Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G15634 Trifolium pratense HOM05D003968 ORTHO05D004077 1.3e-50 203.8 197 100.0
Medtr7g005500 Medicago truncatula HOM05D003968 ORTHO05D004077 1.4e-38 163.7 204 73.0
VMungo1383G2332 Vigna mungo HOM05D003968 ORTHO05D004077 2.5e-38 162.9 205 47.3
Phvul.008G000400 Phaseolus vulgaris HOM05D003968 ORTHO05D004077 1.2e-37 160.6 207 46.4
Thecc.02G196200 Theobroma cacao HOM05D003968 ORTHO05D004077 1.2e-37 160.6 194 78.9
arahy.Tifrunner.gnm1.ann1.25I2B1 Arachis hypogaea HOM05D003968 ORTHO05D004077 1.6e-37 160.2 209 59.8
arahy.Tifrunner.gnm1.ann1.GKU1A2 Arachis hypogaea HOM05D003968 ORTHO05D004077 1.6e-37 160.2 209 59.8
Glyma.18G302000 Glycine max HOM05D003968 ORTHO05D004077 2.7e-37 159.5 205 64.4
Duzib052G1223 Durio zibethinus HOM05D003968 ORTHO05D004077 3.5e-37 159.1 196 69.9
Psat0s2399g0040 Pisum sativum HOM05D003968 ORTHO05D004077 2.3e-36 156.4 213 64.8
Duzib251G0690 Durio zibethinus HOM05D003968 ORTHO05D004077 3.9e-36 155.6 198 65.2
Lj1g0012774 Lotus japonicus HOM05D003968 ORTHO05D004077 3.9e-36 155.6 201 56.7
COL.COLO4_11740 Corchorus olitorius HOM05D003968 ORTHO05D004077 8.7e-36 154.5 206 69.4
Duzib248G0844 Durio zibethinus HOM05D003968 ORTHO05D004077 1.5e-35 153.7 196 56.1
Ciclev10032280m.g Citrus clementina HOM05D003968 ORTHO05D004077 1.9e-35 153.3 195 67.7
Cfa009411 Carpinus fangiana HOM05D003968 ORTHO05D004077 4.3e-35 152.1 195 50.8
Haze_12469 Corylus avellana HOM05D003968 ORTHO05D004077 4.3e-35 152.1 195 49.2
Manes.08G103100 Manihot esculenta HOM05D003968 ORTHO05D004077 4.3e-35 152.1 199 55.8
CiPaw.05G103900 Carya illinoinensis HOM05D003968 ORTHO05D004077 7.4e-35 151.4 195 55.4
QL03p050330 Quercus lobata HOM05D003968 ORTHO05D004077 7.4e-35 151.4 195 45.6
Atru.chr11.2403 Acer truncatum HOM05D003968 ORTHO05D004077 9.7e-35 151.0 201 79.1
MD16G1126900 Malus domestica HOM05D003968 ORTHO05D004077 9.7e-35 151.0 211 64.9
Potri.003G165800 Populus trichocarpa HOM05D003968 ORTHO05D004077 9.7e-35 151.0 195 59.5
CiPaw.06G107600 Carya illinoinensis HOM05D003968 ORTHO05D004077 1.3e-34 150.6 195 53.8
TWI36G1280 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 1.3e-34 150.6 199 56.8
Lalb_Chr04g0257091 Lupinus albus HOM05D003968 ORTHO05D004077 1.6e-34 150.2 197 67.5
Lalb_Chr14g0375131 Lupinus albus HOM05D003968 ORTHO05D004077 1.6e-34 150.2 196 70.9
Manes.09G185900 Manihot esculenta HOM05D003968 ORTHO05D004077 1.6e-34 150.2 214 49.5
Potri.001G062000 Populus trichocarpa HOM05D003968 ORTHO05D004077 1.6e-34 150.2 195 61.5
Hma1.2p1_0459F.1_g157230 Hydrangea macrophylla HOM05D003968 ORTHO05D004077 2.2e-34 149.8 195 74.4
RcHm_v2.0_Chr4g0429341 Rosa chinensis HOM05D003968 ORTHO05D004077 2.2e-34 149.8 211 61.1
FAN12G2512 Fragaria x ananassa HOM05D003968 ORTHO05D004077 2.8e-34 149.4 210 61.4
Gohir.D12G145000 Gossypium hirsutum HOM05D003968 ORTHO05D004077 4.8e-34 148.7 197 65.0
FvH4_4g23070 Fragaria vesca HOM05D003968 ORTHO05D004077 8.2e-34 147.9 213 65.3
Gorai.008G156400 Gossypium raimondii HOM05D003968 ORTHO05D004077 8.2e-34 147.9 199 65.3
Nitab4.5_0007554g0020 Nicotiana tabacum HOM05D003968 ORTHO05D004077 1.1e-33 147.5 195 47.7
Eucgr.H03380 Eucalyptus grandis HOM05D003968 ORTHO05D004077 1.4e-33 147.1 198 58.6
Gohir.A12G140400 Gossypium hirsutum HOM05D003968 ORTHO05D004077 1.4e-33 147.1 200 64.5
TAR629G0662 Trochodendron aralioides HOM05D003968 ORTHO05D004077 1.8e-33 146.7 195 49.2
Dinv17895 Davidia involucrata HOM05D003968 ORTHO05D004077 2.4e-33 146.4 195 64.1
PGR057G0001 Punica granatum HOM05D003968 ORTHO05D004077 2.4e-33 146.4 195 62.6
PGR119G2322 Punica granatum HOM05D003968 ORTHO05D004077 2.4e-33 146.4 195 62.6
GSVIVG01000957001 Vitis vinifera HOM05D003968 ORTHO05D004077 2.4e-33 146.4 195 55.4
MD13G1126400 Malus domestica HOM05D003968 ORTHO05D004077 3.1e-33 146.0 203 62.1
Sc11g0000210 Simmondsia chinensis HOM05D003968 ORTHO05D004077 4.1e-33 145.6 214 49.1
Sabra01G0044600 Salix brachista HOM05D003968 ORTHO05D004077 5.3e-33 145.2 195 60.0
Sabra03G0121000 Salix brachista HOM05D003968 ORTHO05D004077 6.9e-33 144.8 195 56.9
TWI75G0242 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 6.9e-33 144.8 198 56.6
Cpa.g.sc123.52 Carica papaya HOM05D003968 ORTHO05D004077 9.0e-33 144.4 212 62.7
Prupe.1G219000 Prunus persica HOM05D003968 ORTHO05D004077 2.0e-32 143.3 216 57.9
CANSAT56G0023 Cannabis sativa HOM05D003968 ORTHO05D004077 2.6e-32 142.9 216 69.9
ClCG07G011730 Citrullus lanatus HOM05D003968 ORTHO05D004077 2.6e-32 142.9 199 66.8
CSS0002178 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 3.4e-32 142.5 195 54.4
Peaxi162Scf00758g00054 Petunia axillaris HOM05D003968 ORTHO05D004077 5.9e-32 141.7 195 65.6
TWI18G0914 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 1.7e-31 140.2 198 54.5
vmacro22632 Vaccinium macrocarpon HOM05D003968 ORTHO05D004077 2.2e-31 139.8 196 64.3
Sed0024018 Sechium edule HOM05D003968 ORTHO05D004077 2.9e-31 139.4 196 64.3
Actinidia30604 Actinidia chinensis HOM05D003968 ORTHO05D004077 3.8e-31 139.0 195 49.2
Peaxi162Scf00128g01760 Petunia axillaris HOM05D003968 ORTHO05D004077 6.5e-31 138.3 195 42.1
THA.LOC104820530 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 6.5e-31 138.3 193 46.6
MSTRG.8041 Avicennia marina HOM05D003968 ORTHO05D004077 1.4e-30 137.1 199 50.3
Aqoxy5G03211 Aquilegia oxysepala HOM05D003968 ORTHO05D004077 1.9e-30 136.7 193 60.6
CsaV3_4G002470 Cucumis sativus L. HOM05D003968 ORTHO05D004077 1.9e-30 136.7 140 82.9
CARHR127520 Cardamine hirsuta HOM05D003968 ORTHO05D004077 2.5e-30 136.3 193 58.0
Nn4g22193 Nelumbo nucifera HOM05D003968 ORTHO05D004077 2.5e-30 136.3 194 49.5
Nn3g16325 Nelumbo nucifera HOM05D003968 ORTHO05D004077 3.2e-30 136.0 196 50.0
Oeu003280.1 Olea europaea HOM05D003968 ORTHO05D004077 3.2e-30 136.0 195 41.5
Carub.0004s1514 Capsella rubella HOM05D003968 ORTHO05D004077 7.2e-30 134.8 193 65.8
Lj6C835T0 Lonicera japonica HOM05D003968 ORTHO05D004077 7.2e-30 134.8 195 49.7
Migut.K01036 Erythranthe guttata HOM05D003968 ORTHO05D004077 9.4e-30 134.4 203 59.1
AL4G29180 Arabidopsis lyrata HOM05D003968 ORTHO05D004077 1.2e-29 134.0 193 57.5
THA.LOC104814203 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 1.2e-29 134.0 196 51.0
MELO3C017796.2 Cucumis melo HOM05D003968 ORTHO05D004077 2.1e-29 133.3 157 80.9
MBI07_g37482_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 2.7e-29 132.9 194 57.2
CSS0048086 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 3.6e-29 132.5 198 68.2
AT2G33510 Arabidopsis thaliana HOM05D003968 ORTHO05D004077 4.6e-29 132.1 193 59.6
ECA233G5077 Erigeron canadensis HOM05D003968 ORTHO05D004077 4.6e-29 132.1 196 65.8
Thhalv10017284m.g Eutrema salsugineum HOM05D003968 ORTHO05D004077 4.6e-29 132.1 193 58.5
FAN17G1317 Fragaria x ananassa HOM05D003968 ORTHO05D004077 4.6e-29 132.1 240 53.8
HanXRQChr08g0210131 Helianthus annuus HOM05D003968 ORTHO05D004077 4.6e-29 132.1 204 58.8
MSTRG.468 Avicennia marina HOM05D003968 ORTHO05D004077 6.1e-29 131.7 205 54.1
SalBow2G1659 Salvia bowleyana HOM05D003968 ORTHO05D004077 6.1e-29 131.7 204 53.9
CAN.G1277.6 Capsicum annuum HOM05D003968 ORTHO05D004077 1.0e-28 131.0 195 52.8
FAN07G1723 Fragaria x ananassa HOM05D003968 ORTHO05D004077 2.3e-28 129.8 231 61.5
A05p12030 Brassica napus HOM05D003968 ORTHO05D004077 3.0e-28 129.4 193 59.1
BcaB02g10569 Brassica carinata HOM05D003968 ORTHO05D004077 5.1e-28 128.6 195 59.5
Nitab4.5_0001600g0080 Nicotiana tabacum HOM05D003968 ORTHO05D004077 5.1e-28 128.6 186 46.2
HanXRQChr12g0362341 Helianthus annuus HOM05D003968 ORTHO05D004077 6.7e-28 128.3 192 59.4
Ah.03g135740 Amaranthus hybridus HOM05D003968 ORTHO05D004077 8.8e-28 127.9 222 59.5
Actinidia22131 Actinidia chinensis HOM05D003968 ORTHO05D004077 1.5e-27 127.1 195 62.6
BcaB01g03931 Brassica carinata HOM05D003968 ORTHO05D004077 5.7e-27 125.2 192 55.7
Lsat_1_v5_gn_4_1260 Lactuca sativa HOM05D003968 ORTHO05D004077 7.4e-27 124.8 194 65.5
A03p18770 Brassica napus HOM05D003968 ORTHO05D004077 9.7e-27 124.4 192 54.7
BraA03t11137Z Brassica rapa HOM05D003968 ORTHO05D004077 9.7e-27 124.4 192 54.7
BcaC01g05837 Brassica carinata HOM05D003968 ORTHO05D004077 1.3e-26 124.0 192 54.2
C03p21930 Brassica napus HOM05D003968 ORTHO05D004077 1.3e-26 124.0 192 54.2
Lsat_1_v5_gn_8_147160 Lactuca sativa HOM05D003968 ORTHO05D004077 1.3e-26 124.0 234 53.8
CDE06G0253 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 1.7e-26 123.6 196 38.8
Hund25497 Selenicereus undatus HOM05D003968 ORTHO05D004077 1.7e-26 123.6 211 62.1
unitig_747.g21116 Utricularia gibba HOM05D003968 ORTHO05D004077 2.2e-26 123.2 202 37.6
BcaC02g07799 Brassica carinata HOM05D003968 ORTHO05D004077 2.8e-26 122.9 143 64.3
C04p63030 Brassica napus HOM05D003968 ORTHO05D004077 2.8e-26 122.9 143 66.4
CDE02G3264 Ceratophyllum demersum HOM05D003278 ORTHO05D003738 3.7e-26 122.5 193 37.8
BcaC02g11436 Brassica carinata HOM05D003968 ORTHO05D004077 4.8e-26 122.1 200 60.5
A04p25820 Brassica napus HOM05D003968 ORTHO05D004077 4.8e-26 122.1 143 67.1
C04p15610 Brassica napus HOM05D003968 ORTHO05D004077 4.8e-26 122.1 200 60.5
Sp4g15850 Schrenkiella parvula HOM05D003968 ORTHO05D004077 4.8e-26 122.1 140 65.7
THA.LOC104812600 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 1.1e-25 120.9 196 54.6
Ah.02g131150 Amaranthus hybridus HOM05D003968 ORTHO05D004077 2.4e-25 119.8 136 50.0
MBI11_g37080_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 2.4e-25 119.8 140 57.1
Cc11_g17440 Coffea canephora HOM05D003968 ORTHO05D004077 5.3e-25 118.6 223 52.5
Aa31LG9G13440 Aethionema arabicum HOM05D003968 ORTHO05D004077 6.9e-25 118.2 184 51.6
BraA05t20145Z Brassica rapa HOM05D003968 ORTHO05D004077 1.5e-24 117.1 206 52.4
DCAR_024638 Daucus carota HOM05D003968 ORTHO05D004077 2.6e-24 116.3 231 41.1
unitig_26.g10423 Utricularia gibba HOM05D003968 ORTHO05D004077 2.6e-24 116.3 148 43.9
CSS0023603 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 4.5e-24 115.5 195 40.5
Solyc01g009770.3 Solanum lycopersicum HOM05D003968 ORTHO05D004077 5.9e-24 115.2 145 45.5
Sed0012192 Sechium edule HOM05D003968 ORTHO05D004077 7.7e-24 114.8 196 60.2
BraA04t18084Z Brassica rapa HOM05D003968 ORTHO05D004077 1.0e-23 114.4 157 60.5
MELO3C022347.2 Cucumis melo HOM05D003968 ORTHO05D004077 1.0e-23 114.4 201 50.2
CsaV3_6G007850 Cucumis sativus L. HOM05D003968 ORTHO05D004077 1.0e-23 114.4 201 52.7
Sp1g24250 Schrenkiella parvula HOM05D003968 ORTHO05D004077 1.0e-23 114.4 193 52.3
BcaB06g28694 Brassica carinata HOM05D003968 ORTHO05D004077 1.3e-23 114.0 149 55.7
PSO478G1150 Papaver somniferum HOM05D003968 ORTHO05D004077 1.3e-23 114.0 204 55.9
BolC4t27780H Brassica oleracea HOM05D003968 ORTHO05D004077 1.7e-23 113.6 156 60.9
BraA08t34544Z Brassica rapa HOM05D003968 ORTHO05D004077 2.2e-23 113.2 193 45.6
PSO017G3780 Papaver somniferum HOM05D003968 ORTHO05D004077 2.9e-23 112.8 204 55.9
PGSC0003DMG400030000 Solanum tuberosum HOM05D003968 ORTHO05D004077 5.0e-23 112.1 154 43.5
ClCG06G001810 Citrullus lanatus HOM05D003968 ORTHO05D004077 8.5e-23 111.3 142 60.6
Aa31sc415G10 Aethionema arabicum HOM05D003968 ORTHO05D004077 1.1e-22 110.9 193 51.3
Carub.0001s2650 Capsella rubella HOM05D003968 ORTHO05D004077 1.4e-22 110.5 191 53.4
Sopen01g005310 Solanum pennellii HOM05D003968 ORTHO05D004077 1.4e-22 110.5 151 43.0
A07p11490 Brassica napus HOM05D003968 ORTHO05D004077 2.5e-22 109.8 191 35.1
BraA07t28938Z Brassica rapa HOM05D003968 ORTHO05D004077 2.5e-22 109.8 191 35.1
Thhalv10008849m.g Eutrema salsugineum HOM05D003968 ORTHO05D004077 2.5e-22 109.8 143 65.0
AT1G28070 Arabidopsis thaliana HOM05D003968 ORTHO05D004077 4.2e-22 109.0 193 51.3
BolC4t23129H Brassica oleracea HOM05D003968 ORTHO05D004077 9.4e-22 107.8 213 55.9
BcaB03g13960 Brassica carinata HOM05D003968 ORTHO05D004077 1.2e-21 107.5 191 34.6
A08p25930 Brassica napus HOM05D003968 ORTHO05D004077 2.7e-21 106.3 193 44.0
ATR0582G076 Amborella trichopoda HOM05D003968 ORTHO05D004077 3.6e-21 105.9 192 38.0
CARHR027520 Cardamine hirsuta HOM05D003968 ORTHO05D004077 3.6e-21 105.9 195 47.7
unitig_749.g13321 Utricularia gibba HOM05D003968 ORTHO05D004077 3.6e-21 105.9 200 35.5
BolC3t19720H Brassica oleracea HOM05D003968 ORTHO05D004077 2.3e-20 103.2 193 45.1
PSO675G4434 Papaver somniferum HOM05D003968 ORTHO05D004077 3.3e-19 99.4 138 49.3
BcaC01g00004 Brassica carinata HOM05D003968 ORTHO05D004077 9.7e-19 97.8 193 43.5
C03p74720 Brassica napus HOM05D003968 ORTHO05D004077 1.3e-18 97.4 193 44.0
PSO229G0040 Papaver somniferum HOM05D003968 ORTHO05D004077 8.2e-18 94.7 138 44.2
BcaC06g35328 Brassica carinata HOM05D003968 ORTHO05D004077 1.4e-17 94.0 191 32.5
C07p17340 Brassica napus HOM05D003968 ORTHO05D004077 1.4e-17 94.0 191 32.5
BolC7t42238H Brassica oleracea HOM05D003968 ORTHO05D004077 1.4e-17 94.0 191 32.5
SGA_v2.0_scaffold80G25944 Striga asiatica HOM05D003968 ORTHO05D004077 1.4e-17 94.0 99 71.7
Rhsim12G0020700 Rhododendron simsii HOM05D003968 ORTHO05D004077 1.8e-17 93.6 114 54.4
TAR622G0782 Trochodendron aralioides HOM05D003968 ORTHO05D004077 1.8e-17 93.6 195 33.3
BcaC05g26810 Brassica carinata HOM05D003968 ORTHO05D004077 4.1e-17 92.4 140 39.3
A09p38020 Brassica napus HOM05D003968 ORTHO05D004077 1.7e-15 87.0 143 53.8
BraA09t39312Z Brassica rapa HOM05D003968 ORTHO05D004077 1.7e-15 87.0 143 53.8
Oeu019428.1 Olea europaea HOM05D003968 ORTHO05D004077 2.2e-15 86.7 192 30.2
BcaC05g26624 Brassica carinata HOM05D003968 ORTHO05D004077 5.0e-15 85.5 143 55.9
C05p26740 Brassica napus HOM05D003968 ORTHO05D004077 5.0e-15 85.5 143 55.9
HPP92_023087 Vanilla planifolia HOM05D003968 ORTHO05D004077 3.2e-14 82.8 153 43.1
CSS0031909 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 6.1e-13 78.6 221 32.1
HPP92_011550 Vanilla planifolia HOM05D003968 ORTHO05D004077 6.1e-13 78.6 157 42.7
BolC5t31398H Brassica oleracea HOM05D003968 ORTHO05D004077 2.6e-11 73.2 143 51.7
Gohir.D01G019600 Gossypium hirsutum HOM05D003968 ORTHO05D004077 3.3e-11 72.8 188 47.3
Gorai.002G022000 Gossypium raimondii HOM05D003968 ORTHO05D004077 3.3e-11 72.8 188 47.3
Gohir.A01G021200 Gossypium hirsutum HOM05D003968 ORTHO05D004077 4.4e-11 72.4 188 47.3
MBI01_g34379_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 1.7e-10 70.5 121 43.8
Os02g0516400 Oryza sativa ssp. japonica HOM05D003968 ORTHO05D004077 2.2e-10 70.1 43 58.1
Lalb_Chr22g0349911 Lupinus albus HOM05D003968 ORTHO05D004077 3.1e-09 66.2 76 76.3
Ca_06512_v3 Cicer arietinum L. HOM05D003968 ORTHO05D004077 5.9e-08 62.0 95 72.6
BcaC05g26622 Brassica carinata HOM05D003968 ORTHO05D004077 7.7e-08 61.6 38 65.8
AL1G41580 Arabidopsis lyrata HOM05D003968 ORTHO05D004077 1.3e-07 60.8 35 74.3
SEGI_36735 Sequoiadendron giganteum HOM05D012184 ORTHO05D004077 6.5e-07 58.5 132 30.3
Pp3c27_4970 Physcomitrium patens HOM05D013579 ORTHO05D004077 7.2e-06 55.1 44 50.0


User provided reference genes

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