004606 ORTHO05D005086 5.3e-99 365.2 398 49.0
Ciclev10008398m.g Citrus clementina HOM05D004606 ORTHO05D005086 6.9e-99 364.8 395 49.4
Eucgr.C02823 Eucalyptus grandis HOM05D004606 ORTHO05D005086 9.0e-99 364.4 247 68.8
CARHR201940 Cardamine hirsuta HOM05D004606 ORTHO05D005086 1.2e-98 364.0 237 71.7
Ciclev10010634m.g Citrus clementina HOM05D004606 ORTHO05D005086 5.8e-98 361.7 249 67.5
THA.LOC104815034 Tarenaya hassleriana HOM05D004606 ORTHO05D005086 5.8e-98 361.7 237 73.8
Potri.006G248800 Populus trichocarpa HOM05D004606 ORTHO05D005086 1.0e-97 360.9 262 67.6
Eucgr.C02826 Eucalyptus grandis HOM05D004606 ORTHO05D005086 4.9e-97 358.6 247 70.4
FAN27G1511 Fragaria x ananassa HOM05D004606 ORTHO05D005086 8.4e-97 357.8 396 47.7
Eucgr.L02556 Eucalyptus grandis HOM05D004606 ORTHO05D005086 1.4e-96 357.1 247 66.0
Aa31LG3G15860 Aethionema arabicum HOM05D004606 ORTHO05D005086 4.2e-96 355.5 378 50.3
Gohir.D03G064400 Gossypium hirsutum HOM05D004606 ORTHO05D005086 5.1e-94 348.6 396 48.7
ClCG08G013020 Citrullus lanatus HOM05D004606 ORTHO05D005086 1.1e-93 347.4 397 44.8
Migut.A00297 Erythranthe guttata HOM05D004606 ORTHO05D005086 1.9e-93 346.7 396 47.0
Migut.A00293 Erythranthe guttata HOM05D004606 ORTHO05D005086 3.3e-93 345.9 395 46.3
Sc09g0008700 Simmondsia chinensis HOM05D004606 ORTHO05D005086 9.6e-93 344.4 234 70.1
SGA_v2.0_scaffold448G51772 Striga asiatica HOM05D004606 ORTHO05D005086 1.6e-92 343.6 398 46.7
ATR0051G060 Amborella trichopoda HOM05D004606 ORTHO05D005086 3.7e-92 342.4 246 63.8
Duzib168G1788 Durio zibethinus HOM05D004606 ORTHO05D005086 3.7e-92 342.4 221 71.5
CsaV3_2G031760 Cucumis sativus L. HOM05D004606 ORTHO05D005086 1.1e-91 340.9 394 45.2
Oeu045189.1 Olea europaea HOM05D004606 ORTHO05D005086 1.1e-91 340.9 417 45.8
Migut.A00294 Erythranthe guttata HOM05D004606 ORTHO05D005086 2.4e-91 339.7 396 46.7
Migut.A00298 Erythranthe guttata HOM05D004606 ORTHO05D005086 2.4e-91 339.7 396 46.7
CSS0047394 Camellia sinensis var. sinensis HOM05D004606 ORTHO05D005086 4.1e-91 339.0 205 74.6
PGR044G1635 Punica granatum HOM05D004606 ORTHO05D005086 1.5e-90 337.0 394 46.4
Cpa.g.sc91.30 Carica papaya HOM05D004606 ORTHO05D005086 4.5e-90 335.5 216 70.4
Ciclev10010709m.g Citrus clementina HOM05D004606 ORTHO05D005086 5.0e-89 332.0 242 65.7
ClCG08G013030 Citrullus lanatus HOM05D004606 ORTHO05D005086 1.4e-88 330.5 393 44.3
Dinv11601 Davidia involucrata HOM05D004606 ORTHO05D005086 2.1e-87 326.6 247 64.8
MELO3C011227.2 Cucumis melo HOM05D004606 ORTHO05D005086 6.1e-87 325.1 245 60.8
Phvul.001G053700 Phaseolus vulgaris HOM05D004606 ORTHO05D005086 1.8e-83 313.5 319 54.5
Ciclev10010537m.g Citrus clementina HOM05D004606 ORTHO05D005086 2.4e-83 313.2 246 62.2
SEGI_00162 Sequoiadendron giganteum HOM05D004606 ORTHO05D005086 2.4e-83 313.2 240 60.0
SEGI_39416 Sequoiadendron giganteum HOM05D004606 ORTHO05D005086 6.5e-81 305.1 240 58.3
Zm00001eb385840 Zea mays HOM05D004606 ORTHO05D005086 1.9e-80 303.5 249 57.0
Eucgr.L01635 Eucalyptus grandis HOM05D004606 ORTHO05D005086 7.2e-80 301.6 394 42.9
Os06g0597600 Oryza sativa ssp. japonica HOM05D004606 ORTHO05D005086 7.2e-80 301.6 259 56.8
Pp3c18_1340 Physcomitrium patens HOM05D004606 ORTHO05D005086 8.2e-76 288.1 233 55.8
Haze_21597 Corylus avellana HOM05D004606 ORTHO05D005086 1.0e-73 281.2 391 44.0
Mapoly0132s0019 Marchantia polymorpha HOM05D004606 ORTHO05D005086 1.3e-73 280.8 246 52.8
CAN.G211.3 Capsicum annuum HOM05D004606 ORTHO05D005086 3.8e-73 279.3 229 56.8
AagrBONN_evm.TU.Sc2ySwM_368.1911 Anthoceros agrestis HOM05D004606 ORTHO05D005086 4.2e-72 275.8 345 44.3
COL.COLO4_24006 Corchorus olitorius HOM05D004606 ORTHO05D005086 7.2e-64 248.4 338 45.9
Eucgr.C02829 Eucalyptus grandis HOM05D004606 ORTHO05D005086 1.0e-62 244.6 247 53.8
Atru.chr7.2235 Acer truncatum HOM05D004606 ORTHO05D005086 6.3e-60 235.3 263 49.0
MD15G1335000 Malus domestica HOM05D004606 ORTHO05D005086 3.5e-58 229.6 152 69.1
PGR044G2107 Punica granatum HOM05D004606 ORTHO05D005086 5.9e-58 228.8 162 68.5
Atru.chr7.2355 Acer truncatum HOM05D004606 ORTHO05D005086 9.4e-48 194.9 188 51.6
MSTRG.25861 Avicennia marina HOM05D004606 ORTHO05D005086 7.7e-42 175.3 124 66.9
Glyma.14G127200 Glycine max HOM05D004606 ORTHO05D005086 2.5e-40 170.2 113 71.7
PGR044G1641 Punica granatum HOM05D004606 ORTHO05D005086 2.4e-35 153.7 250 36.8
QL04p042408 Quercus lobata HOM05D004606 ORTHO05D005086 1.9e-27 127.5 85 68.2
TPR.G9107 Trifolium pratense HOM05D004606 ORTHO05D005086 1.0e-25 121.7 60 96.7
Ciclev10010790m.g Citrus clementina HOM05D004606 ORTHO05D005086 3.6e-23 113.2 162 45.1
Ciclev10010356m.g Citrus clementina HOM05D004606 ORTHO05D005086 4.4e-21 106.3 78 64.1
Atru.chr7.2354 Acer truncatum HOM05D004606 ORTHO05D005086 7.5e-21 105.5 71 73.2
QL04p042372 Quercus lobata HOM05D004606 ORTHO05D005086 1.4e-19 101.3 67 71.6
QL04p042488 Quercus lobata HOM05D004606 ORTHO05D005086 3.5e-18 96.7 67 68.7
SalBow6G2354 Salvia bowleyana HOM05D004606 ORTHO05D005086 6.4e-12 75.9 194 29.9
SalBow6G5372 Salvia bowleyana HOM05D004606 ORTHO05D005086 1.1e-11 75.1 194 29.9
Cc11_g01610 Coffea canephora HOM05D004606 ORTHO05D005086 5.6e-08 62.8 40 72.5
Ca_24603_v3 Cicer arietinum L. HOM05D000686 ORTHO05D000512 9.6e-08 62.0 247 23.5
Medtr5g013260 Medicago truncatula HOM05D000686 ORTHO05D000512 1.2e-07 61.6 196 26.0
MD02G1318300 Malus domestica HOM05D002878 ORTHO05D003649 2.1e-07 60.8 191 28.8
GSVIVG01007345001 Vitis vinifera HOM05D000686 ORTHO05D000512 2.4e-06 57.4 249 24.5
SalBow4G2310 Salvia bowleyana HOM05D004606 ORTHO05D005086 3.1e-06 57.0 40 67.5
Medtr5g013250 Medicago truncatula HOM05D000686 ORTHO05D000512 4.0e-06 56.6 206 23.8
Cre02.g095650 Chlamydomonas reinhardtii HOM05D014494 ORTHO05D005086 5.2e-06 56.2 253 26.5
Thecc.03G243700 Theobroma cacao HOM05D000686 ORTHO05D000512 5.2e-06 56.2 233 24.9
QL07p005912 Quercus lobata HOM05D002878 ORTHO05D003649 8.9e-06 55.5 177 27.1
Hund14500 Selenicereus undatus HOM05D000686 ORTHO05D000512 8.9e-06 55.5 240 22.9


User provided reference genes

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